Wall clock time and date at job start Tue Mar 31 2020 13:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47032 * 2 1 4 4 C 1.37476 * 122.44991 * 264.97472 * 3 2 1 5 5 C 1.36648 * 113.29443 * 180.02562 * 4 3 2 6 6 C 1.46576 * 125.45802 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00307 * 6.84893 * 6 5 4 8 8 N 1.34779 * 120.00039 * 186.84794 * 6 5 4 9 9 C 1.46494 * 120.00148 * 5.59831 * 8 6 5 10 10 C 1.53001 * 109.47217 * 271.79934 * 9 8 6 11 11 C 1.46507 * 120.00181 * 185.59776 * 8 6 5 12 12 C 1.53496 * 114.20443 * 300.00451 * 11 8 6 13 13 N 1.47059 * 87.98860 * 87.51745 * 12 11 8 14 14 C 1.36938 * 136.05764 * 207.08686 * 13 12 11 15 15 H 1.08000 * 119.99845 * 8.85376 * 14 13 12 16 16 C 1.38809 * 120.00174 * 188.85576 * 14 13 12 17 17 N 1.31624 * 120.00493 * 194.89248 * 16 14 13 18 18 Si 1.86808 * 120.00025 * 14.89188 * 16 14 13 19 19 H 1.48497 * 109.47206 * 270.00377 * 18 16 14 20 20 H 1.48504 * 109.46656 * 30.00359 * 18 16 14 21 21 H 1.48499 * 109.47112 * 150.00045 * 18 16 14 22 22 C 1.47069 * 87.88550 * 27.33993 * 13 12 11 23 23 S 1.75838 * 109.08297 * 0.22968 * 5 4 3 24 24 C 1.33813 * 122.44678 * 85.00795 * 3 2 1 25 25 C 1.50701 * 124.52346 * 359.97083 * 24 3 2 26 26 H 1.09005 * 109.47282 * 59.99578 * 1 2 3 27 27 H 1.08999 * 109.46924 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46876 * 299.99479 * 1 2 3 29 29 H 1.09005 * 109.46876 * 240.00521 * 2 1 3 30 30 H 1.08996 * 109.47542 * 120.00970 * 2 1 3 31 31 H 1.07997 * 123.35148 * 0.04907 * 4 3 2 32 32 H 1.09006 * 109.47418 * 31.79796 * 9 8 6 33 33 H 1.08997 * 109.47123 * 151.79870 * 9 8 6 34 34 H 1.08998 * 109.46985 * 299.99384 * 10 9 8 35 35 H 1.08997 * 109.47126 * 59.99938 * 10 9 8 36 36 H 1.09001 * 109.47262 * 179.97438 * 10 9 8 37 37 H 1.08994 * 113.28592 * 166.93101 * 11 8 6 38 38 H 1.08999 * 113.46510 * 332.73378 * 12 11 8 39 39 H 1.08999 * 113.46762 * 202.30128 * 12 11 8 40 40 H 0.97000 * 119.99703 * 354.92815 * 17 16 14 41 41 H 1.08994 * 113.46415 * 87.44201 * 22 13 12 42 42 H 1.09002 * 113.46880 * 217.87571 * 22 13 12 43 43 H 1.08995 * 109.47188 * 90.00288 * 25 24 3 44 44 H 1.09000 * 109.47029 * 210.00482 * 25 24 3 45 45 H 1.09002 * 109.46849 * 330.00274 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0824 -1.1556 5 6 2.8062 3.3605 -0.9390 6 6 3.2362 4.3004 -1.9784 7 8 3.1089 4.0087 -3.1530 8 7 3.7725 5.4877 -1.6332 9 6 4.0391 5.7893 -0.2246 10 6 2.7935 6.4129 0.4081 11 6 4.0888 6.4768 -2.6666 12 6 5.1023 5.9920 -3.7125 13 7 3.9729 5.4392 -4.4750 14 6 3.7918 4.4153 -5.3660 15 1 4.5867 3.7056 -5.5419 16 6 2.5866 4.2894 -6.0431 17 7 2.2956 3.1670 -6.6660 18 14 1.3774 5.7131 -6.0703 19 1 0.4539 5.6004 -4.9129 20 1 2.1211 6.9957 -5.9872 21 1 0.5961 5.6748 -7.3326 22 6 3.1248 6.4741 -3.8645 23 16 2.7710 3.6945 0.7870 24 6 2.1790 2.1304 1.1250 25 6 1.8681 1.6150 2.5065 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 2.3071 1.6365 -2.1370 32 1 4.2924 4.8693 0.3023 33 1 4.8716 6.4893 -0.1542 34 1 2.5403 7.3329 -0.1187 35 1 1.9610 5.7129 0.3377 36 1 2.9917 6.6369 1.4562 37 1 4.3007 7.4674 -2.2645 38 1 5.7852 5.2309 -3.3350 39 1 5.6174 6.8035 -4.2266 40 1 2.9526 2.4550 -6.7146 41 1 3.1185 7.4126 -4.4186 42 1 2.1229 6.1237 -3.6165 43 1 2.7582 1.1492 2.9294 44 1 1.5552 2.4438 3.1416 45 1 1.0659 0.8793 2.4479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957362172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:57 Heat of formation + Delta-G solvation = 74.764058 kcal Electronic energy + Delta-G solvation = -26546.614019 eV Core-core repulsion = 23079.807220 eV Total energy + Delta-G solvation = -3466.806799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64509 -39.78749 -38.36062 -36.70702 -34.34073 -33.72279 -32.33701 -31.32811 -29.55423 -28.07224 -26.87037 -25.34495 -24.76509 -24.20531 -23.47834 -21.64380 -20.02425 -19.34683 -19.25816 -18.66088 -17.51115 -16.93989 -16.40598 -16.22759 -15.99957 -15.68637 -15.50413 -15.22629 -15.15942 -14.84353 -14.76040 -14.31608 -13.88620 -13.67600 -13.53446 -13.40890 -13.18502 -13.11754 -12.90013 -12.78175 -12.68452 -12.55653 -12.38389 -12.27986 -11.94400 -11.92422 -11.87409 -11.39198 -11.24998 -11.15739 -10.85540 -10.27759 -9.59641 -9.34536 -9.04211 -8.74386 -8.38065 -5.12492 -0.38284 0.59344 1.05607 1.33298 1.43647 1.49210 1.62591 2.03918 2.41844 2.66841 3.15490 3.41581 3.57397 3.72099 3.89483 3.95946 4.09367 4.18439 4.32204 4.36891 4.39816 4.45678 4.47165 4.53704 4.65939 4.68579 4.71397 4.73608 4.77265 4.81575 4.88871 4.93858 4.96291 4.98893 5.10717 5.12611 5.15764 5.28940 5.39057 5.40323 5.45418 5.60176 5.89030 6.13533 6.55554 6.89235 7.57056 7.62203 8.52089 9.13935 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.005457 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.412805 B = 5129.628930 C = 6477.704054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.138 4.138 4 C -0.078 4.078 5 C -0.298 4.298 6 C 0.530 3.470 7 O -0.478 6.478 8 N -0.598 5.598 9 C 0.088 3.912 10 C -0.180 4.180 11 C 0.134 3.866 12 C 0.099 3.901 13 N -0.625 5.625 14 C -0.204 4.204 15 H 0.020 0.980 16 C -0.095 4.095 17 N -0.992 5.992 18 Si 1.107 2.893 19 H -0.306 1.306 20 H -0.244 1.244 21 H -0.310 1.310 22 C 0.088 3.912 23 S 0.309 5.691 24 C -0.235 4.235 25 C -0.083 4.083 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.107 0.893 37 H 0.160 0.840 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.233 0.767 41 H 0.073 0.927 42 H 0.024 0.976 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 5.872 28.042 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 C -0.149 4.149 4 C -0.112 4.112 5 C -0.418 4.418 6 C 0.316 3.684 7 O -0.350 6.350 8 N -0.333 5.333 9 C -0.035 4.035 10 C -0.239 4.239 11 C 0.029 3.971 12 C -0.027 4.027 13 N -0.353 5.353 14 C -0.333 4.333 15 H 0.038 0.962 16 C -0.283 4.283 17 N -0.642 5.642 18 Si 0.936 3.064 19 H -0.235 1.235 20 H -0.168 1.168 21 H -0.239 1.239 22 C -0.038 4.038 23 S 0.580 5.420 24 C -0.354 4.354 25 C -0.141 4.141 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.177 0.823 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.380 7.233 27.668 28.601 hybrid contribution 1.148 -2.835 -1.650 3.475 sum 1.528 4.399 26.019 26.432 Atomic orbital electron populations 1.21718 0.94358 1.02373 1.01519 1.20262 0.96431 0.90704 1.02844 1.18610 1.06140 0.99343 0.90841 1.20556 0.98054 0.93437 0.99174 1.24875 1.17001 1.00108 0.99810 1.18030 0.79635 0.82325 0.88366 1.91558 1.51224 1.74999 1.17268 1.47530 1.63429 1.14561 1.07807 1.22152 1.00708 1.01759 0.78857 1.22478 0.96932 1.01360 1.03116 1.22613 0.95052 0.92498 0.86957 1.23080 0.92007 0.96044 0.91595 1.45702 1.06850 1.31405 1.51301 1.19325 1.00105 1.00724 1.13145 0.96187 1.26623 0.99554 1.03438 0.98691 1.70993 1.34709 1.05372 1.53164 0.83231 0.74075 0.74926 0.74136 1.23514 1.16770 1.23908 1.23190 0.95532 0.92300 0.92792 1.82879 1.57939 1.06928 0.94262 1.25249 1.06145 1.03110 1.00855 1.20505 1.03255 1.02204 0.88098 0.95110 0.90763 0.91364 0.92834 0.88741 0.88092 0.90335 0.85678 0.90988 0.93412 0.87426 0.82254 0.95737 0.90958 0.95822 0.90996 0.95773 0.89198 0.89450 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.83 71.98 0.71 -2.43 16 2 C -0.06 -1.53 5.54 29.85 0.17 -1.36 16 3 C -0.14 -4.00 5.04 -21.05 -0.11 -4.11 16 4 C -0.08 -3.03 9.79 21.72 0.21 -2.82 16 5 C -0.30 -10.83 6.20 24.07 0.15 -10.68 16 6 C 0.53 22.74 7.13 86.42 0.62 23.36 16 7 O -0.48 -27.13 10.29 -4.34 -0.04 -27.18 16 8 N -0.60 -19.03 2.75 -801.44 -2.20 -21.24 16 9 C 0.09 1.67 5.64 86.38 0.49 2.15 16 10 C -0.18 -2.69 8.97 71.98 0.65 -2.05 16 11 C 0.13 4.21 4.87 45.55 0.22 4.43 16 12 C 0.10 3.91 8.21 83.18 0.68 4.59 16 13 N -0.63 -32.84 1.94 -738.05 -1.43 -34.28 16 14 C -0.20 -13.33 8.55 84.03 0.72 -12.61 16 15 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 16 C -0.09 -6.39 5.32 84.86 0.45 -5.93 16 17 N -0.99 -72.60 13.70 21.65 0.30 -72.30 16 18 Si 1.11 61.41 25.52 68.60 1.75 63.16 16 19 H -0.31 -16.99 6.97 99.48 0.69 -16.30 16 20 H -0.24 -11.54 5.65 99.48 0.56 -10.98 16 21 H -0.31 -17.33 7.11 99.48 0.71 -16.62 16 22 C 0.09 3.75 4.56 83.26 0.38 4.13 16 23 S 0.31 6.73 15.14 -56.49 -0.85 5.88 16 24 C -0.23 -5.25 6.28 24.68 0.15 -5.09 16 25 C -0.08 -1.09 9.71 71.24 0.69 -0.40 16 26 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.28 7.24 -2.38 -0.02 1.26 16 29 H 0.05 1.45 8.10 -2.38 -0.02 1.43 16 30 H 0.09 1.74 7.46 -2.39 -0.02 1.72 16 31 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.08 1.50 4.65 -20.22 -0.09 1.40 16 33 H 0.13 1.50 8.06 -2.39 -0.02 1.48 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.94 5.85 -11.13 -0.07 0.87 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.16 3.05 8.10 -2.39 -0.02 3.03 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.23 17.33 8.73 -92.71 -0.81 16.52 16 41 H 0.07 2.76 6.99 -2.39 -0.02 2.74 16 42 H 0.02 1.18 5.67 -2.39 -0.01 1.17 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 1.01 6.39 -2.39 -0.02 1.00 16 Total: -1.00 -95.07 353.20 4.34 -90.73 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.65 Total: 4.04 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 6.18 Total: -8.81 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -3.34 Total: -127.82 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.18 kcal Atomic # 14 Polarization: 61.41 SS G_CDS: 1.75 Total: 63.16 kcal Atomic # 16 Polarization: 6.73 SS G_CDS: -0.85 Total: 5.88 kcal Total: -95.07 4.34 -90.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957362172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.492 kcal (2) G-P(sol) polarization free energy of solvation -95.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds