Wall clock time and date at job start Tue Mar 31 2020 13:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47389 * 2 1 4 4 C 1.37467 * 123.35376 * 265.21390 * 3 2 1 5 5 C 1.33814 * 115.10355 * 180.29339 * 4 3 2 6 6 S 1.70624 * 110.95206 * 359.73270 * 5 4 3 7 7 C 1.36650 * 123.34733 * 84.99935 * 3 2 1 8 8 C 1.46579 * 125.46140 * 359.97438 * 7 3 2 9 9 O 1.21706 * 120.00063 * 359.72389 * 8 7 3 10 10 N 1.34768 * 120.00094 * 179.71678 * 8 7 3 11 11 C 1.46508 * 120.00253 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.45612 * 35.00745 * 11 10 8 13 13 C 1.53040 * 109.46158 * 275.03329 * 11 10 8 14 14 C 1.53200 * 109.30976 * 301.36960 * 13 11 10 15 15 N 1.46930 * 108.76401 * 305.34326 * 14 13 11 16 16 C 1.36930 * 120.62929 * 233.64042 * 15 14 13 17 17 H 1.08000 * 120.00008 * 150.14691 * 16 15 14 18 18 C 1.38817 * 120.00128 * 330.14061 * 16 15 14 19 19 N 1.31618 * 119.99812 * 344.50717 * 18 16 15 20 20 Si 1.86804 * 119.99789 * 164.50164 * 18 16 15 21 21 H 1.48502 * 109.46681 * 90.00400 * 20 18 16 22 22 H 1.48497 * 109.46584 * 210.00185 * 20 18 16 23 23 H 1.48494 * 109.47079 * 330.00518 * 20 18 16 24 24 C 1.46931 * 118.73757 * 53.62015 * 15 14 13 25 25 H 1.09001 * 109.58850 * 66.17824 * 24 15 14 26 26 C 1.52996 * 109.58392 * 186.60313 * 24 15 14 27 27 C 1.53042 * 109.46157 * 154.97242 * 11 10 8 28 28 H 1.09006 * 109.47256 * 59.99644 * 1 2 3 29 29 H 1.09003 * 109.47783 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47078 * 300.00250 * 1 2 3 31 31 H 1.09003 * 109.47078 * 239.99749 * 2 1 3 32 32 H 1.09001 * 109.46881 * 120.00605 * 2 1 3 33 33 H 1.08004 * 122.45095 * 0.04962 * 4 3 2 34 34 H 1.07996 * 124.52662 * 179.74748 * 5 4 3 35 35 H 0.97003 * 120.00194 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.49711 * 61.30362 * 13 11 10 37 37 H 1.08993 * 109.49462 * 181.40675 * 13 11 10 38 38 H 1.08997 * 109.58482 * 185.56761 * 14 13 11 39 39 H 1.09002 * 109.71518 * 65.20110 * 14 13 11 40 40 H 0.96999 * 119.99615 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.47177 * 179.28809 * 26 24 15 42 42 H 1.08998 * 109.47354 * 299.28596 * 26 24 15 43 43 H 1.08999 * 109.47605 * 59.28779 * 26 24 15 44 44 H 1.09000 * 109.49812 * 178.59172 * 27 11 10 45 45 H 1.08995 * 109.50239 * 298.69620 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3747 2.1014 -1.1442 5 6 2.8069 3.3532 -0.9524 6 16 2.8000 3.7536 0.7062 7 6 2.1890 2.1622 1.1372 8 6 1.8995 1.7025 2.4986 9 8 1.4780 0.5759 2.6838 10 7 2.1003 2.5274 3.5453 11 6 1.8115 2.0678 4.9061 12 1 2.0523 1.0080 4.9902 13 6 0.3268 2.2791 5.2114 14 6 -0.0154 3.7645 5.0581 15 7 0.8925 4.5487 5.9065 16 6 0.3976 5.4423 6.8183 17 1 0.9469 5.6489 7.7250 18 6 -0.8101 6.0829 6.5774 19 7 -1.3281 6.0772 5.3675 20 14 -1.7001 6.9529 7.9705 21 1 -1.2489 8.3660 8.0399 22 1 -3.1640 6.9121 7.7243 23 1 -1.3948 6.2721 9.2544 24 6 2.3414 4.3554 5.7581 25 1 2.6575 4.7018 4.7741 26 6 3.0777 5.1433 6.8434 27 6 2.6572 2.8633 5.9032 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3039 1.6569 -2.1260 34 1 3.1183 4.0210 -1.7419 35 1 2.4360 3.4254 3.3977 36 1 -0.2745 1.6939 4.5158 37 1 0.1165 1.9606 6.2323 38 1 -1.0458 3.9361 5.3695 39 1 0.1066 4.0645 4.0174 40 1 -2.1722 6.5245 5.1992 41 1 4.1517 4.9885 6.7394 42 1 2.8518 6.2044 6.7385 43 1 2.7544 4.7984 7.8255 44 1 2.4245 2.5392 6.9175 45 1 3.7145 2.6938 5.7001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948064520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:07 Heat of formation + Delta-G solvation = 6.591687 kcal Electronic energy + Delta-G solvation = -26003.633781 eV Core-core repulsion = 22533.870807 eV Total energy + Delta-G solvation = -3469.762975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.94280 -38.46416 -37.20772 -34.29071 -32.70224 -32.34626 -31.42892 -29.95763 -28.80215 -26.41075 -25.39690 -24.84243 -22.41844 -22.21895 -21.58617 -20.59864 -18.81476 -18.73975 -17.96341 -16.38026 -15.89559 -15.47205 -15.22459 -14.93366 -14.62360 -14.07305 -14.01994 -13.73667 -13.65679 -13.50269 -13.14582 -13.01895 -12.67296 -12.45476 -12.34015 -11.87511 -11.81484 -11.48080 -11.38669 -11.20572 -11.01046 -10.97157 -10.69186 -10.65951 -10.61982 -10.41482 -10.14567 -10.09178 -9.68014 -9.58660 -9.29699 -8.88954 -8.54233 -8.46113 -8.45348 -6.62719 -5.77908 -3.22267 0.55210 1.50715 1.90246 2.39339 3.36659 3.39981 3.44507 3.46026 3.50915 4.48600 4.77571 4.95163 5.13000 5.19532 5.31959 5.35680 5.38171 5.43233 5.52241 5.62063 5.67066 5.70423 5.80218 5.98329 6.00062 6.06478 6.10799 6.22874 6.29232 6.30570 6.35641 6.42823 6.44485 6.50881 6.57473 6.63951 6.77249 6.94996 7.02004 7.04342 7.37948 7.68315 7.81526 7.82341 8.46341 8.46975 9.21858 9.85389 10.42557 11.30322 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.003752 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.966394 B = 7460.737843 C = 7500.139646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 C -0.026 4.026 4 C -0.147 4.147 5 C -0.235 4.235 6 S 0.205 5.795 7 C -0.263 4.263 8 C 0.589 3.411 9 O -0.533 6.533 10 N -0.709 5.709 11 C 0.156 3.844 12 H 0.075 0.925 13 C -0.153 4.153 14 C 0.176 3.824 15 N -0.586 5.586 16 C -0.252 4.252 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.168 3.832 25 H 0.018 0.982 26 C -0.136 4.136 27 C -0.140 4.140 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.398 0.602 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.018 0.982 40 H 0.253 0.747 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -7.556 -10.822 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.041 4.041 4 C -0.179 4.179 5 C -0.373 4.373 6 S 0.474 5.526 7 C -0.383 4.383 8 C 0.375 3.625 9 O -0.412 6.412 10 N -0.360 5.360 11 C 0.052 3.948 12 H 0.093 0.907 13 C -0.194 4.194 14 C 0.050 3.950 15 N -0.309 5.309 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.061 3.939 25 H 0.035 0.965 26 C -0.194 4.194 27 C -0.179 4.179 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.184 0.816 35 H 0.233 0.767 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.347 -6.903 -9.875 15.249 hybrid contribution -0.787 -0.106 -0.520 0.949 sum 8.560 -7.009 -10.395 15.180 Atomic orbital electron populations 1.21608 0.94321 1.01583 1.01977 1.20376 0.96533 0.90624 1.03257 1.19488 0.96720 0.97512 0.90425 1.19874 1.04209 0.94273 0.99532 1.25246 1.08609 1.01344 1.02121 1.83283 1.59195 1.11775 0.98381 1.24570 1.16416 0.99397 0.97923 1.16879 0.77846 0.85081 0.82731 1.90751 1.46182 1.19235 1.85045 1.46053 1.66434 1.16769 1.06748 1.20916 0.96349 0.97921 0.79605 0.90720 1.22556 0.94413 1.01518 1.00873 1.20695 0.96260 0.84922 0.93107 1.44116 0.98282 1.44606 1.43920 1.19138 1.04507 1.16865 0.97619 0.91343 1.25085 1.00316 0.98222 0.95801 1.70022 1.20040 1.46022 1.18481 0.86359 0.79105 0.79553 0.82113 1.21467 1.21665 1.20504 1.20386 0.86666 0.91135 0.95748 0.96467 1.21797 0.97067 1.01308 0.99223 1.22381 0.97831 0.98608 0.99129 0.93374 0.92526 0.91905 0.91680 0.88776 0.84103 0.81597 0.76651 0.92728 0.91709 0.89758 0.96431 0.93720 0.94318 0.91931 0.92620 0.90506 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.77 37.16 0.36 -1.35 16 2 C -0.07 -0.86 5.50 -27.88 -0.15 -1.01 16 3 C -0.03 -0.35 5.16 -105.48 -0.54 -0.89 16 4 C -0.15 -1.63 9.96 -41.42 -0.41 -2.04 16 5 C -0.24 -2.47 10.92 29.18 0.32 -2.15 16 6 S 0.20 2.53 22.16 -107.50 -2.38 0.15 16 7 C -0.26 -3.89 6.45 -36.79 -0.24 -4.12 16 8 C 0.59 10.02 7.74 -12.90 -0.10 9.92 16 9 O -0.53 -10.02 13.37 5.18 0.07 -9.95 16 10 N -0.71 -11.91 4.26 -55.10 -0.23 -12.14 16 11 C 0.16 2.72 2.78 -67.88 -0.19 2.53 16 12 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 13 C -0.15 -3.04 5.77 -26.61 -0.15 -3.20 16 14 C 0.18 4.13 5.02 -3.70 -0.02 4.11 16 15 N -0.59 -13.82 2.99 -164.76 -0.49 -14.31 16 16 C -0.25 -6.56 8.58 -15.06 -0.13 -6.69 16 17 H 0.07 1.74 6.23 -52.49 -0.33 1.41 16 18 C 0.00 0.12 4.94 -17.43 -0.09 0.04 16 19 N -0.90 -25.67 11.23 55.49 0.62 -25.05 16 20 Si 0.90 21.33 29.58 -169.99 -5.03 16.30 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.17 3.25 3.20 -67.60 -0.22 3.03 16 25 H 0.02 0.35 6.64 -51.93 -0.34 0.00 16 26 C -0.14 -2.43 7.95 37.16 0.30 -2.13 16 27 C -0.14 -2.32 5.07 -26.61 -0.13 -2.46 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.95 7.58 -51.93 -0.39 0.56 16 31 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.09 1.35 6.33 -51.93 -0.33 1.02 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.40 6.51 5.98 -40.82 -0.24 6.26 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 2.26 6.15 -51.93 -0.32 1.94 16 39 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.21 7.67 -51.93 -0.40 0.81 16 43 H 0.05 1.01 7.40 -51.93 -0.38 0.62 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -29.46 362.57 -10.28 -39.74 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.90 Total: 6.23 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.40 Total: -6.42 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.10 Total: -51.51 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.38 Total: 0.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.46 -10.28 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948064520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.329 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds