Wall clock time and date at job start Tue Mar 31 2020 13:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47086 * 2 1 4 4 C 1.37475 * 123.35486 * 265.21584 * 3 2 1 5 5 C 1.33813 * 115.10221 * 180.29794 * 4 3 2 6 6 S 1.70617 * 110.95313 * 359.72781 * 5 4 3 7 7 C 1.36654 * 123.35034 * 85.00543 * 3 2 1 8 8 C 1.46584 * 125.45802 * 359.97438 * 7 3 2 9 9 O 1.21707 * 119.99827 * 359.71911 * 8 7 3 10 10 N 1.34769 * 120.00155 * 179.72378 * 8 7 3 11 11 C 1.46499 * 120.00012 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.49648 * 325.06064 * 11 10 8 13 13 C 1.53195 * 109.52653 * 85.14594 * 11 10 8 14 14 N 1.46922 * 108.77454 * 174.60185 * 13 11 10 15 15 C 1.36936 * 120.62753 * 126.36838 * 14 13 11 16 16 H 1.07998 * 120.00346 * 332.62160 * 15 14 13 17 17 C 1.38822 * 119.99921 * 152.61834 * 15 14 13 18 18 N 1.31620 * 119.99991 * 159.36235 * 17 15 14 19 19 Si 1.86797 * 120.00076 * 339.36472 * 17 15 14 20 20 H 1.48495 * 109.47030 * 92.89526 * 19 17 15 21 21 H 1.48493 * 109.47302 * 212.90153 * 19 17 15 22 22 H 1.48506 * 109.46942 * 332.89825 * 19 17 15 23 23 C 1.46924 * 118.73983 * 306.38756 * 14 13 11 24 24 C 1.53185 * 108.76528 * 53.62191 * 23 14 13 25 25 C 1.53045 * 109.49550 * 204.99858 * 11 10 8 26 26 H 1.09005 * 109.45849 * 298.65415 * 25 11 10 27 27 C 1.52994 * 109.46068 * 58.62956 * 25 11 10 28 28 H 1.09000 * 109.46793 * 299.99847 * 1 2 3 29 29 H 1.09006 * 109.47023 * 59.99580 * 1 2 3 30 30 H 1.08993 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46793 * 240.00153 * 2 1 3 32 32 H 1.08992 * 109.47155 * 120.00246 * 2 1 3 33 33 H 1.08001 * 122.44794 * 0.02562 * 4 3 2 34 34 H 1.07994 * 124.52330 * 179.70834 * 5 4 3 35 35 H 0.97001 * 120.00066 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.58299 * 294.39251 * 13 11 10 37 37 H 1.09004 * 109.58599 * 54.81332 * 13 11 10 38 38 H 0.96999 * 120.00069 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.58613 * 173.40342 * 23 14 13 40 40 H 1.09000 * 109.58532 * 293.67599 * 23 14 13 41 41 H 1.09000 * 109.48679 * 185.40187 * 24 23 14 42 42 H 1.08998 * 109.51439 * 65.29773 * 24 23 14 43 43 H 1.08998 * 109.47189 * 60.03079 * 27 25 11 44 44 H 1.08999 * 109.47146 * 300.02840 * 27 25 11 45 45 H 1.09005 * 109.47173 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3746 2.1015 -1.1443 5 6 2.8069 3.3533 -0.9524 6 16 2.7999 3.7536 0.7061 7 6 2.1891 2.1622 1.1372 8 6 1.8998 1.7025 2.4986 9 8 1.4783 0.5758 2.6838 10 7 2.1005 2.5274 3.5453 11 6 1.8118 2.0677 4.9061 12 1 0.9476 1.4035 4.8901 13 6 3.0253 1.3146 5.4603 14 7 2.7690 0.9745 6.8665 15 6 2.8857 -0.3177 7.3042 16 1 2.7276 -1.1367 6.6181 17 6 3.2074 -0.5752 8.6298 18 7 2.9316 -1.7488 9.1580 19 14 4.0316 0.7440 9.6641 20 1 2.9962 1.5227 10.3899 21 1 4.9474 0.1053 10.6430 22 1 4.8063 1.6529 8.7814 23 6 2.3847 2.0472 7.7940 24 6 1.1783 2.7918 7.2136 25 6 1.5129 3.2735 5.7999 26 1 2.3865 3.9245 5.8355 27 6 0.3228 4.0478 5.2301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.3042 1.6569 -2.1260 34 1 3.1188 4.0209 -1.7419 35 1 2.4367 3.4252 3.3978 36 1 3.1821 0.4014 4.8862 37 1 3.9102 1.9475 5.3929 38 1 3.1561 -1.9286 10.0844 39 1 2.1188 1.6174 8.7597 40 1 3.2182 2.7384 7.9188 41 1 0.9426 3.6493 7.8438 42 1 0.3201 2.1208 7.1756 43 1 -0.5508 3.3969 5.1946 44 1 0.5612 4.3913 4.2235 45 1 0.1101 4.9069 5.8664 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968678023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:23 Heat of formation + Delta-G solvation = -12.058540 kcal Electronic energy + Delta-G solvation = -25717.661383 eV Core-core repulsion = 22247.089674 eV Total energy + Delta-G solvation = -3470.571709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27805 -39.81399 -38.62635 -36.28435 -34.62459 -33.65763 -33.42528 -31.53564 -29.90332 -29.12290 -26.48563 -25.58919 -24.35301 -23.30658 -22.94026 -22.16154 -21.36436 -19.71252 -19.10710 -18.77167 -17.37365 -16.94993 -16.90342 -16.35815 -16.04280 -15.68203 -15.29254 -15.20610 -15.07790 -14.83267 -14.66621 -14.49640 -14.41291 -13.87978 -13.79074 -13.60081 -13.35997 -13.21089 -12.85349 -12.72375 -12.63282 -12.53140 -12.39853 -12.22838 -12.02849 -11.80787 -11.67790 -11.60841 -11.39114 -11.29659 -10.95345 -10.75786 -10.24908 -9.74669 -9.36769 -8.94709 -8.18849 -5.53027 -0.45779 0.53044 0.95622 1.29066 1.41039 1.43570 1.51503 2.04965 2.19077 2.40196 3.03786 3.32899 3.66390 3.84031 3.89771 3.90548 3.98820 4.17148 4.29319 4.32295 4.38996 4.46833 4.49276 4.52325 4.55215 4.75081 4.80001 4.82157 4.87528 4.92849 4.96518 5.03020 5.08554 5.09915 5.10401 5.14214 5.27985 5.33506 5.38320 5.42947 5.54952 5.55170 5.82616 6.08955 6.49140 6.87563 7.19541 7.57857 7.95855 9.01621 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.003600 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.332926 B = 7776.633106 C = 8400.949979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 C -0.025 4.025 4 C -0.158 4.158 5 C -0.213 4.213 6 S 0.234 5.766 7 C -0.306 4.306 8 C 0.581 3.419 9 O -0.563 6.563 10 N -0.705 5.705 11 C 0.149 3.851 12 H 0.055 0.945 13 C 0.145 3.855 14 N -0.615 5.615 15 C -0.257 4.257 16 H 0.035 0.965 17 C -0.035 4.035 18 N -0.959 5.959 19 Si 0.958 3.042 20 H -0.266 1.266 21 H -0.310 1.310 22 H -0.257 1.257 23 C 0.114 3.886 24 C -0.119 4.119 25 C -0.085 4.085 26 H 0.093 0.907 27 C -0.137 4.137 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.167 0.833 34 H 0.203 0.797 35 H 0.408 0.592 36 H 0.030 0.970 37 H 0.041 0.959 38 H 0.263 0.737 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 19.690 -21.413 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 C -0.041 4.041 4 C -0.188 4.188 5 C -0.350 4.350 6 S 0.503 5.497 7 C -0.426 4.426 8 C 0.369 3.631 9 O -0.444 6.444 10 N -0.357 5.357 11 C 0.043 3.957 12 H 0.074 0.926 13 C 0.019 3.981 14 N -0.340 5.340 15 C -0.387 4.387 16 H 0.053 0.947 17 C -0.230 4.230 18 N -0.605 5.605 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.239 1.239 22 H -0.182 1.182 23 C -0.010 4.010 24 C -0.159 4.159 25 C -0.104 4.104 26 H 0.111 0.889 27 C -0.194 4.194 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.184 0.816 34 H 0.220 0.780 35 H 0.245 0.755 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.882 20.156 -20.326 28.687 hybrid contribution 0.189 -1.586 -0.021 1.598 sum -1.694 18.569 -20.347 27.599 Atomic orbital electron populations 1.21531 0.94102 1.01919 1.01160 1.20391 0.96773 0.91286 1.02997 1.19761 0.95689 0.97240 0.91376 1.20071 1.04391 0.94674 0.99707 1.25704 1.05875 1.01317 1.02128 1.82701 1.58855 1.08858 0.99285 1.24381 1.19520 1.02401 0.96316 1.17401 0.77139 0.84590 0.83972 1.90828 1.47134 1.20632 1.85784 1.45717 1.67339 1.17050 1.05550 1.21288 0.97569 0.96515 0.80353 0.92625 1.21267 0.95527 0.97205 0.84125 1.44335 1.79947 1.04221 1.05538 1.18769 1.41540 0.83287 0.95062 0.94748 1.25985 0.99996 0.98630 0.98373 1.69998 1.50466 1.25748 1.14296 0.85741 0.78823 0.78924 0.77934 1.19164 1.23889 1.18153 1.21556 0.96228 0.89983 0.93273 1.21992 0.97579 1.00131 0.96170 1.21294 1.00569 0.94857 0.93691 0.88866 1.21776 0.96283 0.99896 1.01421 0.94968 0.91216 0.92074 0.89082 0.92180 0.81567 0.77972 0.75498 0.95146 0.94107 0.92776 0.93072 0.93763 0.88312 0.93330 0.94045 0.91560 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.77 71.98 0.70 -2.38 16 2 C -0.08 -1.87 5.50 29.85 0.16 -1.70 16 3 C -0.02 -0.56 5.16 -20.42 -0.11 -0.67 16 4 C -0.16 -2.47 9.96 21.08 0.21 -2.26 16 5 C -0.21 -2.58 10.92 66.81 0.73 -1.85 16 6 S 0.23 3.51 22.16 -56.49 -1.25 2.26 16 7 C -0.31 -7.60 6.45 24.08 0.16 -7.44 16 8 C 0.58 18.72 7.74 86.42 0.67 19.39 16 9 O -0.56 -23.38 13.37 -4.37 -0.06 -23.44 16 10 N -0.70 -19.75 4.36 -446.21 -1.95 -21.70 16 11 C 0.15 5.14 2.06 45.07 0.09 5.23 16 12 H 0.06 2.36 7.57 -2.39 -0.02 2.34 16 13 C 0.15 6.23 6.09 86.36 0.53 6.75 16 14 N -0.62 -30.63 2.77 -699.11 -1.94 -32.56 16 15 C -0.26 -15.71 10.04 84.04 0.84 -14.86 16 16 H 0.03 2.39 8.06 -2.91 -0.02 2.37 16 17 C -0.04 -2.15 5.23 84.86 0.44 -1.70 16 18 N -0.96 -62.85 13.97 21.65 0.30 -62.55 16 19 Si 0.96 47.23 24.34 68.60 1.67 48.90 16 20 H -0.27 -12.04 6.62 99.48 0.66 -11.38 16 21 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 22 H -0.26 -11.97 6.64 99.48 0.66 -11.31 16 23 C 0.11 4.75 4.21 86.36 0.36 5.11 16 24 C -0.12 -3.83 5.36 30.67 0.16 -3.66 16 25 C -0.09 -2.29 2.27 -10.76 -0.02 -2.32 16 26 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 27 C -0.14 -2.83 9.02 71.98 0.65 -2.18 16 28 H 0.03 0.93 7.58 -2.39 -0.02 0.91 16 29 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 32 H 0.06 1.96 6.33 -2.39 -0.02 1.94 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 34 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.41 8.44 7.42 -92.71 -0.69 7.75 16 36 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 39 H 0.05 2.37 4.50 -2.39 -0.01 2.36 16 40 H 0.04 1.71 7.07 -2.39 -0.02 1.69 16 41 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.17 7.36 -2.39 -0.02 1.15 16 45 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -79.06 362.64 2.57 -76.49 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.21 Total: 17.14 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.59 Total: -4.54 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -3.58 Total: -116.81 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.67 Total: 48.90 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.25 Total: 2.26 kcal Total: -79.06 2.57 -76.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968678023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.429 kcal (2) G-P(sol) polarization free energy of solvation -79.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds