Wall clock time and date at job start Tue Mar 31 2020 13:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.46971 * 2 1 4 4 S 1.70615 * 124.52302 * 270.02544 * 3 2 1 5 5 C 1.75832 * 91.56398 * 179.97438 * 4 3 2 6 6 C 1.46585 * 125.45886 * 179.97438 * 5 4 3 7 7 O 1.21707 * 119.99680 * 185.40507 * 6 5 4 8 8 N 1.34767 * 119.99936 * 5.40453 * 6 5 4 9 9 C 1.46504 * 120.00216 * 4.49608 * 8 6 5 10 10 C 1.53000 * 109.46805 * 273.83365 * 9 8 6 11 11 C 1.46504 * 120.00202 * 184.49021 * 8 6 5 12 12 C 1.53493 * 114.20554 * 300.00599 * 11 8 6 13 13 N 1.47068 * 87.98819 * 87.51718 * 12 11 8 14 14 C 1.36942 * 136.05545 * 207.08551 * 13 12 11 15 15 H 1.07995 * 120.00423 * 355.18010 * 14 13 12 16 16 C 1.38807 * 119.99722 * 175.17997 * 14 13 12 17 17 N 1.31617 * 120.00065 * 184.64090 * 16 14 13 18 18 Si 1.86803 * 119.99888 * 4.63985 * 16 14 13 19 19 H 1.48508 * 109.46924 * 174.41226 * 18 16 14 20 20 H 1.48501 * 109.47087 * 294.40888 * 18 16 14 21 21 H 1.48493 * 109.47121 * 54.41359 * 18 16 14 22 22 C 1.47066 * 87.88366 * 27.34054 * 13 12 11 23 23 C 1.36644 * 109.08372 * 0.26555 * 5 4 3 24 24 C 1.33815 * 124.52320 * 90.00338 * 3 2 1 25 25 C 1.50701 * 122.44880 * 0.04075 * 24 3 2 26 26 H 1.09000 * 109.47186 * 59.99728 * 1 2 3 27 27 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99977 * 1 2 3 29 29 H 1.08994 * 109.46833 * 240.00411 * 2 1 3 30 30 H 1.09000 * 109.47186 * 120.00272 * 2 1 3 31 31 H 1.08996 * 109.47079 * 33.83430 * 9 8 6 32 32 H 1.08998 * 109.47098 * 153.83316 * 9 8 6 33 33 H 1.09000 * 109.46853 * 179.97438 * 10 9 8 34 34 H 1.09004 * 109.47058 * 299.99918 * 10 9 8 35 35 H 1.08998 * 109.47333 * 60.00095 * 10 9 8 36 36 H 1.08993 * 113.28372 * 166.93622 * 11 8 6 37 37 H 1.09001 * 113.47146 * 332.73620 * 12 11 8 38 38 H 1.09003 * 113.47171 * 202.29802 * 12 11 8 39 39 H 0.96998 * 119.99971 * 4.99972 * 17 16 14 40 40 H 1.09003 * 113.46420 * 87.44264 * 22 13 12 41 41 H 1.08996 * 113.46614 * 217.87667 * 22 13 12 42 42 H 1.08006 * 123.35510 * 179.73540 * 23 5 4 43 43 H 1.09001 * 109.47205 * 89.99770 * 25 24 3 44 44 H 1.08998 * 109.47352 * 210.00474 * 25 24 3 45 45 H 1.09005 * 109.47348 * 330.00190 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8455 3.7238 -0.4491 6 6 3.2997 5.0089 -0.9883 7 8 3.7104 5.8733 -0.2363 8 7 3.2627 5.2333 -2.3166 9 6 2.6777 4.2326 -3.2126 10 6 3.7430 3.2015 -3.5904 11 6 3.8073 6.4779 -2.8648 12 6 3.1287 7.7488 -2.3354 13 7 4.0835 7.7304 -1.2169 14 6 4.0941 8.1761 0.0779 15 1 3.2633 8.7523 0.4575 16 6 5.1727 7.8873 0.9024 17 7 5.1431 8.2360 2.1712 18 14 6.6664 7.0036 0.2113 19 1 7.7256 6.9353 1.2499 20 1 6.2831 5.6280 -0.1961 21 1 7.1778 7.7451 -0.9693 22 6 5.0242 7.0284 -2.1030 23 6 2.7423 3.4127 0.8775 24 6 2.2852 2.1358 1.1025 25 6 2.0897 1.5797 2.4894 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8508 3.7326 -2.7083 32 1 2.3104 4.7226 -4.1142 33 1 3.3077 2.4567 -4.2566 34 1 4.5700 3.7015 -4.0947 35 1 4.1103 2.7114 -2.6887 36 1 3.9297 6.4546 -3.9476 37 1 2.0951 7.5925 -2.0264 38 1 3.2469 8.6102 -2.9929 39 1 4.3401 8.6292 2.5475 40 1 5.6422 7.6998 -2.6992 41 1 5.6056 6.2583 -1.5961 42 1 2.9917 4.1024 1.6703 43 1 3.0116 1.1036 2.8233 44 1 1.8306 2.3889 3.1722 45 1 1.2853 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957360224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:08 Heat of formation + Delta-G solvation = 107.053424 kcal Electronic energy + Delta-G solvation = -26669.660557 eV Core-core repulsion = 23204.253930 eV Total energy + Delta-G solvation = -3465.406627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.12798 -38.51509 -36.74426 -35.33516 -33.64366 -32.06142 -30.20312 -30.03052 -27.64555 -27.21018 -25.23207 -24.92173 -23.10259 -22.76365 -21.96990 -20.13126 -18.68421 -18.05270 -17.36068 -17.21854 -16.25881 -15.61302 -15.13757 -14.72874 -14.46289 -14.30715 -14.19689 -13.92099 -13.54955 -13.48354 -13.22207 -12.93162 -12.88541 -12.63923 -12.42876 -12.16037 -12.02283 -12.01593 -11.61464 -11.48871 -11.30877 -11.16095 -11.07179 -10.95738 -10.75471 -10.35820 -10.28910 -10.13217 -9.17664 -9.00872 -8.73575 -8.36325 -8.22396 -8.04306 -7.89930 -6.60154 -5.93632 -2.78599 0.85800 1.76798 2.18183 2.68913 3.32974 3.58749 3.68014 3.80942 4.01046 4.68310 4.76390 4.88152 4.91065 4.92887 5.04693 5.06469 5.12702 5.29535 5.31920 5.36738 5.44334 5.50668 5.64636 5.65190 5.66458 5.70347 5.75284 5.76648 5.89396 5.90782 5.95547 6.08228 6.11719 6.18000 6.28056 6.31056 6.40454 6.52213 6.54013 6.67398 6.74476 7.28720 7.40247 7.94975 8.54783 9.06967 9.32795 9.91012 10.72203 11.59786 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.005378 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.633529 B = 5204.917034 C = 6281.819072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C -0.244 4.244 4 S 0.203 5.797 5 C -0.243 4.243 6 C 0.536 3.464 7 O -0.396 6.396 8 N -0.601 5.601 9 C 0.098 3.902 10 C -0.183 4.183 11 C 0.106 3.894 12 C 0.106 3.894 13 N -0.598 5.598 14 C -0.250 4.250 15 H 0.072 0.928 16 C -0.015 4.015 17 N -0.952 5.952 18 Si 1.081 2.919 19 H -0.307 1.307 20 H -0.294 1.294 21 H -0.300 1.300 22 C 0.086 3.914 23 C -0.060 4.060 24 C -0.117 4.117 25 C -0.094 4.094 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.254 0.746 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.151 0.849 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 -18.190 -11.723 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.362 4.362 4 S 0.473 5.527 5 C -0.364 4.364 6 C 0.320 3.680 7 O -0.263 6.263 8 N -0.337 5.337 9 C -0.028 4.028 10 C -0.242 4.242 11 C 0.001 3.999 12 C -0.022 4.022 13 N -0.326 5.326 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.597 5.597 18 Si 0.918 3.082 19 H -0.236 1.236 20 H -0.223 1.223 21 H -0.228 1.228 22 C -0.041 4.041 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.152 4.152 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.169 0.831 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.900 -18.445 -12.142 23.135 hybrid contribution -1.559 0.698 1.038 1.999 sum -8.460 -17.747 -11.104 22.579 Atomic orbital electron populations 1.21776 0.94613 1.01575 1.02483 1.20016 0.95899 0.90200 1.02711 1.24635 1.08934 1.02225 1.00413 1.83539 1.60802 1.02618 1.05729 1.25003 1.14656 0.98980 0.97714 1.17517 0.81775 0.85733 0.82967 1.91584 1.39122 1.39420 1.56158 1.47335 1.62330 1.18391 1.05690 1.21717 0.95731 0.90409 0.94895 1.22506 1.00138 0.99181 1.02390 1.22673 0.97291 0.84246 0.95653 1.22753 0.95345 0.93766 0.90378 1.45703 1.11911 1.68363 1.06590 1.19787 1.06214 1.28360 0.83223 0.91037 1.25282 1.01544 0.99999 0.94322 1.70922 1.30479 1.46494 1.11834 0.83575 0.75680 0.75813 0.73139 1.23592 1.22327 1.22836 1.23096 0.93670 0.95278 0.92023 1.20662 0.97018 0.95755 0.95758 1.18598 1.04118 0.94019 0.96185 1.20501 1.01591 1.00817 0.92338 0.92532 0.92334 0.92321 0.91234 0.90519 0.90389 0.89507 0.91251 0.91621 0.91279 0.88999 0.94076 0.94083 0.93670 0.93762 0.92318 0.83105 0.91556 0.91476 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.90 37.16 0.37 -0.85 16 2 C -0.05 -0.47 5.72 -27.88 -0.16 -0.62 16 3 C -0.24 -3.09 5.53 -35.86 -0.20 -3.29 16 4 S 0.20 2.57 15.07 -107.50 -1.62 0.95 16 5 C -0.24 -4.36 6.16 -36.79 -0.23 -4.59 16 6 C 0.54 11.27 7.13 -12.90 -0.09 11.18 16 7 O -0.40 -10.42 8.49 5.18 0.04 -10.38 16 8 N -0.60 -10.38 2.75 -167.30 -0.46 -10.85 16 9 C 0.10 1.18 5.66 -4.04 -0.02 1.16 16 10 C -0.18 -1.92 8.92 37.16 0.33 -1.59 16 11 C 0.11 1.89 4.87 -67.67 -0.33 1.56 16 12 C 0.11 2.18 8.22 -8.51 -0.07 2.11 16 13 N -0.60 -15.52 2.08 -184.62 -0.38 -15.90 16 14 C -0.25 -7.66 9.11 -15.06 -0.14 -7.80 16 15 H 0.07 2.35 8.05 -52.49 -0.42 1.93 16 16 C -0.01 -0.48 4.96 -17.43 -0.09 -0.56 16 17 N -0.95 -32.20 13.70 55.49 0.76 -31.44 16 18 Si 1.08 30.11 23.97 -169.99 -4.07 26.03 16 19 H -0.31 -8.73 7.11 56.52 0.40 -8.32 16 20 H -0.29 -7.97 6.03 56.52 0.34 -7.63 16 21 H -0.30 -7.82 6.72 56.52 0.38 -7.44 16 22 C 0.09 1.92 4.98 -8.37 -0.04 1.88 16 23 C -0.06 -1.08 9.80 -40.43 -0.40 -1.47 16 24 C -0.12 -1.70 5.78 -106.45 -0.62 -2.31 16 25 C -0.09 -1.11 9.55 36.01 0.34 -0.77 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 7.81 -51.93 -0.41 0.12 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.68 7.25 -51.93 -0.38 0.30 16 31 H 0.08 0.93 4.67 -23.68 -0.11 0.82 16 32 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.85 5.77 -37.08 -0.21 0.63 16 36 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.25 8.52 8.73 -40.82 -0.36 8.17 16 40 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.06 1.44 3.49 -51.93 -0.18 1.26 16 42 H 0.15 3.02 8.06 -52.48 -0.42 2.59 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 45 H 0.06 0.62 6.86 -51.93 -0.36 0.27 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -37.19 350.35 -8.57 -45.76 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.79 Total: -3.48 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.33 Total: -5.98 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.08 Total: -58.19 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.04 Total: -10.38 kcal Atomic # 14 Polarization: 30.11 SS G_CDS: -4.07 Total: 26.03 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.62 Total: 0.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.19 -8.57 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957360224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.815 kcal (2) G-P(sol) polarization free energy of solvation -37.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds