Wall clock time and date at job start Tue Mar 31 2020 13:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47368 * 2 1 4 4 C 1.37468 * 123.35029 * 265.02405 * 3 2 1 5 5 C 1.33817 * 115.10030 * 179.97438 * 4 3 2 6 6 S 1.70615 * 110.95772 * 359.97438 * 5 4 3 7 7 C 1.36646 * 123.34969 * 84.72705 * 3 2 1 8 8 C 1.46588 * 125.46188 * 0.02562 * 7 3 2 9 9 O 1.21694 * 119.99416 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00105 * 179.97438 * 8 7 3 11 11 C 1.46498 * 119.99867 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.45889 * 325.02298 * 11 10 8 13 13 C 1.53041 * 109.46148 * 85.00041 * 11 10 8 14 14 C 1.53190 * 109.30858 * 58.65611 * 13 11 10 15 15 N 1.46924 * 108.77970 * 54.63548 * 14 13 11 16 16 C 1.36940 * 120.62962 * 126.40902 * 15 14 13 17 17 H 1.07996 * 119.99780 * 221.21777 * 16 15 14 18 18 C 1.38814 * 119.99831 * 41.22295 * 16 15 14 19 19 N 1.31620 * 119.99539 * 214.82686 * 18 16 15 20 20 Si 1.86793 * 120.00382 * 34.83013 * 18 16 15 21 21 H 1.48496 * 109.47361 * 84.62421 * 20 18 16 22 22 H 1.48496 * 109.47453 * 204.62532 * 20 18 16 23 23 H 1.48509 * 109.47050 * 324.62578 * 20 18 16 24 24 C 1.46919 * 118.73800 * 306.38956 * 15 14 13 25 25 H 1.09000 * 109.58795 * 293.81840 * 24 15 14 26 26 C 1.52996 * 109.58692 * 173.39595 * 24 15 14 27 27 C 1.53045 * 109.45762 * 205.06983 * 11 10 8 28 28 H 1.09007 * 109.47077 * 300.00595 * 1 2 3 29 29 H 1.08996 * 109.47143 * 59.99832 * 1 2 3 30 30 H 1.08998 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47390 * 239.99939 * 2 1 3 32 32 H 1.09002 * 109.46854 * 119.99806 * 2 1 3 33 33 H 1.07998 * 122.45066 * 359.93889 * 4 3 2 34 34 H 1.08006 * 124.52570 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99606 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.49567 * 178.60635 * 13 11 10 37 37 H 1.08998 * 109.49658 * 298.67284 * 13 11 10 38 38 H 1.09006 * 109.58500 * 174.42511 * 14 13 11 39 39 H 1.09001 * 109.58973 * 294.70197 * 14 13 11 40 40 H 0.96999 * 119.99634 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47650 * 60.00105 * 26 24 15 42 42 H 1.09000 * 109.47382 * 180.02562 * 26 24 15 43 43 H 1.09002 * 109.47078 * 299.99657 * 26 24 15 44 44 H 1.08997 * 109.49591 * 61.29327 * 27 11 10 45 45 H 1.08997 * 109.49436 * 181.39409 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3782 2.1001 -1.1440 5 6 2.8035 3.3544 -0.9527 6 16 2.7913 3.7568 0.7052 7 6 2.1839 2.1640 1.1366 8 6 1.8894 1.7062 2.4977 9 8 1.4732 0.5778 2.6833 10 7 2.0804 2.5346 3.5435 11 6 1.7865 2.0768 4.9037 12 1 0.9251 1.4092 4.8840 13 6 2.9989 1.3288 5.4630 14 6 4.2154 2.2597 5.4572 15 7 3.8746 3.4880 6.1878 16 6 4.6604 3.9267 7.2200 17 1 4.2043 4.3202 8.1163 18 6 6.0431 3.8658 7.1139 19 7 6.7740 3.6094 8.1781 20 14 6.8665 4.1476 5.4611 21 1 7.0483 5.6048 5.2407 22 1 8.1908 3.4759 5.4467 23 1 6.0150 3.5862 4.3817 24 6 2.6749 4.2368 5.7897 25 1 2.8147 4.6460 4.7892 26 6 2.4276 5.3746 6.7823 27 6 1.4755 3.2838 5.7918 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3121 1.6539 -2.1253 34 1 3.1132 4.0229 -1.7425 35 1 2.4125 3.4339 3.3954 36 1 2.7900 1.0094 6.4840 37 1 3.2052 0.4558 4.8437 38 1 5.0559 1.7657 5.9449 39 1 4.4826 2.5056 4.4295 40 1 7.7402 3.5665 8.1039 41 1 3.2873 6.0446 6.7886 42 1 1.5370 5.9286 6.4855 43 1 2.2819 4.9610 7.7802 44 1 0.5979 3.8026 5.4061 45 1 1.2810 2.9460 6.8097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948064521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:11 Heat of formation + Delta-G solvation = 9.213515 kcal Electronic energy + Delta-G solvation = -26067.881759 eV Core-core repulsion = 22598.232475 eV Total energy + Delta-G solvation = -3469.649284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.09355 -38.62045 -37.36587 -34.39540 -32.81610 -32.34380 -31.67514 -30.57502 -29.00462 -26.57474 -25.48970 -24.75789 -22.54242 -22.41146 -21.85622 -20.60858 -18.96999 -18.91935 -18.10982 -16.50837 -16.01728 -15.66015 -15.24384 -14.97409 -14.81795 -14.47517 -14.14996 -13.89559 -13.66171 -13.57290 -13.31498 -13.15274 -12.88123 -12.48774 -12.43498 -12.01074 -11.96146 -11.80205 -11.57920 -11.46736 -11.24723 -11.09374 -10.93851 -10.78300 -10.65590 -10.44267 -10.28987 -9.98497 -9.77068 -9.70296 -9.42962 -9.02027 -8.70219 -8.58749 -8.35740 -6.71438 -6.09675 -3.40059 0.43167 1.38220 1.77841 2.28143 3.26671 3.36064 3.38925 3.49560 3.53661 4.56334 4.66746 4.81748 4.90444 5.02064 5.08020 5.21596 5.25651 5.29881 5.39911 5.47775 5.52541 5.58291 5.68235 5.81578 5.87990 5.94595 5.97817 6.06790 6.15855 6.16558 6.26583 6.29687 6.35549 6.41123 6.42498 6.46381 6.54836 6.75810 6.86298 6.89276 7.01713 7.08551 7.66191 8.02208 8.32748 8.41416 8.99123 9.71098 10.19974 11.05857 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.004329 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.513847 B = 6466.717755 C = 7065.376633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C -0.023 4.023 4 C -0.147 4.147 5 C -0.232 4.232 6 S 0.198 5.802 7 C -0.265 4.265 8 C 0.589 3.411 9 O -0.529 6.529 10 N -0.713 5.713 11 C 0.155 3.845 12 H 0.080 0.920 13 C -0.147 4.147 14 C 0.146 3.854 15 N -0.593 5.593 16 C -0.275 4.275 17 H 0.077 0.923 18 C 0.052 3.948 19 N -0.879 5.879 20 Si 0.840 3.160 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.261 1.261 24 C 0.164 3.836 25 H 0.019 0.981 26 C -0.134 4.134 27 C -0.139 4.139 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.397 0.603 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.022 0.978 40 H 0.263 0.737 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 -1.247 -17.037 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.039 4.039 4 C -0.178 4.178 5 C -0.370 4.370 6 S 0.466 5.534 7 C -0.385 4.385 8 C 0.375 3.625 9 O -0.409 6.409 10 N -0.364 5.364 11 C 0.052 3.948 12 H 0.098 0.902 13 C -0.187 4.187 14 C 0.021 3.979 15 N -0.318 5.318 16 C -0.403 4.403 17 H 0.094 0.906 18 C -0.151 4.151 19 N -0.518 5.518 20 Si 0.667 3.333 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.185 1.185 24 C 0.058 3.942 25 H 0.036 0.964 26 C -0.191 4.191 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.233 0.767 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.172 -0.704 -15.927 19.468 hybrid contribution 0.677 -0.439 -2.058 2.211 sum -10.496 -1.143 -17.986 20.856 Atomic orbital electron populations 1.21592 0.94388 1.01643 1.01672 1.20396 0.96434 0.90612 1.03552 1.19501 0.96519 0.97432 0.90406 1.19897 1.04129 0.94200 0.99617 1.25245 1.08348 1.01487 1.01919 1.83266 1.59698 1.11766 0.98624 1.24564 1.16429 0.99607 0.97911 1.16886 0.77833 0.85127 0.82681 1.90759 1.46376 1.18633 1.85091 1.46099 1.66821 1.16708 1.06804 1.20933 0.98075 0.96283 0.79537 0.90244 1.22419 0.96945 0.98489 1.00896 1.21224 0.94909 0.86728 0.95060 1.44366 1.26574 1.22156 1.38690 1.18575 0.86779 1.41544 0.93414 0.90564 1.25581 0.96415 0.97389 0.95716 1.70082 1.05996 1.45442 1.30272 0.87406 0.78886 0.78718 0.88262 1.21515 1.22447 1.18550 1.20516 0.87174 0.91082 0.95436 0.96377 1.21757 1.00029 0.97803 0.99545 1.22355 0.98995 0.96516 0.99980 0.92159 0.93405 0.92439 0.91511 0.88622 0.83979 0.81513 0.76741 0.90839 0.92416 0.91591 0.95999 0.92723 0.91706 0.94300 0.92329 0.92301 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.77 37.16 0.36 -1.10 16 2 C -0.07 -0.82 5.50 -27.88 -0.15 -0.98 16 3 C -0.02 -0.29 5.16 -105.48 -0.54 -0.84 16 4 C -0.15 -1.51 9.96 -41.41 -0.41 -1.92 16 5 C -0.23 -2.27 10.92 29.18 0.32 -1.95 16 6 S 0.20 2.29 22.16 -107.50 -2.38 -0.10 16 7 C -0.26 -3.68 6.45 -36.79 -0.24 -3.91 16 8 C 0.59 9.38 7.74 -12.89 -0.10 9.28 16 9 O -0.53 -9.38 13.35 5.19 0.07 -9.31 16 10 N -0.71 -11.15 4.26 -55.10 -0.23 -11.39 16 11 C 0.16 2.52 2.78 -67.89 -0.19 2.33 16 12 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 13 C -0.15 -2.70 5.77 -26.61 -0.15 -2.85 16 14 C 0.15 3.14 4.33 -3.71 -0.02 3.12 16 15 N -0.59 -13.25 2.47 -164.78 -0.41 -13.65 16 16 C -0.28 -7.24 8.42 -15.06 -0.13 -7.37 16 17 H 0.08 2.15 6.83 -52.49 -0.36 1.79 16 18 C 0.05 1.44 4.82 -17.43 -0.08 1.35 16 19 N -0.88 -25.95 13.97 55.49 0.78 -25.17 16 20 Si 0.84 21.01 27.40 -169.99 -4.66 16.36 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.26 -6.26 5.24 56.52 0.30 -5.96 16 24 C 0.16 3.01 3.20 -67.61 -0.22 2.80 16 25 H 0.02 0.33 6.64 -51.93 -0.34 -0.01 16 26 C -0.13 -2.35 8.07 37.16 0.30 -2.05 16 27 C -0.14 -2.18 5.07 -26.61 -0.13 -2.31 16 28 H 0.06 0.77 7.57 -51.92 -0.39 0.38 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 32 H 0.10 1.33 6.34 -51.93 -0.33 1.00 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.40 6.00 5.98 -40.82 -0.24 5.75 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.56 7.02 -51.93 -0.36 1.20 16 39 H 0.02 0.48 6.30 -51.93 -0.33 0.15 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 41 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.08 7.42 -51.93 -0.39 0.69 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -29.96 359.94 -9.80 -39.76 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.01 Total: 4.47 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.39 Total: -6.39 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.13 Total: -50.21 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.66 Total: 16.36 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.38 Total: -0.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.96 -9.80 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948064521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.975 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds