Wall clock time and date at job start Tue Mar 31 2020 13:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47399 * 2 1 4 4 C 1.33823 * 124.51997 * 90.00087 * 3 2 1 5 5 C 1.37473 * 115.10172 * 180.02562 * 4 3 2 6 6 C 1.36641 * 113.29304 * 359.97438 * 5 4 3 7 7 C 1.46586 * 125.45463 * 179.97438 * 6 5 4 8 8 O 1.21705 * 120.00293 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00136 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.52196 * 34.92220 * 10 9 7 12 12 C 1.52764 * 109.56762 * 274.97064 * 10 9 7 13 13 N 1.46917 * 109.00934 * 185.55532 * 12 10 9 14 14 C 1.36939 * 120.63110 * 233.58442 * 13 12 10 15 15 H 1.07996 * 120.00114 * 152.50658 * 14 13 12 16 16 C 1.38816 * 119.99509 * 332.78258 * 14 13 12 17 17 N 1.31621 * 119.99558 * 159.12793 * 16 14 13 18 18 Si 1.86802 * 120.00207 * 339.12338 * 16 14 13 19 19 H 1.48497 * 109.46896 * 93.10235 * 18 16 14 20 20 H 1.48496 * 109.47102 * 213.10384 * 18 16 14 21 21 H 1.48494 * 109.46898 * 333.10536 * 18 16 14 22 22 C 1.46930 * 118.74180 * 53.30591 * 13 12 10 23 23 C 1.53187 * 108.77416 * 306.64616 * 22 13 12 24 24 C 1.53034 * 109.31600 * 54.63253 * 23 22 13 25 25 H 1.09004 * 109.45959 * 58.63895 * 24 23 22 26 26 C 1.52996 * 109.46507 * 178.61242 * 24 23 22 27 27 S 1.70617 * 124.52783 * 270.27514 * 3 2 1 28 28 H 1.08999 * 109.46706 * 299.99856 * 1 2 3 29 29 H 1.08998 * 109.47257 * 59.99196 * 1 2 3 30 30 H 1.08989 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46878 * 240.00427 * 2 1 3 32 32 H 1.08998 * 109.47257 * 120.00804 * 2 1 3 33 33 H 1.08001 * 122.44605 * 359.97438 * 4 3 2 34 34 H 1.08002 * 123.34838 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00022 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.51024 * 65.66926 * 12 10 9 37 37 H 1.09004 * 109.43020 * 305.38897 * 12 10 9 38 38 H 0.97007 * 119.99767 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.58162 * 66.43470 * 22 13 12 40 40 H 1.09002 * 109.58821 * 186.85367 * 22 13 12 41 41 H 1.08999 * 109.49365 * 174.58635 * 23 22 13 42 42 H 1.09004 * 109.49945 * 294.67859 * 23 22 13 43 43 H 1.09002 * 109.46778 * 59.99979 * 26 24 23 44 44 H 1.08999 * 109.47725 * 180.02562 * 26 24 23 45 45 H 1.09004 * 109.46896 * 300.00469 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7368 3.4145 0.8776 6 6 2.8462 3.7234 -0.4489 7 6 3.2996 5.0089 -0.9880 8 8 3.6170 5.9081 -0.2318 9 7 3.3661 5.1948 -2.3213 10 6 3.8198 6.4793 -2.8601 11 1 4.5899 6.8953 -2.2104 12 6 2.6412 7.4485 -2.9332 13 7 3.0783 8.6842 -3.5968 14 6 2.8904 9.9015 -2.9984 15 1 3.5564 10.7217 -3.2219 16 6 1.8472 10.0796 -2.1000 17 7 1.8895 11.0660 -1.2296 18 14 0.3834 8.9193 -2.1264 19 1 0.6101 7.8145 -1.1605 20 1 -0.8448 9.6633 -1.7483 21 1 0.2216 8.3578 -3.4916 22 6 3.7264 8.5888 -4.9119 23 6 4.8978 7.6065 -4.8141 24 6 4.3936 6.2706 -4.2635 25 1 3.6160 5.8780 -4.9187 26 6 5.5542 5.2760 -4.1969 27 16 2.3484 2.3348 -1.4056 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0275 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1440 1.7375 2.0965 34 1 2.9817 4.1058 1.6705 35 1 3.1135 4.4781 -2.9240 36 1 2.2953 7.6776 -1.9253 37 1 1.8323 6.9933 -3.5047 38 1 1.1607 11.1902 -0.6015 39 1 3.0078 8.2285 -5.6481 40 1 4.0962 9.5701 -5.2092 41 1 5.3274 7.4530 -5.8041 42 1 5.6578 8.0118 -4.1461 43 1 6.3321 5.6687 -3.5420 44 1 5.1952 4.3243 -3.8051 45 1 5.9622 5.1263 -5.1965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967272546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:38 Heat of formation + Delta-G solvation = -16.542498 kcal Electronic energy + Delta-G solvation = -25482.361121 eV Core-core repulsion = 22011.594973 eV Total energy + Delta-G solvation = -3470.766148 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30657 -39.65356 -38.74425 -36.26744 -34.86149 -34.64183 -33.36640 -31.34843 -29.67244 -29.06161 -26.41431 -25.69432 -24.45879 -23.26800 -22.89260 -22.19988 -21.37743 -20.12279 -19.04634 -18.81530 -17.68379 -17.11991 -16.86717 -16.35972 -16.12541 -15.84222 -15.32522 -15.24205 -15.18990 -14.97244 -14.69503 -14.44070 -14.42673 -13.93746 -13.81497 -13.54682 -13.41598 -13.29523 -12.92781 -12.86463 -12.61783 -12.45780 -12.37752 -12.26094 -12.12478 -11.79738 -11.73889 -11.69921 -11.56562 -11.32007 -11.14250 -10.86627 -10.32440 -9.71328 -9.57617 -8.97907 -8.24554 -5.54686 -0.58490 0.38631 0.82378 1.22860 1.25816 1.32432 1.36542 1.94376 2.10292 2.34637 2.98947 3.33603 3.60786 3.67021 3.80334 3.91277 3.99016 4.11898 4.25733 4.29082 4.32655 4.39246 4.44654 4.52182 4.65717 4.76266 4.77642 4.83544 4.86708 4.89567 4.97627 5.03512 5.06061 5.12113 5.14269 5.14810 5.16919 5.30908 5.33079 5.38273 5.39168 5.55128 5.81258 6.06478 6.36402 6.84761 7.06232 7.56202 7.95854 8.95329 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.004095 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.562879 B = 6835.299490 C = 7901.143474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C -0.179 4.179 4 C -0.162 4.162 5 C -0.058 4.058 6 C -0.307 4.307 7 C 0.578 3.422 8 O -0.579 6.579 9 N -0.705 5.705 10 C 0.144 3.856 11 H 0.055 0.945 12 C 0.119 3.881 13 N -0.616 5.616 14 C -0.247 4.247 15 H 0.059 0.941 16 C -0.033 4.033 17 N -0.954 5.954 18 Si 0.942 3.058 19 H -0.300 1.300 20 H -0.304 1.304 21 H -0.249 1.249 22 C 0.137 3.863 23 C -0.118 4.118 24 C -0.085 4.085 25 H 0.093 0.907 26 C -0.137 4.137 27 S 0.246 5.754 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.137 0.863 35 H 0.410 0.590 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.260 0.740 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -29.379 -4.898 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.299 4.299 4 C -0.192 4.192 5 C -0.093 4.093 6 C -0.427 4.427 7 C 0.366 3.634 8 O -0.461 6.461 9 N -0.356 5.356 10 C 0.037 3.963 11 H 0.074 0.926 12 C -0.007 4.007 13 N -0.341 5.341 14 C -0.377 4.377 15 H 0.076 0.924 16 C -0.228 4.228 17 N -0.600 5.600 18 Si 0.771 3.229 19 H -0.229 1.229 20 H -0.233 1.233 21 H -0.173 1.173 22 C 0.013 3.987 23 C -0.157 4.157 24 C -0.104 4.104 25 H 0.112 0.888 26 C -0.195 4.195 27 S 0.515 5.485 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.184 0.816 34 H 0.155 0.845 35 H 0.247 0.753 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.356 -28.922 -5.891 29.547 hybrid contribution -0.806 0.703 2.303 2.539 sum 0.550 -28.219 -3.588 28.452 Atomic orbital electron populations 1.21828 0.93645 1.03216 1.02140 1.20331 0.96533 0.87317 1.05218 1.24760 1.04934 1.03151 0.97073 1.20070 1.05033 0.92877 1.01173 1.20945 0.96169 0.97318 0.94845 1.24474 1.18996 0.99745 0.99442 1.17551 0.76942 0.86239 0.82658 1.90864 1.51139 1.44836 1.59231 1.45767 1.67656 1.16404 1.05820 1.21382 0.96156 0.82278 0.96447 0.92625 1.21546 0.95782 0.87601 0.95795 1.44429 1.70657 1.00770 1.18268 1.18905 1.08320 0.89690 1.20786 0.92366 1.25861 1.00750 0.98386 0.97782 1.69964 1.33671 1.35729 1.20625 0.85971 0.80298 0.77993 0.78598 1.22862 1.23295 1.17325 1.21284 0.93707 0.98884 0.84850 1.21997 0.97681 0.93960 1.02103 1.21328 0.99168 0.97220 0.92726 0.88827 1.21788 0.96727 0.97947 1.02992 1.82522 1.58928 0.99992 1.07080 0.92778 0.92973 0.90002 0.88974 0.87999 0.81588 0.84479 0.75265 0.94872 0.94557 0.93094 0.93552 0.92176 0.87571 0.93468 0.94043 0.91977 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.90 71.98 0.71 -0.68 16 2 C -0.05 -0.51 6.36 29.85 0.19 -0.32 16 3 C -0.18 -2.88 5.53 24.68 0.14 -2.75 16 4 C -0.16 -3.11 9.99 21.08 0.21 -2.90 16 5 C -0.06 -1.58 10.01 21.72 0.22 -1.36 16 6 C -0.31 -8.93 6.45 24.08 0.16 -8.78 16 7 C 0.58 21.85 7.75 86.42 0.67 22.52 16 8 O -0.58 -28.60 16.50 -4.36 -0.07 -28.67 16 9 N -0.70 -22.74 4.36 -446.89 -1.95 -24.69 16 10 C 0.14 5.40 2.05 44.93 0.09 5.49 16 11 H 0.06 2.54 7.58 -2.39 -0.02 2.52 16 12 C 0.12 5.57 3.75 86.22 0.32 5.89 16 13 N -0.62 -30.47 2.78 -699.94 -1.94 -32.41 16 14 C -0.25 -14.91 10.03 84.03 0.84 -14.07 16 15 H 0.06 3.76 8.05 -2.91 -0.02 3.73 16 16 C -0.03 -2.07 5.23 84.86 0.44 -1.63 16 17 N -0.95 -64.42 13.97 21.65 0.30 -64.12 16 18 Si 0.94 51.31 24.35 68.60 1.67 52.98 16 19 H -0.30 -16.87 6.62 99.48 0.66 -16.21 16 20 H -0.30 -16.45 7.11 99.48 0.71 -15.74 16 21 H -0.25 -12.48 6.64 99.48 0.66 -11.82 16 22 C 0.14 5.10 6.52 86.36 0.56 5.66 16 23 C -0.12 -3.42 5.36 30.67 0.16 -3.26 16 24 C -0.09 -2.30 2.27 -10.77 -0.02 -2.33 16 25 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 26 C -0.14 -2.85 9.02 71.98 0.65 -2.20 16 27 S 0.25 4.52 22.10 -56.49 -1.25 3.28 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 35 H 0.41 9.75 7.42 -92.71 -0.69 9.07 16 36 H 0.03 1.87 4.49 -2.39 -0.01 1.85 16 37 H 0.04 1.60 7.08 -2.39 -0.02 1.58 16 38 H 0.26 16.78 8.31 -92.70 -0.77 16.01 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 41 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.15 7.36 -2.39 -0.02 1.13 16 45 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -83.50 368.57 2.31 -81.20 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.20 Total: 13.12 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 5.35 Total: -0.69 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -3.59 Total: -121.21 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.07 Total: -28.67 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 1.67 Total: 52.98 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.25 Total: 3.28 kcal Total: -83.50 2.31 -81.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.653 kcal (2) G-P(sol) polarization free energy of solvation -83.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds