Wall clock time and date at job start Tue Mar 31 2020 13:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47032 * 2 1 4 4 C 1.37476 * 122.44991 * 264.97472 * 3 2 1 5 5 C 1.36648 * 113.29443 * 180.02562 * 4 3 2 6 6 C 1.46576 * 125.45802 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00307 * 6.84893 * 6 5 4 8 8 N 1.34779 * 120.00039 * 186.84794 * 6 5 4 9 9 C 1.46494 * 120.00148 * 5.59831 * 8 6 5 10 10 C 1.53001 * 109.47217 * 271.79934 * 9 8 6 11 11 C 1.46507 * 120.00181 * 185.59776 * 8 6 5 12 12 C 1.53496 * 114.20443 * 300.00451 * 11 8 6 13 13 N 1.47059 * 87.98860 * 87.51745 * 12 11 8 14 14 C 1.36938 * 136.05764 * 207.08686 * 13 12 11 15 15 H 1.08000 * 119.99845 * 8.85376 * 14 13 12 16 16 C 1.38809 * 120.00174 * 188.85576 * 14 13 12 17 17 N 1.31624 * 120.00493 * 194.89248 * 16 14 13 18 18 Si 1.86808 * 120.00025 * 14.89188 * 16 14 13 19 19 H 1.48497 * 109.47206 * 270.00377 * 18 16 14 20 20 H 1.48504 * 109.46656 * 30.00359 * 18 16 14 21 21 H 1.48499 * 109.47112 * 150.00045 * 18 16 14 22 22 C 1.47069 * 87.88550 * 27.33993 * 13 12 11 23 23 S 1.75838 * 109.08297 * 0.22968 * 5 4 3 24 24 C 1.33813 * 122.44678 * 85.00795 * 3 2 1 25 25 C 1.50701 * 124.52346 * 359.97083 * 24 3 2 26 26 H 1.09005 * 109.47282 * 59.99578 * 1 2 3 27 27 H 1.08999 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46876 * 299.99479 * 1 2 3 29 29 H 1.09005 * 109.46876 * 240.00521 * 2 1 3 30 30 H 1.08996 * 109.47542 * 120.00970 * 2 1 3 31 31 H 1.07997 * 123.35148 * 0.04907 * 4 3 2 32 32 H 1.09006 * 109.47418 * 31.79796 * 9 8 6 33 33 H 1.08997 * 109.47123 * 151.79870 * 9 8 6 34 34 H 1.08998 * 109.46985 * 299.99384 * 10 9 8 35 35 H 1.08997 * 109.47126 * 59.99938 * 10 9 8 36 36 H 1.09001 * 109.47262 * 179.97438 * 10 9 8 37 37 H 1.08994 * 113.28592 * 166.93101 * 11 8 6 38 38 H 1.08999 * 113.46510 * 332.73378 * 12 11 8 39 39 H 1.08999 * 113.46762 * 202.30128 * 12 11 8 40 40 H 0.97000 * 119.99703 * 354.92815 * 17 16 14 41 41 H 1.08994 * 113.46415 * 87.44201 * 22 13 12 42 42 H 1.09002 * 113.46880 * 217.87571 * 22 13 12 43 43 H 1.08995 * 109.47188 * 90.00288 * 25 24 3 44 44 H 1.09000 * 109.47029 * 210.00482 * 25 24 3 45 45 H 1.09002 * 109.46849 * 330.00274 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0824 -1.1556 5 6 2.8062 3.3605 -0.9390 6 6 3.2362 4.3004 -1.9784 7 8 3.1089 4.0087 -3.1530 8 7 3.7725 5.4877 -1.6332 9 6 4.0391 5.7893 -0.2246 10 6 2.7935 6.4129 0.4081 11 6 4.0888 6.4768 -2.6666 12 6 5.1023 5.9920 -3.7125 13 7 3.9729 5.4392 -4.4750 14 6 3.7918 4.4153 -5.3660 15 1 4.5867 3.7056 -5.5419 16 6 2.5866 4.2894 -6.0431 17 7 2.2956 3.1670 -6.6660 18 14 1.3774 5.7131 -6.0703 19 1 0.4539 5.6004 -4.9129 20 1 2.1211 6.9957 -5.9872 21 1 0.5961 5.6748 -7.3326 22 6 3.1248 6.4741 -3.8645 23 16 2.7710 3.6945 0.7870 24 6 2.1790 2.1304 1.1250 25 6 1.8681 1.6150 2.5065 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 2.3071 1.6365 -2.1370 32 1 4.2924 4.8693 0.3023 33 1 4.8716 6.4893 -0.1542 34 1 2.5403 7.3329 -0.1187 35 1 1.9610 5.7129 0.3377 36 1 2.9917 6.6369 1.4562 37 1 4.3007 7.4674 -2.2645 38 1 5.7852 5.2309 -3.3350 39 1 5.6174 6.8035 -4.2266 40 1 2.9526 2.4550 -6.7146 41 1 3.1185 7.4126 -4.4186 42 1 2.1229 6.1237 -3.6165 43 1 2.7582 1.1492 2.9294 44 1 1.5552 2.4438 3.1416 45 1 1.0659 0.8793 2.4479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957362172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:58 Heat of formation + Delta-G solvation = 100.356141 kcal Electronic energy + Delta-G solvation = -26545.504263 eV Core-core repulsion = 23079.807220 eV Total energy + Delta-G solvation = -3465.697043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.09902 -38.61726 -36.73867 -35.32409 -32.64847 -32.06217 -31.39840 -30.06678 -27.77707 -26.77833 -25.14386 -23.93229 -23.77278 -23.05347 -21.92502 -20.02906 -18.59183 -18.04272 -17.37167 -17.20532 -16.22748 -15.46872 -15.01646 -14.76980 -14.49937 -14.26908 -14.08049 -13.85469 -13.53790 -13.51784 -13.11895 -13.05891 -12.96372 -12.70365 -12.44754 -12.23795 -12.00350 -11.96351 -11.61031 -11.53715 -11.26844 -11.05500 -10.96122 -10.93456 -10.71684 -10.38013 -10.23072 -9.98078 -9.48178 -9.09671 -8.80757 -8.31811 -8.14302 -8.06027 -7.92213 -6.62370 -5.93123 -2.76879 0.84788 1.75682 2.15893 2.67966 3.33456 3.59619 3.65372 3.79079 3.93583 4.75302 4.85290 4.89585 4.89625 5.00037 5.05805 5.07812 5.17177 5.26296 5.31918 5.35356 5.43931 5.46892 5.63201 5.65349 5.69337 5.71286 5.76814 5.82285 5.86500 5.90417 6.02790 6.10334 6.17865 6.24026 6.28775 6.32886 6.43158 6.53857 6.56407 6.70632 6.72583 7.29180 7.44344 7.95266 8.56086 9.07398 9.32783 9.90614 10.73782 11.58267 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.005457 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.412805 B = 5129.628930 C = 6477.704054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.115 4.115 4 C -0.058 4.058 5 C -0.244 4.244 6 C 0.537 3.463 7 O -0.395 6.395 8 N -0.601 5.601 9 C 0.097 3.903 10 C -0.182 4.182 11 C 0.105 3.895 12 C 0.102 3.898 13 N -0.593 5.593 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.024 4.024 17 N -0.948 5.948 18 Si 1.062 2.938 19 H -0.301 1.301 20 H -0.287 1.287 21 H -0.303 1.303 22 C 0.097 3.903 23 S 0.202 5.798 24 C -0.245 4.245 25 C -0.079 4.079 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.255 0.745 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 2.278 22.354 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.127 4.127 4 C -0.090 4.090 5 C -0.364 4.364 6 C 0.320 3.680 7 O -0.262 6.262 8 N -0.338 5.338 9 C -0.028 4.028 10 C -0.241 4.241 11 C 0.000 4.000 12 C -0.026 4.026 13 N -0.320 5.320 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.220 4.220 17 N -0.593 5.593 18 Si 0.896 3.104 19 H -0.229 1.229 20 H -0.214 1.214 21 H -0.231 1.231 22 C -0.030 4.030 23 S 0.471 5.529 24 C -0.363 4.363 25 C -0.138 4.138 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.221 3.555 21.877 22.165 hybrid contribution 1.163 -1.695 -0.168 2.062 sum 0.941 1.860 21.709 21.809 Atomic orbital electron populations 1.21741 0.95007 1.01372 1.02255 1.20225 0.95879 0.91802 1.02448 1.18581 1.04575 0.98042 0.91518 1.20644 0.96292 0.92295 0.99731 1.25024 1.14829 1.00523 0.96071 1.17539 0.80618 0.81182 0.88614 1.91635 1.47620 1.72997 1.13932 1.47348 1.65061 1.15940 1.05402 1.21727 0.98274 1.00592 0.82223 1.22484 0.98887 1.01933 1.00811 1.22705 0.99320 0.89972 0.87965 1.22782 0.92622 0.95948 0.91257 1.45773 1.03038 1.31181 1.51999 1.19690 1.02062 1.00767 1.14443 0.91217 1.25380 0.97054 1.01972 0.97631 1.70869 1.34803 1.04347 1.49256 0.83762 0.75787 0.75778 0.75037 1.22937 1.21369 1.23077 1.22939 0.96352 0.93191 0.90539 1.83559 1.60402 1.08371 1.00529 1.24600 1.09041 1.02984 0.99635 1.20294 1.01926 1.00972 0.90565 0.92252 0.92606 0.92865 0.90993 0.91452 0.83195 0.90317 0.89629 0.91627 0.91326 0.91302 0.89031 0.94128 0.94240 0.93496 0.93372 0.93004 0.91176 0.91717 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.83 37.16 0.37 -1.25 16 2 C -0.06 -0.77 5.54 -27.88 -0.15 -0.92 16 3 C -0.11 -1.64 5.04 -106.45 -0.54 -2.18 16 4 C -0.06 -1.02 9.79 -40.43 -0.40 -1.41 16 5 C -0.24 -4.30 6.20 -36.80 -0.23 -4.53 16 6 C 0.54 11.13 7.13 -12.90 -0.09 11.04 16 7 O -0.40 -10.41 10.29 5.19 0.05 -10.36 16 8 N -0.60 -10.24 2.75 -167.30 -0.46 -10.70 16 9 C 0.10 1.16 5.64 -4.04 -0.02 1.14 16 10 C -0.18 -1.87 8.97 37.16 0.33 -1.54 16 11 C 0.11 1.86 4.87 -67.67 -0.33 1.53 16 12 C 0.10 2.09 8.21 -8.51 -0.07 2.02 16 13 N -0.59 -15.29 1.94 -184.63 -0.36 -15.65 16 14 C -0.24 -7.40 8.55 -15.06 -0.13 -7.53 16 15 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 16 C -0.02 -0.74 5.32 -17.43 -0.09 -0.84 16 17 N -0.95 -31.93 13.70 55.49 0.76 -31.17 16 18 Si 1.06 29.07 25.52 -169.99 -4.34 24.73 16 19 H -0.30 -8.17 6.97 56.52 0.39 -7.78 16 20 H -0.29 -7.18 5.65 56.52 0.32 -6.86 16 21 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 22 C 0.10 2.15 4.56 -8.37 -0.04 2.11 16 23 S 0.20 2.51 15.14 -107.50 -1.63 0.89 16 24 C -0.24 -3.06 6.28 -35.86 -0.23 -3.29 16 25 C -0.08 -0.72 9.71 36.01 0.35 -0.37 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.55 7.24 -51.93 -0.38 0.17 16 29 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.07 0.68 7.46 -51.93 -0.39 0.30 16 31 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 32 H 0.08 0.93 4.65 -23.87 -0.11 0.82 16 33 H 0.09 0.82 8.06 -51.93 -0.42 0.41 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.82 5.85 -38.18 -0.22 0.60 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.25 8.57 8.73 -40.82 -0.36 8.21 16 41 H 0.05 1.03 6.99 -51.93 -0.36 0.67 16 42 H 0.05 1.27 5.67 -51.93 -0.29 0.98 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.62 6.39 -51.93 -0.33 0.28 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -36.93 353.20 -8.73 -45.66 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.82 Total: -2.72 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.27 Total: -6.02 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.06 Total: -57.51 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.05 Total: -10.36 kcal Atomic # 14 Polarization: 29.07 SS G_CDS: -4.34 Total: 24.73 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.63 Total: 0.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.93 -8.73 -45.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957362172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.015 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds