Wall clock time and date at job start Tue Mar 31 2020 13:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46969 * 2 1 4 4 C 1.37464 * 123.35513 * 264.97514 * 3 2 1 5 5 C 1.33814 * 115.10402 * 180.02562 * 4 3 2 6 6 S 1.70615 * 110.95505 * 0.26918 * 5 4 3 7 7 C 1.36651 * 123.34778 * 85.01137 * 3 2 1 8 8 C 1.46579 * 125.45912 * 0.02562 * 7 3 2 9 9 O 1.21704 * 120.00245 * 359.97438 * 8 7 3 10 10 N 1.34781 * 120.00074 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00235 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.49611 * 35.05468 * 11 10 8 13 13 C 1.53191 * 109.49446 * 274.99612 * 11 10 8 14 14 N 1.46928 * 108.77804 * 294.68389 * 13 11 10 15 15 C 1.36930 * 120.62976 * 126.36945 * 14 13 11 16 16 H 1.07992 * 120.00404 * 332.63728 * 15 14 13 17 17 C 1.38815 * 119.99868 * 152.63321 * 15 14 13 18 18 N 1.31618 * 120.00380 * 159.36215 * 17 15 14 19 19 Si 1.86800 * 119.99877 * 339.37184 * 17 15 14 20 20 H 1.48500 * 109.47683 * 92.92659 * 19 17 15 21 21 H 1.48499 * 109.46939 * 212.92790 * 19 17 15 22 22 H 1.48498 * 109.47358 * 332.92449 * 19 17 15 23 23 C 1.46922 * 118.73426 * 306.39173 * 14 13 11 24 24 C 1.53191 * 108.77620 * 53.61029 * 23 14 13 25 25 C 1.53032 * 109.49849 * 155.15892 * 11 10 8 26 26 H 1.09005 * 109.46397 * 178.60640 * 25 11 10 27 27 C 1.53001 * 109.46033 * 298.56381 * 25 11 10 28 28 H 1.08998 * 109.47186 * 60.00174 * 1 2 3 29 29 H 1.09004 * 109.46630 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47505 * 299.99289 * 1 2 3 31 31 H 1.08999 * 109.46988 * 240.00240 * 2 1 3 32 32 H 1.08998 * 109.47186 * 119.99825 * 2 1 3 33 33 H 1.08001 * 122.45134 * 0.06165 * 4 3 2 34 34 H 1.08004 * 124.52701 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99974 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.58711 * 54.46922 * 13 11 10 37 37 H 1.09003 * 109.58467 * 174.74833 * 13 11 10 38 38 H 0.96997 * 120.00616 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.58724 * 173.39615 * 23 14 13 40 40 H 1.08998 * 109.59160 * 293.81871 * 23 14 13 41 41 H 1.09003 * 109.49908 * 65.31472 * 24 23 14 42 42 H 1.09003 * 109.49824 * 185.40835 * 24 23 14 43 43 H 1.08998 * 109.47163 * 60.00592 * 27 25 11 44 44 H 1.09004 * 109.47185 * 180.02562 * 27 25 11 45 45 H 1.08996 * 109.47320 * 300.00016 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3790 2.0999 -1.1438 5 6 2.8051 3.3539 -0.9524 6 16 2.8002 3.7536 0.7062 7 6 2.1891 2.1622 1.1372 8 6 1.9009 1.7020 2.4987 9 8 1.4848 0.5735 2.6844 10 7 2.0968 2.5286 3.5451 11 6 1.8083 2.0689 4.9059 12 1 2.0540 1.0105 4.9921 13 6 0.3211 2.2749 5.2105 14 7 0.0348 3.7160 5.2170 15 6 -0.9661 4.2319 4.4379 16 1 -1.2526 3.7310 3.5251 17 6 -1.6126 5.3989 4.8214 18 7 -2.2624 6.1152 3.9287 19 14 -1.5600 5.9529 6.6046 20 1 -0.4223 6.8872 6.7995 21 1 -2.8304 6.6418 6.9465 22 1 -1.3857 4.7702 7.4855 23 6 0.8433 4.5929 6.0749 24 6 2.3245 4.3610 5.7605 25 6 2.6453 2.8715 5.9044 26 1 2.4120 2.5461 6.9182 27 6 4.1318 2.6409 5.6248 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3119 1.6542 -2.1252 34 1 3.1155 4.0222 -1.7421 35 1 2.4288 3.4280 3.3972 36 1 -0.2801 1.7864 4.4436 37 1 0.0855 1.8489 6.1858 38 1 -2.7145 6.9305 4.1967 39 1 0.5867 5.6339 5.8785 40 1 0.6508 4.3583 7.1218 41 1 2.5344 4.6815 4.7400 42 1 2.9381 4.9341 6.4557 43 1 4.3655 2.9658 4.6110 44 1 4.7282 3.2121 6.3363 45 1 4.3607 1.5803 5.7284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968678025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:34 Heat of formation + Delta-G solvation = 10.465010 kcal Electronic energy + Delta-G solvation = -26407.338979 eV Core-core repulsion = 22937.743964 eV Total energy + Delta-G solvation = -3469.595015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.96064 -38.56500 -37.20455 -34.38284 -32.93455 -32.50683 -31.40867 -30.22869 -28.78600 -27.53009 -25.24594 -23.86033 -22.86858 -22.25537 -21.49503 -21.22646 -19.01449 -18.69919 -17.93615 -16.71896 -15.88520 -15.46431 -15.24051 -15.04331 -14.74419 -14.01256 -13.88401 -13.84340 -13.65888 -13.57616 -13.34490 -13.23912 -12.74466 -12.54975 -12.32605 -12.20297 -11.93166 -11.76276 -11.61284 -11.50942 -11.31231 -11.23747 -10.87595 -10.68502 -10.62997 -10.53861 -10.22323 -9.90556 -9.71603 -9.51569 -9.40991 -8.88613 -8.69242 -8.39884 -8.34375 -6.93711 -5.93068 -3.28628 0.66420 1.61555 2.00668 2.50120 3.30732 3.46086 3.48734 3.51207 3.62963 4.53459 4.87689 4.94441 4.96109 5.09030 5.11852 5.18924 5.23980 5.32405 5.43471 5.50391 5.63917 5.72911 5.73968 5.81328 5.84137 5.91503 5.97841 6.06730 6.08409 6.11568 6.17394 6.21793 6.31850 6.37170 6.41310 6.52732 6.56381 6.61159 6.63155 6.70062 6.78373 6.98740 7.88151 7.98264 8.34927 8.56556 8.96078 9.73848 10.10555 11.22921 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.004956 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.312733 B = 5647.973509 C = 6232.715835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.028 4.028 4 C -0.147 4.147 5 C -0.236 4.236 6 S 0.204 5.796 7 C -0.258 4.258 8 C 0.592 3.408 9 O -0.535 6.535 10 N -0.697 5.697 11 C 0.136 3.864 12 H 0.084 0.916 13 C 0.137 3.863 14 N -0.601 5.601 15 C -0.253 4.253 16 H 0.083 0.917 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.882 3.118 20 H -0.290 1.290 21 H -0.305 1.305 22 H -0.271 1.271 23 C 0.123 3.877 24 C -0.131 4.131 25 C -0.095 4.095 26 H 0.081 0.919 27 C -0.144 4.144 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.396 0.604 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.073 0.927 40 H 0.026 0.974 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.186 -6.981 -5.339 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.043 4.043 4 C -0.179 4.179 5 C -0.374 4.374 6 S 0.473 5.527 7 C -0.379 4.379 8 C 0.378 3.622 9 O -0.414 6.414 10 N -0.348 5.348 11 C 0.030 3.970 12 H 0.102 0.898 13 C 0.010 3.990 14 N -0.324 5.324 15 C -0.381 4.381 16 H 0.101 0.899 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.713 3.287 20 H -0.218 1.218 21 H -0.233 1.233 22 H -0.196 1.196 23 C -0.003 4.003 24 C -0.170 4.170 25 C -0.114 4.114 26 H 0.099 0.901 27 C -0.202 4.202 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.158 0.842 34 H 0.183 0.817 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.167 -6.288 -4.398 16.112 hybrid contribution -0.338 -0.065 -0.130 0.368 sum 13.830 -6.353 -4.529 15.878 Atomic orbital electron populations 1.21607 0.94241 1.01493 1.02185 1.20366 0.96594 0.90610 1.03095 1.19470 0.96789 0.97573 0.90438 1.19859 1.04246 0.94250 0.99509 1.25214 1.08901 1.01219 1.02081 1.83158 1.59072 1.12070 0.98436 1.24523 1.16233 0.99180 0.97915 1.16816 0.77691 0.85036 0.82690 1.90745 1.46418 1.19287 1.85000 1.45759 1.66438 1.16347 1.06225 1.21542 0.97327 0.97946 0.80185 0.89759 1.21339 0.92519 0.85929 0.99248 1.44299 1.36711 1.00910 1.50524 1.18876 1.10121 1.07756 1.01334 0.89921 1.25270 0.97619 0.97442 0.97235 1.69837 1.37522 1.15108 1.32665 0.86968 0.75585 0.78148 0.87986 1.21788 1.23328 1.19643 1.21371 0.89259 0.96006 0.93639 1.22099 0.98899 0.94737 1.01313 1.21330 0.94443 0.96443 0.99205 0.90112 1.21839 0.95742 1.01200 1.01405 0.93372 0.92618 0.91743 0.91817 0.88830 0.84178 0.81687 0.76784 0.91233 0.95048 0.92874 0.90858 0.95615 0.92212 0.92271 0.92918 0.92817 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.78 37.16 0.36 -1.56 16 2 C -0.07 -0.91 5.50 -27.88 -0.15 -1.06 16 3 C -0.03 -0.40 5.16 -105.48 -0.54 -0.94 16 4 C -0.15 -1.79 9.96 -41.42 -0.41 -2.20 16 5 C -0.24 -2.74 10.92 29.18 0.32 -2.42 16 6 S 0.20 2.71 22.16 -107.50 -2.38 0.32 16 7 C -0.26 -4.07 6.45 -36.79 -0.24 -4.31 16 8 C 0.59 10.41 7.74 -12.90 -0.10 10.31 16 9 O -0.53 -10.32 13.38 5.18 0.07 -10.25 16 10 N -0.70 -11.66 4.25 -55.03 -0.23 -11.89 16 11 C 0.14 2.24 2.24 -67.81 -0.15 2.09 16 12 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 13 C 0.14 2.74 6.12 -3.71 -0.02 2.72 16 14 N -0.60 -13.80 2.69 -172.32 -0.46 -14.27 16 15 C -0.25 -6.96 10.04 -15.06 -0.15 -7.12 16 16 H 0.08 2.52 8.05 -52.49 -0.42 2.09 16 17 C 0.02 0.66 5.23 -17.43 -0.09 0.56 16 18 N -0.91 -27.67 13.97 55.49 0.78 -26.89 16 19 Si 0.88 22.17 24.35 -169.99 -4.14 18.03 16 20 H -0.29 -6.98 6.62 56.52 0.37 -6.61 16 21 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 22 H -0.27 -6.72 6.64 56.52 0.38 -6.34 16 23 C 0.12 2.54 4.20 -3.71 -0.02 2.53 16 24 C -0.13 -2.11 5.20 -26.61 -0.14 -2.25 16 25 C -0.10 -1.36 2.48 -90.58 -0.22 -1.59 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 C -0.14 -1.71 9.05 37.16 0.34 -1.37 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.10 7.60 -51.93 -0.39 0.70 16 31 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.09 1.41 6.32 -51.93 -0.33 1.08 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.40 6.42 5.75 -40.82 -0.23 6.19 16 36 H 0.07 1.54 7.93 -51.93 -0.41 1.13 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 39 H 0.07 1.68 4.49 -51.93 -0.23 1.45 16 40 H 0.03 0.53 7.08 -51.93 -0.37 0.16 16 41 H 0.06 0.98 6.40 -51.93 -0.33 0.64 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -31.26 359.51 -9.11 -40.37 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.93 Total: 5.76 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -1.22 Total: -6.60 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.08 Total: -53.06 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.38 Total: 0.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.26 -9.11 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968678025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.832 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds