Wall clock time and date at job start Tue Mar 31 2020 13:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47086 * 2 1 4 4 C 1.37475 * 123.35486 * 265.21584 * 3 2 1 5 5 C 1.33813 * 115.10221 * 180.29794 * 4 3 2 6 6 S 1.70617 * 110.95313 * 359.72781 * 5 4 3 7 7 C 1.36654 * 123.35034 * 85.00543 * 3 2 1 8 8 C 1.46584 * 125.45802 * 359.97438 * 7 3 2 9 9 O 1.21707 * 119.99827 * 359.71911 * 8 7 3 10 10 N 1.34769 * 120.00155 * 179.72378 * 8 7 3 11 11 C 1.46499 * 120.00012 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.49648 * 325.06064 * 11 10 8 13 13 C 1.53195 * 109.52653 * 85.14594 * 11 10 8 14 14 N 1.46922 * 108.77454 * 174.60185 * 13 11 10 15 15 C 1.36936 * 120.62753 * 126.36838 * 14 13 11 16 16 H 1.07998 * 120.00346 * 332.62160 * 15 14 13 17 17 C 1.38822 * 119.99921 * 152.61834 * 15 14 13 18 18 N 1.31620 * 119.99991 * 159.36235 * 17 15 14 19 19 Si 1.86797 * 120.00076 * 339.36472 * 17 15 14 20 20 H 1.48495 * 109.47030 * 92.89526 * 19 17 15 21 21 H 1.48493 * 109.47302 * 212.90153 * 19 17 15 22 22 H 1.48506 * 109.46942 * 332.89825 * 19 17 15 23 23 C 1.46924 * 118.73983 * 306.38756 * 14 13 11 24 24 C 1.53185 * 108.76528 * 53.62191 * 23 14 13 25 25 C 1.53045 * 109.49550 * 204.99858 * 11 10 8 26 26 H 1.09005 * 109.45849 * 298.65415 * 25 11 10 27 27 C 1.52994 * 109.46068 * 58.62956 * 25 11 10 28 28 H 1.09000 * 109.46793 * 299.99847 * 1 2 3 29 29 H 1.09006 * 109.47023 * 59.99580 * 1 2 3 30 30 H 1.08993 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46793 * 240.00153 * 2 1 3 32 32 H 1.08992 * 109.47155 * 120.00246 * 2 1 3 33 33 H 1.08001 * 122.44794 * 0.02562 * 4 3 2 34 34 H 1.07994 * 124.52330 * 179.70834 * 5 4 3 35 35 H 0.97001 * 120.00066 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.58299 * 294.39251 * 13 11 10 37 37 H 1.09004 * 109.58599 * 54.81332 * 13 11 10 38 38 H 0.96999 * 120.00069 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58613 * 173.40342 * 23 14 13 40 40 H 1.09000 * 109.58532 * 293.67599 * 23 14 13 41 41 H 1.09000 * 109.48679 * 185.40187 * 24 23 14 42 42 H 1.08998 * 109.51439 * 65.29773 * 24 23 14 43 43 H 1.08998 * 109.47189 * 60.03079 * 27 25 11 44 44 H 1.08999 * 109.47146 * 300.02840 * 27 25 11 45 45 H 1.09005 * 109.47173 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3746 2.1015 -1.1443 5 6 2.8069 3.3533 -0.9524 6 16 2.7999 3.7536 0.7061 7 6 2.1891 2.1622 1.1372 8 6 1.8998 1.7025 2.4986 9 8 1.4783 0.5758 2.6838 10 7 2.1005 2.5274 3.5453 11 6 1.8118 2.0677 4.9061 12 1 0.9476 1.4035 4.8901 13 6 3.0253 1.3146 5.4603 14 7 2.7690 0.9745 6.8665 15 6 2.8857 -0.3177 7.3042 16 1 2.7276 -1.1367 6.6181 17 6 3.2074 -0.5752 8.6298 18 7 2.9316 -1.7488 9.1580 19 14 4.0316 0.7440 9.6641 20 1 2.9962 1.5227 10.3899 21 1 4.9474 0.1053 10.6430 22 1 4.8063 1.6529 8.7814 23 6 2.3847 2.0472 7.7940 24 6 1.1783 2.7918 7.2136 25 6 1.5129 3.2735 5.7999 26 1 2.3865 3.9245 5.8355 27 6 0.3228 4.0478 5.2301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.3042 1.6569 -2.1260 34 1 3.1188 4.0209 -1.7419 35 1 2.4367 3.4252 3.3978 36 1 3.1821 0.4014 4.8862 37 1 3.9102 1.9475 5.3929 38 1 3.1561 -1.9286 10.0844 39 1 2.1188 1.6174 8.7597 40 1 3.2182 2.7384 7.9188 41 1 0.9426 3.6493 7.8438 42 1 0.3201 2.1208 7.1756 43 1 -0.5508 3.3969 5.1946 44 1 0.5612 4.3913 4.2235 45 1 0.1101 4.9069 5.8664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968678023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:24 Heat of formation + Delta-G solvation = 9.328898 kcal Electronic energy + Delta-G solvation = -25716.733954 eV Core-core repulsion = 22247.089674 eV Total energy + Delta-G solvation = -3469.644280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.05634 -38.63587 -37.42666 -34.65373 -33.18270 -32.74643 -31.39990 -30.23631 -28.75386 -27.57775 -25.46405 -23.88578 -22.94729 -22.45710 -21.30440 -20.97570 -19.92105 -18.60804 -18.20154 -16.80833 -16.07869 -15.72788 -15.29491 -15.03808 -14.94774 -14.16107 -14.10127 -13.91066 -13.66642 -13.63450 -13.40966 -13.24422 -13.00094 -12.65658 -12.47946 -12.18359 -12.07500 -11.99369 -11.67450 -11.58029 -11.29350 -11.12267 -10.94658 -10.86543 -10.78983 -10.65171 -10.12930 -9.92599 -9.75131 -9.64409 -9.41990 -9.07992 -8.90099 -8.64156 -8.49143 -6.95200 -5.90643 -3.27128 0.38318 1.31063 1.69483 2.25153 3.24058 3.31071 3.33191 3.49944 3.52750 4.55657 4.63300 4.76796 4.95691 5.01328 5.02811 5.10083 5.15804 5.25285 5.28985 5.44528 5.45387 5.58817 5.68266 5.75221 5.81465 5.83893 5.86548 5.93597 6.02800 6.03441 6.11949 6.14741 6.25926 6.32849 6.35657 6.42484 6.49938 6.55764 6.62110 6.66290 6.78139 6.95814 7.62634 7.99534 8.33460 8.38931 8.97941 9.75432 10.11136 11.25352 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.003600 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.332926 B = 7776.633106 C = 8400.949979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C -0.021 4.021 4 C -0.144 4.144 5 C -0.232 4.232 6 S 0.186 5.814 7 C -0.261 4.261 8 C 0.586 3.414 9 O -0.514 6.514 10 N -0.718 5.718 11 C 0.134 3.866 12 H 0.093 0.907 13 C 0.144 3.856 14 N -0.601 5.601 15 C -0.258 4.258 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.882 3.118 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.122 3.878 24 C -0.125 4.125 25 C -0.093 4.093 26 H 0.068 0.932 27 C -0.144 4.144 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.391 0.609 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 14.565 -19.602 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.036 4.036 4 C -0.176 4.176 5 C -0.370 4.370 6 S 0.454 5.546 7 C -0.381 4.381 8 C 0.371 3.629 9 O -0.391 6.391 10 N -0.368 5.368 11 C 0.029 3.971 12 H 0.111 0.889 13 C 0.017 3.983 14 N -0.324 5.324 15 C -0.386 4.386 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.713 3.287 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.197 1.197 23 C -0.004 4.004 24 C -0.165 4.165 25 C -0.112 4.112 26 H 0.087 0.913 27 C -0.202 4.202 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.161 0.839 34 H 0.184 0.816 35 H 0.224 0.776 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.574 14.946 -18.479 23.906 hybrid contribution 0.410 0.066 -0.423 0.593 sum -2.164 15.012 -18.903 24.235 Atomic orbital electron populations 1.21594 0.94286 1.01868 1.01586 1.20433 0.96540 0.90480 1.03781 1.19553 0.96152 0.97525 0.90398 1.19930 1.03753 0.94199 0.99697 1.25193 1.08574 1.01485 1.01704 1.82949 1.60429 1.12305 0.98941 1.24566 1.16319 0.99313 0.97897 1.16890 0.78212 0.85232 0.82554 1.90847 1.45003 1.18466 1.84807 1.45972 1.67468 1.16424 1.06972 1.21756 1.01079 0.95933 0.78380 0.88851 1.21225 0.92990 0.98047 0.86074 1.44279 1.79139 1.05193 1.03809 1.18955 1.42068 0.81987 0.95611 0.89557 1.25261 0.99385 0.95877 0.96964 1.69843 1.48658 1.22890 1.13680 0.86956 0.79980 0.81838 0.79919 1.21624 1.23191 1.19650 1.21405 0.93811 0.90532 0.94641 1.22066 1.00580 0.99672 0.94203 1.21316 0.98204 0.95827 0.95844 0.91346 1.21841 0.98395 0.99856 1.00074 0.92118 0.93488 0.92263 0.91434 0.88384 0.83928 0.81573 0.77565 0.91312 0.96031 0.92793 0.90728 0.95671 0.92203 0.91320 0.92613 0.93224 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.77 37.16 0.36 -1.19 16 2 C -0.07 -0.87 5.50 -27.88 -0.15 -1.03 16 3 C -0.02 -0.25 5.16 -105.47 -0.54 -0.80 16 4 C -0.14 -1.35 9.96 -41.41 -0.41 -1.76 16 5 C -0.23 -1.91 10.92 29.18 0.32 -1.59 16 6 S 0.19 1.69 22.16 -107.50 -2.38 -0.69 16 7 C -0.26 -3.30 6.45 -36.79 -0.24 -3.54 16 8 C 0.59 9.05 7.74 -12.90 -0.10 8.95 16 9 O -0.51 -9.70 13.37 5.18 0.07 -9.63 16 10 N -0.72 -10.14 4.36 -55.02 -0.24 -10.38 16 11 C 0.13 2.27 2.06 -67.81 -0.14 2.13 16 12 H 0.09 1.84 7.57 -51.93 -0.39 1.45 16 13 C 0.14 2.98 6.09 -3.71 -0.02 2.95 16 14 N -0.60 -14.51 2.77 -172.32 -0.48 -14.99 16 15 C -0.26 -7.41 10.04 -15.06 -0.15 -7.56 16 16 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 17 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 18 N -0.91 -28.29 13.97 55.49 0.78 -27.52 16 19 Si 0.88 22.51 24.34 -169.99 -4.14 18.38 16 20 H -0.29 -7.04 6.62 56.52 0.37 -6.66 16 21 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 22 H -0.27 -6.79 6.64 56.52 0.38 -6.41 16 23 C 0.12 2.62 4.21 -3.72 -0.02 2.61 16 24 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 25 C -0.09 -1.37 2.27 -90.57 -0.21 -1.57 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 C -0.14 -1.74 9.02 37.15 0.34 -1.40 16 28 H 0.06 0.82 7.58 -51.93 -0.39 0.43 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.10 1.44 6.33 -51.93 -0.33 1.11 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.39 4.48 7.42 -40.82 -0.30 4.18 16 36 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.07 1.77 4.50 -51.93 -0.23 1.54 16 40 H 0.03 0.53 7.07 -51.93 -0.37 0.17 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -32.56 362.64 -9.20 -41.77 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.07 Total: 3.11 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.20 Total: -5.50 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.06 Total: -52.89 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.14 Total: 18.38 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.56 -9.20 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968678023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.094 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds