Wall clock time and date at job start Tue Mar 31 2020 13:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47368 * 2 1 4 4 C 1.37468 * 123.35029 * 265.02405 * 3 2 1 5 5 C 1.33817 * 115.10030 * 179.97438 * 4 3 2 6 6 S 1.70615 * 110.95772 * 359.97438 * 5 4 3 7 7 C 1.36646 * 123.34969 * 84.72705 * 3 2 1 8 8 C 1.46588 * 125.46188 * 0.02562 * 7 3 2 9 9 O 1.21694 * 119.99416 * 0.02562 * 8 7 3 10 10 N 1.34779 * 120.00105 * 179.97438 * 8 7 3 11 11 C 1.46498 * 119.99867 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.45889 * 325.02298 * 11 10 8 13 13 C 1.53041 * 109.46148 * 85.00041 * 11 10 8 14 14 C 1.53190 * 109.30858 * 58.65611 * 13 11 10 15 15 N 1.46924 * 108.77970 * 54.63548 * 14 13 11 16 16 C 1.36940 * 120.62962 * 126.40902 * 15 14 13 17 17 H 1.07996 * 119.99780 * 221.21777 * 16 15 14 18 18 C 1.38814 * 119.99831 * 41.22295 * 16 15 14 19 19 N 1.31620 * 119.99539 * 214.82686 * 18 16 15 20 20 Si 1.86793 * 120.00382 * 34.83013 * 18 16 15 21 21 H 1.48496 * 109.47361 * 84.62421 * 20 18 16 22 22 H 1.48496 * 109.47453 * 204.62532 * 20 18 16 23 23 H 1.48509 * 109.47050 * 324.62578 * 20 18 16 24 24 C 1.46919 * 118.73800 * 306.38956 * 15 14 13 25 25 H 1.09000 * 109.58795 * 293.81840 * 24 15 14 26 26 C 1.52996 * 109.58692 * 173.39595 * 24 15 14 27 27 C 1.53045 * 109.45762 * 205.06983 * 11 10 8 28 28 H 1.09007 * 109.47077 * 300.00595 * 1 2 3 29 29 H 1.08996 * 109.47143 * 59.99832 * 1 2 3 30 30 H 1.08998 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47390 * 239.99939 * 2 1 3 32 32 H 1.09002 * 109.46854 * 119.99806 * 2 1 3 33 33 H 1.07998 * 122.45066 * 359.93889 * 4 3 2 34 34 H 1.08006 * 124.52570 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99606 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.49567 * 178.60635 * 13 11 10 37 37 H 1.08998 * 109.49658 * 298.67284 * 13 11 10 38 38 H 1.09006 * 109.58500 * 174.42511 * 14 13 11 39 39 H 1.09001 * 109.58973 * 294.70197 * 14 13 11 40 40 H 0.96999 * 119.99634 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.47650 * 60.00105 * 26 24 15 42 42 H 1.09000 * 109.47382 * 180.02562 * 26 24 15 43 43 H 1.09002 * 109.47078 * 299.99657 * 26 24 15 44 44 H 1.08997 * 109.49591 * 61.29327 * 27 11 10 45 45 H 1.08997 * 109.49436 * 181.39409 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3782 2.1001 -1.1440 5 6 2.8035 3.3544 -0.9527 6 16 2.7913 3.7568 0.7052 7 6 2.1839 2.1640 1.1366 8 6 1.8894 1.7062 2.4977 9 8 1.4732 0.5778 2.6833 10 7 2.0804 2.5346 3.5435 11 6 1.7865 2.0768 4.9037 12 1 0.9251 1.4092 4.8840 13 6 2.9989 1.3288 5.4630 14 6 4.2154 2.2597 5.4572 15 7 3.8746 3.4880 6.1878 16 6 4.6604 3.9267 7.2200 17 1 4.2043 4.3202 8.1163 18 6 6.0431 3.8658 7.1139 19 7 6.7740 3.6094 8.1781 20 14 6.8665 4.1476 5.4611 21 1 7.0483 5.6048 5.2407 22 1 8.1908 3.4759 5.4467 23 1 6.0150 3.5862 4.3817 24 6 2.6749 4.2368 5.7897 25 1 2.8147 4.6460 4.7892 26 6 2.4276 5.3746 6.7823 27 6 1.4755 3.2838 5.7918 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3121 1.6539 -2.1253 34 1 3.1132 4.0229 -1.7425 35 1 2.4125 3.4339 3.3954 36 1 2.7900 1.0094 6.4840 37 1 3.2052 0.4558 4.8437 38 1 5.0559 1.7657 5.9449 39 1 4.4826 2.5056 4.4295 40 1 7.7402 3.5665 8.1039 41 1 3.2873 6.0446 6.7886 42 1 1.5370 5.9286 6.4855 43 1 2.2819 4.9610 7.7802 44 1 0.5979 3.8026 5.4061 45 1 1.2810 2.9460 6.8097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948064521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:10 Heat of formation + Delta-G solvation = -7.727653 kcal Electronic energy + Delta-G solvation = -26068.616383 eV Core-core repulsion = 22598.232475 eV Total energy + Delta-G solvation = -3470.383908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.31800 -39.80534 -38.58633 -35.92081 -34.16843 -33.64604 -33.20059 -32.16767 -30.05643 -28.08355 -26.74554 -26.21084 -24.09960 -23.37618 -23.00472 -22.13793 -20.48191 -19.98444 -19.08875 -18.30433 -17.17068 -16.99674 -16.69284 -16.41626 -16.07294 -15.95551 -15.35269 -15.07335 -15.03342 -14.76981 -14.59883 -14.45002 -14.33533 -13.89951 -13.67635 -13.39163 -13.17486 -13.14277 -12.84541 -12.74710 -12.57108 -12.47333 -12.40182 -12.19023 -11.98837 -11.89520 -11.68294 -11.61624 -11.52347 -11.12093 -10.89536 -10.47160 -10.16956 -9.73917 -9.44346 -8.60134 -8.24091 -5.49329 -0.47172 0.50568 0.94515 1.36525 1.41707 1.43468 1.50528 2.12056 2.21156 2.48421 2.95189 3.41325 3.73788 3.88994 3.93153 4.00381 4.12689 4.17416 4.31461 4.32115 4.47556 4.50919 4.54228 4.57678 4.64312 4.77149 4.87314 4.88570 4.95499 5.00149 5.05778 5.06834 5.08253 5.12653 5.14006 5.24123 5.32346 5.41008 5.49185 5.52277 5.55962 5.62031 5.96020 6.30581 6.46458 7.03854 7.14069 7.68790 8.19523 8.95849 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.004329 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.513847 B = 6466.717755 C = 7065.376633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.212 4.212 6 S 0.195 5.805 7 C -0.304 4.304 8 C 0.586 3.414 9 O -0.556 6.556 10 N -0.712 5.712 11 C 0.162 3.838 12 H 0.086 0.914 13 C -0.138 4.138 14 C 0.150 3.850 15 N -0.603 5.603 16 C -0.254 4.254 17 H 0.051 0.949 18 C 0.000 4.000 19 N -0.928 5.928 20 Si 0.895 3.105 21 H -0.288 1.288 22 H -0.307 1.307 23 H -0.246 1.246 24 C 0.157 3.843 25 H 0.034 0.966 26 C -0.128 4.128 27 C -0.127 4.127 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.171 0.829 34 H 0.200 0.800 35 H 0.400 0.600 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 -0.516 -20.477 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 C -0.037 4.037 4 C -0.185 4.185 5 C -0.350 4.350 6 S 0.463 5.537 7 C -0.424 4.424 8 C 0.374 3.626 9 O -0.437 6.437 10 N -0.364 5.364 11 C 0.058 3.942 12 H 0.104 0.896 13 C -0.178 4.178 14 C 0.025 3.975 15 N -0.328 5.328 16 C -0.383 4.383 17 H 0.068 0.932 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.723 3.277 21 H -0.215 1.215 22 H -0.235 1.235 23 H -0.170 1.170 24 C 0.052 3.948 25 H 0.051 0.949 26 C -0.186 4.186 27 C -0.166 4.166 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.189 0.811 34 H 0.217 0.783 35 H 0.236 0.764 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.838 0.044 -19.406 23.268 hybrid contribution 1.106 -0.679 -1.035 1.660 sum -11.732 -0.635 -20.441 23.577 Atomic orbital electron populations 1.21536 0.93803 1.02152 1.01206 1.20409 0.96921 0.90470 1.03329 1.19817 0.95411 0.97600 0.90873 1.20140 1.04031 0.94329 1.00045 1.25666 1.06240 1.01638 1.01455 1.83234 1.59658 1.10475 1.00283 1.24457 1.19328 1.01438 0.97162 1.17210 0.77107 0.84715 0.83548 1.90740 1.47576 1.19663 1.85694 1.46042 1.67015 1.16869 1.06445 1.20806 0.96929 0.96446 0.80061 0.89627 1.22278 0.96672 0.97961 1.00866 1.21106 0.95323 0.86850 0.94255 1.44471 1.27236 1.22989 1.38115 1.18499 0.86980 1.39274 0.93575 0.93185 1.26051 0.97215 0.98474 0.98087 1.70172 1.06006 1.48588 1.32252 0.86518 0.77684 0.78245 0.85292 1.21528 1.23503 1.17016 1.20776 0.86189 0.91660 0.96170 0.94893 1.21703 1.00884 0.97333 0.98667 1.22242 0.98746 0.95693 0.99928 0.94622 0.91712 0.91510 0.89087 0.91412 0.81147 0.78296 0.76359 0.91313 0.92615 0.94622 0.96002 0.93024 0.93959 0.90284 0.93828 0.89002 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.77 71.98 0.70 -1.89 16 2 C -0.07 -1.57 5.50 29.85 0.16 -1.40 16 3 C -0.02 -0.48 5.16 -20.42 -0.11 -0.58 16 4 C -0.15 -2.61 9.96 21.08 0.21 -2.40 16 5 C -0.21 -3.30 10.92 66.81 0.73 -2.57 16 6 S 0.19 4.01 22.16 -56.49 -1.25 2.76 16 7 C -0.30 -7.97 6.45 24.08 0.16 -7.82 16 8 C 0.59 18.20 7.74 86.42 0.67 18.87 16 9 O -0.56 -19.64 13.35 -4.33 -0.06 -19.70 16 10 N -0.71 -21.22 4.26 -446.45 -1.90 -23.12 16 11 C 0.16 5.01 2.78 45.02 0.13 5.13 16 12 H 0.09 2.62 7.58 -2.38 -0.02 2.60 16 13 C -0.14 -5.01 5.77 30.67 0.18 -4.83 16 14 C 0.15 6.43 4.33 86.36 0.37 6.81 16 15 N -0.60 -26.77 2.47 -675.25 -1.67 -28.43 16 16 C -0.25 -13.61 8.42 84.03 0.71 -12.90 16 17 H 0.05 2.92 6.83 -2.91 -0.02 2.90 16 18 C 0.00 0.02 4.82 84.86 0.41 0.43 16 19 N -0.93 -56.71 13.97 21.65 0.30 -56.41 16 20 Si 0.90 44.20 27.40 68.60 1.88 46.08 16 21 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 22 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 23 H -0.25 -11.38 5.24 99.48 0.52 -10.86 16 24 C 0.16 5.48 3.20 44.97 0.14 5.62 16 25 H 0.03 1.10 6.64 -2.39 -0.02 1.09 16 26 C -0.13 -4.30 8.07 71.98 0.58 -3.72 16 27 C -0.13 -3.67 5.07 30.67 0.16 -3.52 16 28 H 0.03 0.88 7.57 -2.38 -0.02 0.86 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.49 8.12 -2.39 -0.02 1.47 16 32 H 0.07 1.88 6.34 -2.39 -0.02 1.86 16 33 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.40 11.29 5.98 -92.71 -0.55 10.74 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.72 7.02 -2.38 -0.02 1.71 16 39 H 0.02 0.95 6.30 -2.39 -0.02 0.93 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.04 1.59 7.68 -2.39 -0.02 1.57 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.04 1.57 7.42 -2.39 -0.02 1.55 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -66.98 359.94 2.76 -64.23 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.25 Total: 19.36 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.20 Total: -4.76 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -3.27 Total: -107.96 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.25 Total: 2.76 kcal Total: -66.98 2.76 -64.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948064521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.498 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds