Wall clock time and date at job start Tue Mar 31 2020 13:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.50705 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.33816 * 124.51618 * 90.00412 * 4 3 2 6 6 C 1.37477 * 115.10211 * 179.97438 * 5 4 3 7 7 C 1.36651 * 113.29235 * 359.97438 * 6 5 4 8 8 C 1.46579 * 125.45468 * 179.97438 * 7 6 5 9 9 O 1.21699 * 120.00609 * 356.41534 * 8 7 6 10 10 N 1.34783 * 119.99907 * 176.41494 * 8 7 6 11 11 C 1.46498 * 119.99897 * 5.51587 * 10 8 7 12 12 C 1.53004 * 109.47257 * 276.61501 * 11 10 8 13 13 C 1.46498 * 119.99928 * 185.51800 * 10 8 7 14 14 C 1.53944 * 113.74416 * 43.29788 * 13 10 8 15 15 N 1.47815 * 86.03733 * 222.08483 * 14 13 10 16 16 C 1.36929 * 134.45546 * 204.64768 * 15 14 13 17 17 H 1.08004 * 120.00234 * 184.79847 * 16 15 14 18 18 C 1.38817 * 120.00255 * 4.79870 * 16 15 14 19 19 N 1.31617 * 120.00006 * 5.09227 * 18 16 15 20 20 Si 1.86800 * 119.99936 * 185.09009 * 18 16 15 21 21 H 1.48508 * 109.46917 * 94.99736 * 20 18 16 22 22 H 1.48497 * 109.47360 * 214.99658 * 20 18 16 23 23 H 1.48493 * 109.47386 * 334.99989 * 20 18 16 24 24 C 1.47587 * 91.05014 * 24.54767 * 15 14 13 25 25 S 1.70617 * 124.52715 * 270.27250 * 4 3 2 26 26 H 1.08995 * 109.46835 * 59.99474 * 1 2 3 27 27 H 1.09000 * 109.46712 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47006 * 299.99891 * 1 2 3 29 29 H 1.09003 * 109.47006 * 240.00109 * 2 1 3 30 30 H 1.09001 * 109.47228 * 120.00357 * 2 1 3 31 31 H 1.09002 * 109.46648 * 60.00405 * 3 2 1 32 32 H 1.09001 * 109.47391 * 300.00258 * 3 2 1 33 33 H 1.08004 * 122.45293 * 0.02562 * 5 4 3 34 34 H 1.07990 * 123.35308 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47094 * 36.61343 * 11 10 8 36 36 H 1.08996 * 109.47195 * 156.61701 * 11 10 8 37 37 H 1.09001 * 109.47303 * 300.00227 * 12 11 10 38 38 H 1.08996 * 109.46855 * 59.99992 * 12 11 10 39 39 H 1.08998 * 109.46917 * 179.97438 * 12 11 10 40 40 H 1.08997 * 112.94078 * 174.88557 * 13 10 8 41 41 H 1.09001 * 113.76688 * 336.34740 * 14 13 10 42 42 H 1.09002 * 113.77379 * 107.74222 * 14 13 10 43 43 H 0.96991 * 120.00131 * 180.02562 * 19 18 16 44 44 H 1.08998 * 113.76267 * 221.15983 * 24 15 14 45 45 H 1.08996 * 113.76725 * 89.75401 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3058 1.4424 -1.1016 6 6 5.6619 1.4429 -0.8762 7 6 5.9891 1.4441 0.4506 8 6 7.3520 1.4443 0.9902 9 8 8.3051 1.3776 0.2363 10 7 7.5497 1.5184 2.3214 11 6 6.4055 1.4769 3.2352 12 6 5.8009 2.8769 3.3596 13 6 8.9088 1.6406 2.8543 14 6 9.7899 2.6395 2.0824 15 7 10.8651 1.6335 2.2116 16 6 12.2334 1.6861 2.2062 17 1 12.8091 0.7732 2.2442 18 6 12.8806 2.9130 2.1520 19 7 12.1833 4.0279 2.2069 20 14 14.7412 2.9816 2.0012 21 1 15.1172 3.1196 0.5712 22 1 15.2570 4.1470 2.7633 23 1 15.3286 1.7327 2.5491 24 6 9.8722 0.5505 2.3511 25 16 4.5135 1.4360 1.4067 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8900 33 1 3.8837 1.4427 -2.0958 34 1 6.3955 1.4433 -1.6687 35 1 5.6542 0.7900 2.8457 36 1 6.7361 1.1355 4.2161 37 1 6.5522 3.5639 3.7491 38 1 5.4702 3.2182 2.3787 39 1 4.9493 2.8458 4.0392 40 1 8.9304 1.7806 3.9351 41 1 9.4667 2.8076 1.0550 42 1 9.9845 3.5645 2.6251 43 1 12.6354 4.8851 2.1687 44 1 10.1326 -0.1892 3.1081 45 1 9.5733 0.1037 1.4029 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950432913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:43 Heat of formation + Delta-G solvation = 37.990620 kcal Electronic energy + Delta-G solvation = -25198.453628 eV Core-core repulsion = 21730.052214 eV Total energy + Delta-G solvation = -3468.401415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57969 -39.27705 -38.35424 -36.85657 -35.69403 -34.21579 -31.54383 -31.16963 -29.44532 -27.83031 -26.60279 -25.47315 -24.67412 -24.14263 -22.46283 -22.24959 -20.92324 -19.52986 -18.78957 -18.45768 -17.56113 -17.00625 -16.65006 -16.38902 -16.19961 -15.78570 -15.61676 -15.26021 -14.76817 -14.69364 -14.37560 -14.24090 -14.05788 -13.76119 -13.53847 -13.47243 -13.27163 -13.07568 -12.88264 -12.74414 -12.65210 -12.45716 -12.32115 -12.26681 -12.02002 -11.94093 -11.89457 -11.59854 -11.52200 -11.27003 -11.04838 -10.63681 -9.75748 -9.43619 -9.18914 -8.89396 -7.90758 -5.26300 -0.43809 0.55396 1.04167 1.41618 1.44511 1.45780 1.54399 1.89439 2.21944 2.47581 3.25557 3.48198 3.54659 3.77426 3.80708 3.90423 4.11883 4.21266 4.23387 4.28316 4.34510 4.45750 4.50421 4.56438 4.67393 4.75801 4.79620 4.83259 4.89173 4.91501 5.00351 5.01137 5.11063 5.19995 5.23231 5.25379 5.29633 5.33744 5.37853 5.47693 5.48117 5.52022 5.82539 5.91453 6.40730 6.89000 7.16607 7.57966 8.55687 9.24990 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032316 B = 0.002817 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.226778 B = 9937.772854 C =10258.196144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.050 4.050 4 C -0.223 4.223 5 C -0.168 4.168 6 C -0.062 4.062 7 C -0.311 4.311 8 C 0.575 3.425 9 O -0.564 6.564 10 N -0.598 5.598 11 C 0.088 3.912 12 C -0.182 4.182 13 C 0.130 3.870 14 C 0.148 3.852 15 N -0.632 5.632 16 C -0.234 4.234 17 H 0.082 0.918 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.984 3.016 21 H -0.293 1.293 22 H -0.288 1.288 23 H -0.263 1.263 24 C 0.111 3.889 25 S 0.305 5.695 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.018 0.982 42 H 0.047 0.953 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.820 -6.453 1.981 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.088 4.088 4 C -0.342 4.342 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.431 4.431 8 C 0.365 3.635 9 O -0.445 6.445 10 N -0.330 5.330 11 C -0.035 4.035 12 C -0.241 4.241 13 C 0.026 3.974 14 C 0.021 3.979 15 N -0.359 5.359 16 C -0.363 4.363 17 H 0.100 0.900 18 C -0.263 4.263 19 N -0.600 5.600 20 Si 0.811 3.189 21 H -0.220 1.220 22 H -0.214 1.214 23 H -0.187 1.187 24 C -0.015 4.015 25 S 0.576 5.424 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.035 0.965 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -28.365 -6.375 3.157 29.243 hybrid contribution 1.917 0.343 -2.448 3.128 sum -26.448 -6.032 0.709 27.136 Atomic orbital electron populations 1.21767 0.94315 1.02259 1.02471 1.21553 0.96741 0.95084 1.02392 1.20339 0.85452 0.98510 1.04545 1.25471 1.03113 1.04782 1.00794 1.19928 0.91292 1.07721 1.00786 1.20798 0.97248 0.96689 0.94910 1.24544 0.97125 1.22082 0.99313 1.17555 0.87570 0.76116 0.82301 1.90861 1.43460 1.50954 1.59255 1.47981 1.07722 1.72011 1.05264 1.22173 0.86892 0.98904 0.95532 1.22515 1.02481 0.95831 1.03224 1.23467 0.78307 0.96728 0.98944 1.22593 0.84964 0.93733 0.96566 1.46038 1.00446 1.04947 1.84450 1.19418 0.80830 0.93119 1.42922 0.90042 1.25714 1.02919 0.94782 1.02873 1.70034 1.35528 0.96857 1.57624 0.84986 0.79148 0.77626 0.77124 1.22026 1.21390 1.18724 1.23030 0.87847 0.92672 0.97942 1.83158 0.89867 1.65730 1.03617 0.92282 0.92283 0.91863 0.92307 0.91781 0.89192 0.89281 0.83075 0.85192 0.89471 0.85973 0.92463 0.92539 0.87083 0.84757 0.96468 0.93439 0.94252 0.92211 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.22 5.92 30.60 0.18 -1.04 16 3 C -0.05 -0.54 5.65 29.85 0.17 -0.38 16 4 C -0.22 -3.83 5.53 24.68 0.14 -3.69 16 5 C -0.17 -3.54 9.99 21.08 0.21 -3.33 16 6 C -0.06 -1.76 10.01 21.72 0.22 -1.54 16 7 C -0.31 -9.19 6.00 24.08 0.14 -9.04 16 8 C 0.57 21.95 7.00 86.42 0.61 22.55 16 9 O -0.56 -27.86 12.56 -4.35 -0.05 -27.92 16 10 N -0.60 -19.67 2.75 -808.31 -2.22 -21.89 16 11 C 0.09 1.80 5.69 86.38 0.49 2.29 16 12 C -0.18 -3.23 8.88 71.98 0.64 -2.60 16 13 C 0.13 5.22 4.58 46.75 0.21 5.43 16 14 C 0.15 7.97 6.99 86.44 0.60 8.58 16 15 N -0.63 -36.35 3.70 -716.65 -2.65 -39.00 16 16 C -0.23 -14.34 10.69 84.04 0.90 -13.45 16 17 H 0.08 4.76 7.83 -2.91 -0.02 4.74 16 18 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 19 N -0.95 -61.17 11.29 21.65 0.24 -60.93 16 20 Si 0.98 48.57 29.56 68.60 2.03 50.60 16 21 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 24 C 0.11 5.17 8.27 86.48 0.72 5.89 16 25 S 0.31 5.48 15.18 -56.49 -0.86 4.62 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.13 4.05 8.06 -2.92 -0.02 4.02 16 35 H 0.09 1.50 4.58 -21.10 -0.10 1.41 16 36 H 0.12 1.88 7.92 -2.39 -0.02 1.87 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.14 5.74 -9.82 -0.06 1.09 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.13 4.66 7.96 -2.39 -0.02 4.64 16 41 H 0.02 1.05 5.76 -2.39 -0.01 1.04 16 42 H 0.05 2.79 6.87 -2.39 -0.02 2.77 16 43 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.03 1.76 6.24 -2.39 -0.01 1.74 16 Total: -1.00 -81.93 365.72 3.75 -78.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.85 Total: 10.90 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.41 Total: 5.44 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -4.63 Total: -121.82 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -0.86 Total: 4.62 kcal Total: -81.93 3.75 -78.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950432913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.171 kcal (2) G-P(sol) polarization free energy of solvation -81.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds