Wall clock time and date at job start Tue Mar 31 2020 13:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47389 * 2 1 4 4 C 1.37467 * 123.35376 * 265.21390 * 3 2 1 5 5 C 1.33814 * 115.10355 * 180.29339 * 4 3 2 6 6 S 1.70624 * 110.95206 * 359.73270 * 5 4 3 7 7 C 1.36650 * 123.34733 * 84.99935 * 3 2 1 8 8 C 1.46579 * 125.46140 * 359.97438 * 7 3 2 9 9 O 1.21706 * 120.00063 * 359.72389 * 8 7 3 10 10 N 1.34768 * 120.00094 * 179.71678 * 8 7 3 11 11 C 1.46508 * 120.00253 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.45612 * 35.00745 * 11 10 8 13 13 C 1.53040 * 109.46158 * 275.03329 * 11 10 8 14 14 C 1.53200 * 109.30976 * 301.36960 * 13 11 10 15 15 N 1.46930 * 108.76401 * 305.34326 * 14 13 11 16 16 C 1.36930 * 120.62929 * 233.64042 * 15 14 13 17 17 H 1.08000 * 120.00008 * 150.14691 * 16 15 14 18 18 C 1.38817 * 120.00128 * 330.14061 * 16 15 14 19 19 N 1.31618 * 119.99812 * 344.50717 * 18 16 15 20 20 Si 1.86804 * 119.99789 * 164.50164 * 18 16 15 21 21 H 1.48502 * 109.46681 * 90.00400 * 20 18 16 22 22 H 1.48497 * 109.46584 * 210.00185 * 20 18 16 23 23 H 1.48494 * 109.47079 * 330.00518 * 20 18 16 24 24 C 1.46931 * 118.73757 * 53.62015 * 15 14 13 25 25 H 1.09001 * 109.58850 * 66.17824 * 24 15 14 26 26 C 1.52996 * 109.58392 * 186.60313 * 24 15 14 27 27 C 1.53042 * 109.46157 * 154.97242 * 11 10 8 28 28 H 1.09006 * 109.47256 * 59.99644 * 1 2 3 29 29 H 1.09003 * 109.47783 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47078 * 300.00250 * 1 2 3 31 31 H 1.09003 * 109.47078 * 239.99749 * 2 1 3 32 32 H 1.09001 * 109.46881 * 120.00605 * 2 1 3 33 33 H 1.08004 * 122.45095 * 0.04962 * 4 3 2 34 34 H 1.07996 * 124.52662 * 179.74748 * 5 4 3 35 35 H 0.97003 * 120.00194 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.49711 * 61.30362 * 13 11 10 37 37 H 1.08993 * 109.49462 * 181.40675 * 13 11 10 38 38 H 1.08997 * 109.58482 * 185.56761 * 14 13 11 39 39 H 1.09002 * 109.71518 * 65.20110 * 14 13 11 40 40 H 0.96999 * 119.99615 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.47177 * 179.28809 * 26 24 15 42 42 H 1.08998 * 109.47354 * 299.28596 * 26 24 15 43 43 H 1.08999 * 109.47605 * 59.28779 * 26 24 15 44 44 H 1.09000 * 109.49812 * 178.59172 * 27 11 10 45 45 H 1.08995 * 109.50239 * 298.69620 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3747 2.1014 -1.1442 5 6 2.8069 3.3532 -0.9524 6 16 2.8000 3.7536 0.7062 7 6 2.1890 2.1622 1.1372 8 6 1.8995 1.7025 2.4986 9 8 1.4780 0.5759 2.6838 10 7 2.1003 2.5274 3.5453 11 6 1.8115 2.0678 4.9061 12 1 2.0523 1.0080 4.9902 13 6 0.3268 2.2791 5.2114 14 6 -0.0154 3.7645 5.0581 15 7 0.8925 4.5487 5.9065 16 6 0.3976 5.4423 6.8183 17 1 0.9469 5.6489 7.7250 18 6 -0.8101 6.0829 6.5774 19 7 -1.3281 6.0772 5.3675 20 14 -1.7001 6.9529 7.9705 21 1 -1.2489 8.3660 8.0399 22 1 -3.1640 6.9121 7.7243 23 1 -1.3948 6.2721 9.2544 24 6 2.3414 4.3554 5.7581 25 1 2.6575 4.7018 4.7741 26 6 3.0777 5.1433 6.8434 27 6 2.6572 2.8633 5.9032 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3039 1.6569 -2.1260 34 1 3.1183 4.0210 -1.7419 35 1 2.4360 3.4254 3.3977 36 1 -0.2745 1.6939 4.5158 37 1 0.1165 1.9606 6.2323 38 1 -1.0458 3.9361 5.3695 39 1 0.1066 4.0645 4.0174 40 1 -2.1722 6.5245 5.1992 41 1 4.1517 4.9885 6.7394 42 1 2.8518 6.2044 6.7385 43 1 2.7544 4.7984 7.8255 44 1 2.4245 2.5392 6.9175 45 1 3.7145 2.6938 5.7001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948064520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:06 Heat of formation + Delta-G solvation = -9.484579 kcal Electronic energy + Delta-G solvation = -26004.330900 eV Core-core repulsion = 22533.870807 eV Total energy + Delta-G solvation = -3470.460094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26109 -39.72512 -38.53095 -35.89120 -34.12365 -33.63665 -32.98801 -31.63319 -29.98512 -27.98897 -26.87056 -26.23735 -23.89644 -23.33652 -22.92630 -22.18740 -20.31546 -19.95324 -19.03883 -18.19132 -17.13598 -16.97505 -16.63672 -16.31330 -15.89971 -15.71445 -15.50063 -15.04966 -14.86791 -14.84453 -14.51694 -14.32739 -14.13919 -13.81995 -13.41440 -13.29909 -13.10298 -12.84161 -12.82338 -12.67885 -12.47826 -12.40239 -12.31557 -12.17615 -12.02022 -11.93462 -11.72286 -11.62940 -11.41716 -10.99510 -10.88289 -10.50200 -10.12908 -9.70510 -9.41721 -8.58475 -7.81781 -5.27608 -0.44479 0.53628 0.98121 1.43985 1.46699 1.49427 1.57459 2.14540 2.25752 2.53752 3.34002 3.61340 3.77676 3.90924 3.97546 4.07638 4.17264 4.20353 4.33854 4.42607 4.48400 4.54155 4.59298 4.65818 4.77661 4.78136 4.87973 4.91680 4.97296 5.03297 5.07884 5.09314 5.11331 5.16163 5.33636 5.40039 5.43028 5.52407 5.53971 5.55881 5.59488 5.74211 5.75999 6.45136 6.49864 7.16689 7.19992 7.92041 8.44421 9.24614 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.003752 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.966394 B = 7460.737843 C = 7500.139646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.068 4.068 3 C -0.023 4.023 4 C -0.154 4.154 5 C -0.214 4.214 6 S 0.197 5.803 7 C -0.304 4.304 8 C 0.585 3.415 9 O -0.559 6.559 10 N -0.709 5.709 11 C 0.161 3.839 12 H 0.082 0.918 13 C -0.141 4.141 14 C 0.190 3.810 15 N -0.599 5.599 16 C -0.248 4.248 17 H 0.076 0.924 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.958 3.042 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.270 1.270 24 C 0.159 3.841 25 H 0.018 0.982 26 C -0.130 4.130 27 C -0.126 4.126 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.173 0.827 34 H 0.201 0.799 35 H 0.399 0.601 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.045 0.955 39 H -0.005 1.005 40 H 0.245 0.755 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.492 -7.911 -11.843 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 C -0.039 4.039 4 C -0.185 4.185 5 C -0.352 4.352 6 S 0.466 5.534 7 C -0.424 4.424 8 C 0.373 3.627 9 O -0.441 6.441 10 N -0.360 5.360 11 C 0.057 3.943 12 H 0.100 0.900 13 C -0.181 4.181 14 C 0.064 3.936 15 N -0.324 5.324 16 C -0.379 4.379 17 H 0.094 0.906 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.787 3.213 21 H -0.212 1.212 22 H -0.227 1.227 23 H -0.195 1.195 24 C 0.054 3.946 25 H 0.036 0.964 26 C -0.187 4.187 27 C -0.166 4.166 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.190 0.810 34 H 0.218 0.782 35 H 0.236 0.764 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.013 0.987 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.485 -7.259 -10.880 17.406 hybrid contribution -1.389 -0.009 -0.300 1.421 sum 10.096 -7.268 -11.180 16.726 Atomic orbital electron populations 1.21560 0.94557 1.02102 1.00825 1.20390 0.96243 0.90510 1.03621 1.19833 0.95478 0.97762 0.90839 1.20137 1.04008 0.94354 1.00001 1.25680 1.06470 1.01506 1.01506 1.83289 1.59213 1.10636 1.00300 1.24464 1.19519 1.01223 0.97178 1.17242 0.77091 0.84709 0.83670 1.90725 1.47385 1.20279 1.85672 1.46015 1.66560 1.16878 1.06552 1.20817 0.94453 0.98610 0.80457 0.89995 1.22369 0.96562 0.98498 1.00672 1.20349 0.94458 0.87172 0.91639 1.44329 1.00279 1.44282 1.43461 1.19490 1.04298 1.15924 0.98142 0.90605 1.25780 1.01488 0.99791 0.97595 1.70182 1.20135 1.47694 1.20299 0.85412 0.77299 0.78595 0.79973 1.21218 1.22662 1.19496 1.20651 0.84147 0.93409 0.96438 0.96450 1.21731 0.99230 0.99530 0.98203 1.22259 0.99467 0.95917 0.98913 0.91961 0.91239 0.95461 0.88581 0.91047 0.80996 0.78220 0.76450 0.93706 0.91593 0.93672 0.98732 0.94562 0.90491 0.93991 0.93005 0.90195 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.77 71.98 0.70 -2.55 16 2 C -0.07 -1.63 5.50 29.85 0.16 -1.47 16 3 C -0.02 -0.58 5.16 -20.42 -0.11 -0.68 16 4 C -0.15 -2.94 9.96 21.08 0.21 -2.73 16 5 C -0.21 -3.83 10.92 66.81 0.73 -3.10 16 6 S 0.20 4.65 22.16 -56.49 -1.25 3.40 16 7 C -0.30 -8.93 6.45 24.08 0.16 -8.78 16 8 C 0.58 20.28 7.74 86.42 0.67 20.95 16 9 O -0.56 -21.64 13.37 -4.37 -0.06 -21.70 16 10 N -0.71 -23.94 4.26 -446.45 -1.90 -25.85 16 11 C 0.16 5.54 2.78 45.02 0.13 5.66 16 12 H 0.08 2.76 7.58 -2.39 -0.02 2.74 16 13 C -0.14 -5.73 5.77 30.67 0.18 -5.55 16 14 C 0.19 9.28 5.02 86.36 0.43 9.72 16 15 N -0.60 -28.61 2.99 -675.19 -2.02 -30.63 16 16 C -0.25 -13.03 8.58 84.04 0.72 -12.31 16 17 H 0.08 3.82 6.23 -2.91 -0.02 3.80 16 18 C -0.05 -2.84 4.94 84.86 0.42 -2.42 16 19 N -0.94 -55.42 11.23 21.65 0.24 -55.17 16 20 Si 0.96 44.67 29.58 68.60 2.03 46.70 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.16 5.99 3.20 44.97 0.14 6.14 16 25 H 0.02 0.68 6.64 -2.39 -0.02 0.67 16 26 C -0.13 -4.35 7.95 71.98 0.57 -3.78 16 27 C -0.13 -3.94 5.07 30.67 0.16 -3.79 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.03 0.84 7.58 -2.39 -0.02 0.83 16 31 H 0.10 1.66 8.12 -2.39 -0.02 1.64 16 32 H 0.07 2.05 6.33 -2.39 -0.02 2.04 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.40 13.10 5.98 -92.71 -0.55 12.55 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.04 2.55 6.15 -2.39 -0.01 2.53 16 39 H -0.01 -0.28 7.74 -2.39 -0.02 -0.30 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.04 1.56 7.67 -2.39 -0.02 1.55 16 43 H 0.05 1.77 7.40 -2.39 -0.02 1.75 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.09 2.25 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -66.47 362.57 2.76 -63.71 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.44 Total: 24.23 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.27 Total: -4.69 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -3.68 Total: -111.65 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.25 Total: 3.40 kcal Total: -66.47 2.76 -63.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948064520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.230 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds