Wall clock time and date at job start Tue Mar 31 2020 13:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.50705 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.33816 * 124.51618 * 90.00412 * 4 3 2 6 6 C 1.37477 * 115.10211 * 179.97438 * 5 4 3 7 7 C 1.36651 * 113.29235 * 359.97438 * 6 5 4 8 8 C 1.46579 * 125.45468 * 179.97438 * 7 6 5 9 9 O 1.21699 * 120.00609 * 356.41534 * 8 7 6 10 10 N 1.34783 * 119.99907 * 176.41494 * 8 7 6 11 11 C 1.46498 * 119.99897 * 5.51587 * 10 8 7 12 12 C 1.53004 * 109.47257 * 276.61501 * 11 10 8 13 13 C 1.46498 * 119.99928 * 185.51800 * 10 8 7 14 14 C 1.53944 * 113.74416 * 43.29788 * 13 10 8 15 15 N 1.47815 * 86.03733 * 222.08483 * 14 13 10 16 16 C 1.36929 * 134.45546 * 204.64768 * 15 14 13 17 17 H 1.08004 * 120.00234 * 184.79847 * 16 15 14 18 18 C 1.38817 * 120.00255 * 4.79870 * 16 15 14 19 19 N 1.31617 * 120.00006 * 5.09227 * 18 16 15 20 20 Si 1.86800 * 119.99936 * 185.09009 * 18 16 15 21 21 H 1.48508 * 109.46917 * 94.99736 * 20 18 16 22 22 H 1.48497 * 109.47360 * 214.99658 * 20 18 16 23 23 H 1.48493 * 109.47386 * 334.99989 * 20 18 16 24 24 C 1.47587 * 91.05014 * 24.54767 * 15 14 13 25 25 S 1.70617 * 124.52715 * 270.27250 * 4 3 2 26 26 H 1.08995 * 109.46835 * 59.99474 * 1 2 3 27 27 H 1.09000 * 109.46712 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47006 * 299.99891 * 1 2 3 29 29 H 1.09003 * 109.47006 * 240.00109 * 2 1 3 30 30 H 1.09001 * 109.47228 * 120.00357 * 2 1 3 31 31 H 1.09002 * 109.46648 * 60.00405 * 3 2 1 32 32 H 1.09001 * 109.47391 * 300.00258 * 3 2 1 33 33 H 1.08004 * 122.45293 * 0.02562 * 5 4 3 34 34 H 1.07990 * 123.35308 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47094 * 36.61343 * 11 10 8 36 36 H 1.08996 * 109.47195 * 156.61701 * 11 10 8 37 37 H 1.09001 * 109.47303 * 300.00227 * 12 11 10 38 38 H 1.08996 * 109.46855 * 59.99992 * 12 11 10 39 39 H 1.08998 * 109.46917 * 179.97438 * 12 11 10 40 40 H 1.08997 * 112.94078 * 174.88557 * 13 10 8 41 41 H 1.09001 * 113.76688 * 336.34740 * 14 13 10 42 42 H 1.09002 * 113.77379 * 107.74222 * 14 13 10 43 43 H 0.96991 * 120.00131 * 180.02562 * 19 18 16 44 44 H 1.08998 * 113.76267 * 221.15983 * 24 15 14 45 45 H 1.08996 * 113.76725 * 89.75401 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3058 1.4424 -1.1016 6 6 5.6619 1.4429 -0.8762 7 6 5.9891 1.4441 0.4506 8 6 7.3520 1.4443 0.9902 9 8 8.3051 1.3776 0.2363 10 7 7.5497 1.5184 2.3214 11 6 6.4055 1.4769 3.2352 12 6 5.8009 2.8769 3.3596 13 6 8.9088 1.6406 2.8543 14 6 9.7899 2.6395 2.0824 15 7 10.8651 1.6335 2.2116 16 6 12.2334 1.6861 2.2062 17 1 12.8091 0.7732 2.2442 18 6 12.8806 2.9130 2.1520 19 7 12.1833 4.0279 2.2069 20 14 14.7412 2.9816 2.0012 21 1 15.1172 3.1196 0.5712 22 1 15.2570 4.1470 2.7633 23 1 15.3286 1.7327 2.5491 24 6 9.8722 0.5505 2.3511 25 16 4.5135 1.4360 1.4067 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8900 33 1 3.8837 1.4427 -2.0958 34 1 6.3955 1.4433 -1.6687 35 1 5.6542 0.7900 2.8457 36 1 6.7361 1.1355 4.2161 37 1 6.5522 3.5639 3.7491 38 1 5.4702 3.2182 2.3787 39 1 4.9493 2.8458 4.0392 40 1 8.9304 1.7806 3.9351 41 1 9.4667 2.8076 1.0550 42 1 9.9845 3.5645 2.6251 43 1 12.6354 4.8851 2.1687 44 1 10.1326 -0.1892 3.1081 45 1 9.5733 0.1037 1.4029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950432913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:44 Heat of formation + Delta-G solvation = 59.488229 kcal Electronic energy + Delta-G solvation = -25197.521422 eV Core-core repulsion = 21730.052214 eV Total energy + Delta-G solvation = -3467.469208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09425 -38.21082 -36.75394 -35.52656 -35.01280 -32.09870 -30.41107 -30.17709 -27.75978 -26.61919 -24.64751 -24.21914 -23.34190 -23.10784 -21.72324 -20.93080 -19.37898 -18.48688 -17.26146 -16.66712 -16.30671 -15.66550 -15.22100 -15.06369 -15.03033 -14.56915 -14.18602 -14.01089 -13.79904 -13.66325 -13.18248 -12.96333 -12.82658 -12.66210 -12.30942 -12.28491 -11.83219 -11.68950 -11.65664 -11.62056 -11.40298 -11.32073 -11.16275 -11.05909 -10.79809 -10.63330 -10.38239 -10.05545 -9.88807 -9.48439 -9.34373 -8.64795 -8.58612 -8.35087 -8.07314 -6.70131 -5.65035 -2.97216 0.58507 1.51549 1.95512 2.47251 3.21556 3.46217 3.50189 3.51711 3.52806 4.44500 4.56421 4.62726 4.65234 4.72317 4.83907 5.05469 5.09549 5.18014 5.29259 5.33213 5.37228 5.41820 5.44961 5.55555 5.59998 5.64552 5.71224 5.72634 5.76932 5.80088 5.88191 5.92575 6.03971 6.20103 6.21214 6.39505 6.43670 6.65046 6.66737 6.99577 7.40288 7.63606 7.66406 7.77084 8.09685 8.54287 9.15176 9.81782 10.73119 11.50940 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032316 B = 0.002817 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.226778 B = 9937.772854 C =10258.196144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.049 4.049 4 C -0.237 4.237 5 C -0.154 4.154 6 C -0.057 4.057 7 C -0.263 4.263 8 C 0.581 3.419 9 O -0.502 6.502 10 N -0.600 5.600 11 C 0.097 3.903 12 C -0.183 4.183 13 C 0.093 3.907 14 C 0.149 3.851 15 N -0.603 5.603 16 C -0.214 4.214 17 H 0.078 0.922 18 C -0.011 4.011 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.111 3.889 25 S 0.231 5.769 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.859 -5.613 0.214 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.087 4.087 4 C -0.355 4.355 5 C -0.184 4.184 6 C -0.090 4.090 7 C -0.383 4.383 8 C 0.368 3.632 9 O -0.378 6.378 10 N -0.333 5.333 11 C -0.029 4.029 12 C -0.242 4.242 13 C -0.010 4.010 14 C 0.024 3.976 15 N -0.330 5.330 16 C -0.342 4.342 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.016 4.016 25 S 0.501 5.499 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.341 -5.504 1.346 25.967 hybrid contribution 1.170 0.110 -1.850 2.192 sum -24.171 -5.394 -0.504 24.770 Atomic orbital electron populations 1.21784 0.95480 1.01846 1.01893 1.21561 0.95749 0.95828 1.02708 1.20176 0.87810 0.97665 1.03095 1.24992 1.01495 1.07789 1.01202 1.19860 0.92582 1.06690 0.99284 1.20710 0.96097 0.96850 0.95351 1.24802 0.96888 1.18621 0.97976 1.16981 0.86567 0.77470 0.82194 1.90905 1.41056 1.48086 1.57740 1.48021 1.07655 1.72728 1.04892 1.21758 0.88295 0.97467 0.95382 1.22509 1.01502 0.97266 1.02964 1.24132 0.77047 1.01205 0.98642 1.22808 0.83359 0.93695 0.97781 1.45612 1.00237 1.02718 1.84390 1.18993 0.79237 0.92737 1.43223 0.90375 1.24773 0.97919 0.95179 1.02817 1.69825 1.33752 0.96549 1.56574 0.86097 0.85074 0.77015 0.77588 1.21734 1.21773 1.20608 1.22979 0.88176 0.92417 0.98039 1.83706 0.93451 1.67582 1.05118 0.92646 0.92541 0.92626 0.91593 0.91743 0.90905 0.90384 0.84838 0.83251 0.91116 0.88725 0.91085 0.91408 0.91112 0.87609 0.93275 0.90646 0.93811 0.94505 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 3 C -0.05 -0.36 5.65 -27.88 -0.16 -0.51 16 4 C -0.24 -2.36 5.53 -35.86 -0.20 -2.56 16 5 C -0.15 -1.71 9.99 -41.41 -0.41 -2.12 16 6 C -0.06 -0.78 10.01 -40.43 -0.40 -1.19 16 7 C -0.26 -3.85 6.00 -36.79 -0.22 -4.07 16 8 C 0.58 10.64 7.00 -12.89 -0.09 10.55 16 9 O -0.50 -11.46 12.56 5.19 0.07 -11.39 16 10 N -0.60 -9.92 2.75 -169.48 -0.47 -10.39 16 11 C 0.10 1.12 5.69 -4.04 -0.02 1.10 16 12 C -0.18 -1.90 8.88 37.16 0.33 -1.57 16 13 C 0.09 1.85 4.58 -70.14 -0.32 1.53 16 14 C 0.15 3.83 6.99 -2.84 -0.02 3.81 16 15 N -0.60 -16.72 3.70 -177.87 -0.66 -17.38 16 16 C -0.21 -6.37 10.69 -15.06 -0.16 -6.53 16 17 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.92 -28.47 11.29 55.49 0.63 -27.85 16 20 Si 0.91 23.12 29.56 -169.99 -5.02 18.10 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.11 2.53 8.27 -2.96 -0.02 2.50 16 25 S 0.23 2.40 15.18 -107.50 -1.63 0.76 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.07 0.73 4.58 -22.51 -0.10 0.63 16 36 H 0.09 0.93 7.92 -51.93 -0.41 0.52 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.76 5.74 -40.25 -0.23 0.53 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 1.92 7.96 -51.93 -0.41 1.51 16 41 H 0.05 1.37 5.76 -51.93 -0.30 1.07 16 42 H 0.08 2.09 6.87 -51.93 -0.36 1.73 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.25 6.24 -51.93 -0.32 0.93 16 LS Contribution 365.72 15.07 5.51 5.51 Total: -1.00 -34.93 365.72 -9.93 -44.86 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.76 Total: -1.33 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.59 Total: -0.90 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.50 Total: -55.61 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.63 Total: 0.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.93 -9.93 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950432913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.344 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds