Wall clock time and date at job start Tue Mar 31 2020 13:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47399 * 2 1 4 4 C 1.33823 * 124.51997 * 90.00087 * 3 2 1 5 5 C 1.37473 * 115.10172 * 180.02562 * 4 3 2 6 6 C 1.36641 * 113.29304 * 359.97438 * 5 4 3 7 7 C 1.46586 * 125.45463 * 179.97438 * 6 5 4 8 8 O 1.21705 * 120.00293 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00136 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.52196 * 34.92220 * 10 9 7 12 12 C 1.52764 * 109.56762 * 274.97064 * 10 9 7 13 13 N 1.46917 * 109.00934 * 185.55532 * 12 10 9 14 14 C 1.36939 * 120.63110 * 233.58442 * 13 12 10 15 15 H 1.07996 * 120.00114 * 152.50658 * 14 13 12 16 16 C 1.38816 * 119.99509 * 332.78258 * 14 13 12 17 17 N 1.31621 * 119.99558 * 159.12793 * 16 14 13 18 18 Si 1.86802 * 120.00207 * 339.12338 * 16 14 13 19 19 H 1.48497 * 109.46896 * 93.10235 * 18 16 14 20 20 H 1.48496 * 109.47102 * 213.10384 * 18 16 14 21 21 H 1.48494 * 109.46898 * 333.10536 * 18 16 14 22 22 C 1.46930 * 118.74180 * 53.30591 * 13 12 10 23 23 C 1.53187 * 108.77416 * 306.64616 * 22 13 12 24 24 C 1.53034 * 109.31600 * 54.63253 * 23 22 13 25 25 H 1.09004 * 109.45959 * 58.63895 * 24 23 22 26 26 C 1.52996 * 109.46507 * 178.61242 * 24 23 22 27 27 S 1.70617 * 124.52783 * 270.27514 * 3 2 1 28 28 H 1.08999 * 109.46706 * 299.99856 * 1 2 3 29 29 H 1.08998 * 109.47257 * 59.99196 * 1 2 3 30 30 H 1.08989 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46878 * 240.00427 * 2 1 3 32 32 H 1.08998 * 109.47257 * 120.00804 * 2 1 3 33 33 H 1.08001 * 122.44605 * 359.97438 * 4 3 2 34 34 H 1.08002 * 123.34838 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00022 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.51024 * 65.66926 * 12 10 9 37 37 H 1.09004 * 109.43020 * 305.38897 * 12 10 9 38 38 H 0.97007 * 119.99767 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.58162 * 66.43470 * 22 13 12 40 40 H 1.09002 * 109.58821 * 186.85367 * 22 13 12 41 41 H 1.08999 * 109.49365 * 174.58635 * 23 22 13 42 42 H 1.09004 * 109.49945 * 294.67859 * 23 22 13 43 43 H 1.09002 * 109.46778 * 59.99979 * 26 24 23 44 44 H 1.08999 * 109.47725 * 180.02562 * 26 24 23 45 45 H 1.09004 * 109.46896 * 300.00469 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7368 3.4145 0.8776 6 6 2.8462 3.7234 -0.4489 7 6 3.2996 5.0089 -0.9880 8 8 3.6170 5.9081 -0.2318 9 7 3.3661 5.1948 -2.3213 10 6 3.8198 6.4793 -2.8601 11 1 4.5899 6.8953 -2.2104 12 6 2.6412 7.4485 -2.9332 13 7 3.0783 8.6842 -3.5968 14 6 2.8904 9.9015 -2.9984 15 1 3.5564 10.7217 -3.2219 16 6 1.8472 10.0796 -2.1000 17 7 1.8895 11.0660 -1.2296 18 14 0.3834 8.9193 -2.1264 19 1 0.6101 7.8145 -1.1605 20 1 -0.8448 9.6633 -1.7483 21 1 0.2216 8.3578 -3.4916 22 6 3.7264 8.5888 -4.9119 23 6 4.8978 7.6065 -4.8141 24 6 4.3936 6.2706 -4.2635 25 1 3.6160 5.8780 -4.9187 26 6 5.5542 5.2760 -4.1969 27 16 2.3484 2.3348 -1.4056 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0275 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1440 1.7375 2.0965 34 1 2.9817 4.1058 1.6705 35 1 3.1135 4.4781 -2.9240 36 1 2.2953 7.6776 -1.9253 37 1 1.8323 6.9933 -3.5047 38 1 1.1607 11.1902 -0.6015 39 1 3.0078 8.2285 -5.6481 40 1 4.0962 9.5701 -5.2092 41 1 5.3274 7.4530 -5.8041 42 1 5.6578 8.0118 -4.1461 43 1 6.3321 5.6687 -3.5420 44 1 5.1952 4.3243 -3.8051 45 1 5.9622 5.1263 -5.1965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967272546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:39 Heat of formation + Delta-G solvation = 6.939215 kcal Electronic energy + Delta-G solvation = -25481.342878 eV Core-core repulsion = 22011.594973 eV Total energy + Delta-G solvation = -3469.747905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.87188 -38.42043 -37.51837 -34.52870 -33.99245 -33.23501 -31.33350 -29.94075 -28.57095 -27.54894 -25.42614 -23.88520 -23.08795 -22.52591 -21.44228 -20.76049 -19.92268 -18.95051 -17.87616 -16.85925 -16.37174 -15.68380 -15.34873 -15.06909 -14.69864 -14.48805 -14.17482 -14.14829 -13.71916 -13.47176 -13.38472 -13.31111 -13.07085 -12.54501 -12.40955 -12.32613 -12.11200 -11.96344 -11.85095 -11.82286 -11.45226 -11.37377 -11.03744 -10.85511 -10.67786 -10.52103 -10.24946 -10.10638 -9.73781 -9.71028 -9.41195 -8.93805 -8.76506 -8.72891 -8.46629 -6.94173 -5.89690 -3.25662 0.41088 1.30129 1.72085 2.31329 3.28280 3.39476 3.42960 3.51872 3.54603 4.35156 4.59797 4.65695 4.83532 4.88894 4.98607 5.07990 5.08157 5.14734 5.24706 5.27050 5.37726 5.45807 5.47996 5.59193 5.75578 5.81364 5.82888 5.84935 5.86417 5.93058 6.02488 6.07059 6.12593 6.23958 6.28341 6.32027 6.51494 6.54967 6.63270 6.66740 6.79813 6.96411 7.66969 8.00226 8.38197 8.40218 8.97845 9.77393 10.13027 11.26125 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.004095 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.562879 B = 6835.299490 C = 7901.143474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.150 4.150 5 C -0.057 4.057 6 C -0.256 4.256 7 C 0.582 3.418 8 O -0.515 6.515 9 N -0.719 5.719 10 C 0.133 3.867 11 H 0.094 0.906 12 C 0.119 3.881 13 N -0.600 5.600 14 C -0.264 4.264 15 H 0.087 0.913 16 C 0.029 3.971 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.145 3.855 23 C -0.127 4.127 24 C -0.093 4.093 25 H 0.068 0.932 26 C -0.144 4.144 27 S 0.190 5.810 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.391 0.609 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.023 0.977 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -24.431 -2.295 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.316 4.316 4 C -0.181 4.181 5 C -0.090 4.090 6 C -0.376 4.376 7 C 0.367 3.633 8 O -0.392 6.392 9 N -0.370 5.370 10 C 0.028 3.972 11 H 0.112 0.888 12 C -0.008 4.008 13 N -0.324 5.324 14 C -0.392 4.392 15 H 0.105 0.895 16 C -0.170 4.170 17 N -0.546 5.546 18 Si 0.709 3.291 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.197 1.197 22 C 0.019 3.981 23 C -0.166 4.166 24 C -0.112 4.112 25 H 0.087 0.913 26 C -0.202 4.202 27 S 0.458 5.542 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.224 0.776 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.755 -23.901 -3.196 24.178 hybrid contribution -0.988 -0.739 1.498 1.941 sum 0.767 -24.641 -1.698 24.711 Atomic orbital electron populations 1.21811 0.94076 1.02100 1.02764 1.20135 0.96358 0.89398 1.03406 1.24212 1.07657 1.02012 0.97736 1.19948 1.04545 0.94084 0.99513 1.20788 0.96611 0.96191 0.95373 1.24730 1.15544 0.99326 0.98036 1.16976 0.78183 0.85495 0.82633 1.90905 1.48213 1.42263 1.57794 1.45993 1.68267 1.16809 1.05916 1.21754 0.99030 0.82136 0.94285 0.88778 1.21620 0.93717 0.87047 0.98378 1.44270 1.70085 1.01929 1.16120 1.18887 1.09878 0.88528 1.21890 0.89534 1.25234 0.97962 0.96429 0.97391 1.69838 1.32790 1.32991 1.19010 0.86994 0.83703 0.80347 0.78101 1.21422 1.23088 1.19656 1.20993 0.92279 0.97643 0.87148 1.22074 0.99805 0.94749 1.00007 1.21315 0.97497 0.96707 0.95670 0.91319 1.21843 0.98388 0.98620 1.01330 1.82851 1.60453 1.02860 1.08054 0.92113 0.92324 0.91907 0.90685 0.89851 0.83942 0.82855 0.77584 0.90228 0.95874 0.92755 0.95887 0.91568 0.92051 0.91560 0.92606 0.93211 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.05 -0.37 6.36 -27.88 -0.18 -0.54 16 3 C -0.20 -1.90 5.53 -35.86 -0.20 -2.10 16 4 C -0.15 -1.58 9.99 -41.41 -0.41 -2.00 16 5 C -0.06 -0.76 10.01 -40.44 -0.40 -1.17 16 6 C -0.26 -3.74 6.45 -36.79 -0.24 -3.98 16 7 C 0.58 10.64 7.75 -12.89 -0.10 10.54 16 8 O -0.52 -11.80 16.50 5.18 0.09 -11.71 16 9 N -0.72 -11.78 4.36 -55.24 -0.24 -12.02 16 10 C 0.13 2.51 2.05 -68.03 -0.14 2.37 16 11 H 0.09 2.04 7.58 -51.93 -0.39 1.64 16 12 C 0.12 2.76 3.75 -3.94 -0.01 2.75 16 13 N -0.60 -14.69 2.78 -172.59 -0.48 -15.17 16 14 C -0.26 -7.64 10.03 -15.06 -0.15 -7.79 16 15 H 0.09 2.63 8.05 -52.49 -0.42 2.21 16 16 C 0.03 0.89 5.23 -17.43 -0.09 0.80 16 17 N -0.90 -28.93 13.97 55.49 0.78 -28.16 16 18 Si 0.88 23.76 24.35 -169.99 -4.14 19.62 16 19 H -0.29 -7.85 6.62 56.52 0.37 -7.47 16 20 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 21 H -0.27 -7.09 6.64 56.52 0.38 -6.71 16 22 C 0.15 2.82 6.52 -3.71 -0.02 2.80 16 23 C -0.13 -2.00 5.36 -26.62 -0.14 -2.15 16 24 C -0.09 -1.39 2.27 -90.58 -0.21 -1.60 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 C -0.14 -1.77 9.02 37.16 0.34 -1.43 16 27 S 0.19 2.01 22.10 -107.50 -2.38 -0.36 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.31 8.14 -51.94 -0.42 -0.11 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.39 5.11 7.42 -40.82 -0.30 4.81 16 36 H 0.08 2.16 4.49 -51.93 -0.23 1.92 16 37 H 0.02 0.53 7.08 -51.93 -0.37 0.16 16 38 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -34.84 368.57 -9.62 -44.45 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.20 Total: 1.89 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.60 Total: -4.10 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.05 Total: -55.34 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.14 Total: 19.62 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.38 Total: -0.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.84 -9.62 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.392 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds