Wall clock time and date at job start Tue Mar 31 2020 13:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50699 * 109.46971 * 2 1 4 4 S 1.70615 * 124.52302 * 270.02544 * 3 2 1 5 5 C 1.75832 * 91.56398 * 179.97438 * 4 3 2 6 6 C 1.46585 * 125.45886 * 179.97438 * 5 4 3 7 7 O 1.21707 * 119.99680 * 185.40507 * 6 5 4 8 8 N 1.34767 * 119.99936 * 5.40453 * 6 5 4 9 9 C 1.46504 * 120.00216 * 4.49608 * 8 6 5 10 10 C 1.53000 * 109.46805 * 273.83365 * 9 8 6 11 11 C 1.46504 * 120.00202 * 184.49021 * 8 6 5 12 12 C 1.53493 * 114.20554 * 300.00599 * 11 8 6 13 13 N 1.47068 * 87.98819 * 87.51718 * 12 11 8 14 14 C 1.36942 * 136.05545 * 207.08551 * 13 12 11 15 15 H 1.07995 * 120.00423 * 355.18010 * 14 13 12 16 16 C 1.38807 * 119.99722 * 175.17997 * 14 13 12 17 17 N 1.31617 * 120.00065 * 184.64090 * 16 14 13 18 18 Si 1.86803 * 119.99888 * 4.63985 * 16 14 13 19 19 H 1.48508 * 109.46924 * 174.41226 * 18 16 14 20 20 H 1.48501 * 109.47087 * 294.40888 * 18 16 14 21 21 H 1.48493 * 109.47121 * 54.41359 * 18 16 14 22 22 C 1.47066 * 87.88366 * 27.34054 * 13 12 11 23 23 C 1.36644 * 109.08372 * 0.26555 * 5 4 3 24 24 C 1.33815 * 124.52320 * 90.00338 * 3 2 1 25 25 C 1.50701 * 122.44880 * 0.04075 * 24 3 2 26 26 H 1.09000 * 109.47186 * 59.99728 * 1 2 3 27 27 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99977 * 1 2 3 29 29 H 1.08994 * 109.46833 * 240.00411 * 2 1 3 30 30 H 1.09000 * 109.47186 * 120.00272 * 2 1 3 31 31 H 1.08996 * 109.47079 * 33.83430 * 9 8 6 32 32 H 1.08998 * 109.47098 * 153.83316 * 9 8 6 33 33 H 1.09000 * 109.46853 * 179.97438 * 10 9 8 34 34 H 1.09004 * 109.47058 * 299.99918 * 10 9 8 35 35 H 1.08998 * 109.47333 * 60.00095 * 10 9 8 36 36 H 1.08993 * 113.28372 * 166.93622 * 11 8 6 37 37 H 1.09001 * 113.47146 * 332.73620 * 12 11 8 38 38 H 1.09003 * 113.47171 * 202.29802 * 12 11 8 39 39 H 0.96998 * 119.99971 * 4.99972 * 17 16 14 40 40 H 1.09003 * 113.46420 * 87.44264 * 22 13 12 41 41 H 1.08996 * 113.46614 * 217.87667 * 22 13 12 42 42 H 1.08006 * 123.35510 * 179.73540 * 23 5 4 43 43 H 1.09001 * 109.47205 * 89.99770 * 25 24 3 44 44 H 1.08998 * 109.47352 * 210.00474 * 25 24 3 45 45 H 1.09005 * 109.47348 * 330.00190 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8455 3.7238 -0.4491 6 6 3.2997 5.0089 -0.9883 7 8 3.7104 5.8733 -0.2363 8 7 3.2627 5.2333 -2.3166 9 6 2.6777 4.2326 -3.2126 10 6 3.7430 3.2015 -3.5904 11 6 3.8073 6.4779 -2.8648 12 6 3.1287 7.7488 -2.3354 13 7 4.0835 7.7304 -1.2169 14 6 4.0941 8.1761 0.0779 15 1 3.2633 8.7523 0.4575 16 6 5.1727 7.8873 0.9024 17 7 5.1431 8.2360 2.1712 18 14 6.6664 7.0036 0.2113 19 1 7.7256 6.9353 1.2499 20 1 6.2831 5.6280 -0.1961 21 1 7.1778 7.7451 -0.9693 22 6 5.0242 7.0284 -2.1030 23 6 2.7423 3.4127 0.8775 24 6 2.2852 2.1358 1.1025 25 6 2.0897 1.5797 2.4894 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8508 3.7326 -2.7083 32 1 2.3104 4.7226 -4.1142 33 1 3.3077 2.4567 -4.2566 34 1 4.5700 3.7015 -4.0947 35 1 4.1103 2.7114 -2.6887 36 1 3.9297 6.4546 -3.9476 37 1 2.0951 7.5925 -2.0264 38 1 3.2469 8.6102 -2.9929 39 1 4.3401 8.6292 2.5475 40 1 5.6422 7.6998 -2.6992 41 1 5.6056 6.2583 -1.5961 42 1 2.9917 4.1024 1.6703 43 1 3.0116 1.1036 2.8233 44 1 1.8306 2.3889 3.1722 45 1 1.2853 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957360224.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:07 Heat of formation + Delta-G solvation = 81.147151 kcal Electronic energy + Delta-G solvation = -26670.783937 eV Core-core repulsion = 23204.253930 eV Total energy + Delta-G solvation = -3466.530007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67133 -39.69102 -38.33742 -36.71628 -34.60029 -34.28674 -31.38332 -31.23384 -29.42523 -28.30486 -26.95514 -26.27989 -24.28942 -24.05222 -23.16586 -21.78029 -20.18385 -19.35825 -19.23188 -18.64162 -17.60643 -17.00878 -16.62841 -16.12052 -15.98577 -15.75013 -15.45724 -15.22805 -15.12048 -14.90435 -14.62655 -14.29320 -13.98585 -13.66808 -13.52572 -13.29169 -13.14972 -13.05453 -13.00171 -12.79349 -12.65505 -12.52852 -12.37596 -12.18806 -12.10458 -11.96262 -11.92430 -11.29988 -11.12773 -10.99993 -10.95889 -10.30080 -9.60445 -9.36257 -9.01381 -8.69928 -8.41944 -5.14684 -0.38158 0.59336 1.06968 1.29651 1.43451 1.50420 1.64820 2.03853 2.43398 2.67221 3.17765 3.44493 3.57560 3.71561 3.80999 3.96646 4.14821 4.24024 4.31948 4.35737 4.43089 4.45461 4.49802 4.51256 4.53946 4.67026 4.71712 4.75549 4.79686 4.85869 4.88226 4.93650 4.96267 5.02657 5.06739 5.08779 5.16698 5.33514 5.37340 5.39566 5.45880 5.60466 5.88594 6.13758 6.55444 6.89128 7.55503 7.63377 8.50696 9.14844 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.005378 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.633529 B = 5204.917034 C = 6281.819072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.235 4.235 4 S 0.309 5.691 5 C -0.296 4.296 6 C 0.528 3.472 7 O -0.473 6.473 8 N -0.599 5.599 9 C 0.089 3.911 10 C -0.181 4.181 11 C 0.135 3.865 12 C 0.103 3.897 13 N -0.632 5.632 14 C -0.215 4.215 15 H 0.027 0.973 16 C -0.079 4.079 17 N -0.996 5.996 18 Si 1.128 2.872 19 H -0.324 1.324 20 H -0.292 1.292 21 H -0.268 1.268 22 C 0.075 3.925 23 C -0.081 4.081 24 C -0.141 4.141 25 C -0.091 4.091 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.160 0.840 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.234 0.766 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -22.009 -17.058 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.353 4.353 4 S 0.580 5.420 5 C -0.416 4.416 6 C 0.314 3.686 7 O -0.345 6.345 8 N -0.334 5.334 9 C -0.034 4.034 10 C -0.240 4.240 11 C 0.030 3.970 12 C -0.024 4.024 13 N -0.359 5.359 14 C -0.343 4.343 15 H 0.045 0.955 16 C -0.268 4.268 17 N -0.646 5.646 18 Si 0.961 3.039 19 H -0.254 1.254 20 H -0.221 1.221 21 H -0.194 1.194 22 C -0.051 4.051 23 C -0.115 4.115 24 C -0.152 4.152 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.145 0.855 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.177 0.823 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.866 -22.293 -17.613 29.480 hybrid contribution -1.497 1.760 2.538 3.433 sum -9.364 -20.533 -15.075 27.139 Atomic orbital electron populations 1.21785 0.93463 1.03038 1.02073 1.20222 0.96717 0.87707 1.04388 1.25268 1.06135 1.03762 1.00156 1.82869 1.57800 0.98086 1.03211 1.24887 1.17187 1.00675 0.98871 1.18022 0.80541 0.86127 0.83893 1.91512 1.42658 1.42158 1.58158 1.47528 1.61416 1.19252 1.05217 1.22141 0.96059 0.90067 0.95151 1.22501 0.99945 0.99423 1.02145 1.22575 0.93130 0.83022 0.98266 1.23052 0.93767 0.96668 0.88921 1.45675 1.15376 1.68598 1.06292 1.19482 1.03656 1.25113 0.86076 0.95480 1.26398 1.04846 1.01513 0.94032 1.71027 1.29868 1.50142 1.13607 0.82974 0.72427 0.75397 0.73137 1.25372 1.22110 1.19391 1.23344 0.95014 0.94932 0.91786 1.20587 0.98680 0.96925 0.95303 1.18655 1.05455 0.92931 0.98198 1.20515 1.02733 1.00850 0.90845 0.92443 0.89984 0.93326 0.89006 0.89492 0.90417 0.85472 0.87374 0.91004 0.93452 0.82268 0.95649 0.90994 0.95742 0.91427 0.94597 0.87713 0.91032 0.92862 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.90 71.99 0.71 -1.13 16 2 C -0.05 -0.75 5.72 29.85 0.17 -0.58 16 3 C -0.23 -5.37 5.53 24.68 0.14 -5.23 16 4 S 0.31 6.86 15.07 -56.49 -0.85 6.01 16 5 C -0.30 -10.81 6.16 24.08 0.15 -10.66 16 6 C 0.53 22.61 7.13 86.42 0.62 23.23 16 7 O -0.47 -26.34 8.49 -4.37 -0.04 -26.38 16 8 N -0.60 -19.15 2.75 -801.43 -2.20 -21.35 16 9 C 0.09 1.69 5.66 86.38 0.49 2.18 16 10 C -0.18 -2.78 8.92 71.98 0.64 -2.14 16 11 C 0.13 4.26 4.87 45.55 0.22 4.48 16 12 C 0.10 4.04 8.22 83.18 0.68 4.72 16 13 N -0.63 -33.21 2.08 -738.01 -1.53 -34.74 16 14 C -0.22 -14.03 9.11 84.03 0.77 -13.26 16 15 H 0.03 1.95 8.05 -2.91 -0.02 1.92 16 16 C -0.08 -5.35 4.96 84.86 0.42 -4.93 16 17 N -1.00 -72.69 13.70 21.65 0.30 -72.40 16 18 Si 1.13 64.16 23.97 68.60 1.64 65.80 16 19 H -0.32 -18.93 7.11 99.48 0.71 -18.22 16 20 H -0.29 -16.26 6.03 99.48 0.60 -15.66 16 21 H -0.27 -13.49 6.72 99.48 0.67 -12.82 16 22 C 0.07 3.20 4.98 83.27 0.41 3.61 16 23 C -0.08 -3.14 9.80 21.72 0.21 -2.93 16 24 C -0.14 -4.14 5.78 -21.05 -0.12 -4.26 16 25 C -0.09 -2.18 9.55 71.24 0.68 -1.50 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.72 7.81 -2.38 -0.02 0.71 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.18 7.25 -2.39 -0.02 1.16 16 31 H 0.08 1.49 4.67 -20.36 -0.10 1.40 16 32 H 0.13 1.51 8.04 -2.39 -0.02 1.49 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 0.96 5.77 -11.83 -0.07 0.89 16 36 H 0.16 3.06 8.09 -2.39 -0.02 3.04 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.23 17.25 8.73 -92.71 -0.81 16.44 16 40 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 41 H 0.04 1.73 3.49 -2.39 -0.01 1.73 16 42 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 45 H 0.09 1.61 6.86 -2.38 -0.02 1.60 16 Total: -1.00 -93.81 350.35 4.17 -89.64 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 0.66 Total: 1.83 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 6.19 Total: -8.42 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -3.44 Total: -128.49 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.04 Total: -26.38 kcal Atomic # 14 Polarization: 64.16 SS G_CDS: 1.64 Total: 65.80 kcal Atomic # 16 Polarization: 6.86 SS G_CDS: -0.85 Total: 6.01 kcal Total: -93.81 4.17 -89.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957360224.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.787 kcal (2) G-P(sol) polarization free energy of solvation -93.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds