Wall clock time and date at job start Tue Mar 31 2020 13:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46969 * 2 1 4 4 C 1.37464 * 123.35513 * 264.97514 * 3 2 1 5 5 C 1.33814 * 115.10402 * 180.02562 * 4 3 2 6 6 S 1.70615 * 110.95505 * 0.26918 * 5 4 3 7 7 C 1.36651 * 123.34778 * 85.01137 * 3 2 1 8 8 C 1.46579 * 125.45912 * 0.02562 * 7 3 2 9 9 O 1.21704 * 120.00245 * 359.97438 * 8 7 3 10 10 N 1.34781 * 120.00074 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00235 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.49611 * 35.05468 * 11 10 8 13 13 C 1.53191 * 109.49446 * 274.99612 * 11 10 8 14 14 N 1.46928 * 108.77804 * 294.68389 * 13 11 10 15 15 C 1.36930 * 120.62976 * 126.36945 * 14 13 11 16 16 H 1.07992 * 120.00404 * 332.63728 * 15 14 13 17 17 C 1.38815 * 119.99868 * 152.63321 * 15 14 13 18 18 N 1.31618 * 120.00380 * 159.36215 * 17 15 14 19 19 Si 1.86800 * 119.99877 * 339.37184 * 17 15 14 20 20 H 1.48500 * 109.47683 * 92.92659 * 19 17 15 21 21 H 1.48499 * 109.46939 * 212.92790 * 19 17 15 22 22 H 1.48498 * 109.47358 * 332.92449 * 19 17 15 23 23 C 1.46922 * 118.73426 * 306.39173 * 14 13 11 24 24 C 1.53191 * 108.77620 * 53.61029 * 23 14 13 25 25 C 1.53032 * 109.49849 * 155.15892 * 11 10 8 26 26 H 1.09005 * 109.46397 * 178.60640 * 25 11 10 27 27 C 1.53001 * 109.46033 * 298.56381 * 25 11 10 28 28 H 1.08998 * 109.47186 * 60.00174 * 1 2 3 29 29 H 1.09004 * 109.46630 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47505 * 299.99289 * 1 2 3 31 31 H 1.08999 * 109.46988 * 240.00240 * 2 1 3 32 32 H 1.08998 * 109.47186 * 119.99825 * 2 1 3 33 33 H 1.08001 * 122.45134 * 0.06165 * 4 3 2 34 34 H 1.08004 * 124.52701 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99974 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.58711 * 54.46922 * 13 11 10 37 37 H 1.09003 * 109.58467 * 174.74833 * 13 11 10 38 38 H 0.96997 * 120.00616 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.58724 * 173.39615 * 23 14 13 40 40 H 1.08998 * 109.59160 * 293.81871 * 23 14 13 41 41 H 1.09003 * 109.49908 * 65.31472 * 24 23 14 42 42 H 1.09003 * 109.49824 * 185.40835 * 24 23 14 43 43 H 1.08998 * 109.47163 * 60.00592 * 27 25 11 44 44 H 1.09004 * 109.47185 * 180.02562 * 27 25 11 45 45 H 1.08996 * 109.47320 * 300.00016 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3790 2.0999 -1.1438 5 6 2.8051 3.3539 -0.9524 6 16 2.8002 3.7536 0.7062 7 6 2.1891 2.1622 1.1372 8 6 1.9009 1.7020 2.4987 9 8 1.4848 0.5735 2.6844 10 7 2.0968 2.5286 3.5451 11 6 1.8083 2.0689 4.9059 12 1 2.0540 1.0105 4.9921 13 6 0.3211 2.2749 5.2105 14 7 0.0348 3.7160 5.2170 15 6 -0.9661 4.2319 4.4379 16 1 -1.2526 3.7310 3.5251 17 6 -1.6126 5.3989 4.8214 18 7 -2.2624 6.1152 3.9287 19 14 -1.5600 5.9529 6.6046 20 1 -0.4223 6.8872 6.7995 21 1 -2.8304 6.6418 6.9465 22 1 -1.3857 4.7702 7.4855 23 6 0.8433 4.5929 6.0749 24 6 2.3245 4.3610 5.7605 25 6 2.6453 2.8715 5.9044 26 1 2.4120 2.5461 6.9182 27 6 4.1318 2.6409 5.6248 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.3119 1.6542 -2.1252 34 1 3.1155 4.0222 -1.7421 35 1 2.4288 3.4280 3.3972 36 1 -0.2801 1.7864 4.4436 37 1 0.0855 1.8489 6.1858 38 1 -2.7145 6.9305 4.1967 39 1 0.5867 5.6339 5.8785 40 1 0.6508 4.3583 7.1218 41 1 2.5344 4.6815 4.7400 42 1 2.9381 4.9341 6.4557 43 1 4.3655 2.9658 4.6110 44 1 4.7282 3.2121 6.3363 45 1 4.3607 1.5803 5.7284 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968678025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:33 Heat of formation + Delta-G solvation = -8.843648 kcal Electronic energy + Delta-G solvation = -26408.176265 eV Core-core repulsion = 22937.743964 eV Total energy + Delta-G solvation = -3470.432301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30114 -39.81610 -38.50080 -36.07697 -34.30560 -33.62392 -33.37607 -31.63680 -29.99643 -29.04657 -26.44894 -25.51859 -24.34215 -23.32996 -23.04313 -22.51469 -20.48120 -19.89838 -19.11035 -18.60504 -17.23675 -17.03973 -16.80074 -16.29465 -16.05870 -15.49290 -15.19732 -15.17901 -15.08975 -14.95385 -14.66766 -14.43044 -14.24050 -13.89368 -13.80818 -13.61436 -13.27223 -13.07954 -12.94676 -12.82627 -12.66101 -12.41020 -12.35364 -12.21776 -11.99654 -11.84084 -11.64116 -11.57363 -11.37391 -11.17371 -10.84421 -10.72430 -10.11854 -9.70075 -9.39735 -8.85926 -8.14853 -5.46528 -0.42517 0.55271 0.98698 1.29446 1.42583 1.45375 1.51478 2.15951 2.35269 2.41930 3.07826 3.32115 3.71955 3.88873 3.90395 3.92266 4.00663 4.18886 4.31158 4.33991 4.47586 4.51407 4.53073 4.54985 4.67829 4.71197 4.77699 4.84287 4.88290 4.94516 4.98353 5.01483 5.07708 5.08945 5.12446 5.18275 5.32041 5.36561 5.42735 5.45221 5.55491 5.63510 5.87004 6.12246 6.55158 6.92708 7.22683 7.63286 8.02420 9.05353 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.004956 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.312733 B = 5647.973509 C = 6232.715835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.028 4.028 4 C -0.155 4.155 5 C -0.218 4.218 6 S 0.199 5.801 7 C -0.302 4.302 8 C 0.584 3.416 9 O -0.563 6.563 10 N -0.696 5.696 11 C 0.142 3.858 12 H 0.090 0.910 13 C 0.136 3.864 14 N -0.610 5.610 15 C -0.238 4.238 16 H 0.034 0.966 17 C -0.034 4.034 18 N -0.958 5.958 19 Si 0.952 3.048 20 H -0.269 1.269 21 H -0.316 1.316 22 H -0.262 1.262 23 C 0.116 3.884 24 C -0.123 4.123 25 C -0.087 4.087 26 H 0.096 0.904 27 C -0.136 4.136 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.172 0.828 34 H 0.201 0.799 35 H 0.399 0.601 36 H 0.033 0.967 37 H 0.046 0.954 38 H 0.260 0.740 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.979 -6.895 -4.971 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 C -0.044 4.044 4 C -0.186 4.186 5 C -0.355 4.355 6 S 0.468 5.532 7 C -0.422 4.422 8 C 0.372 3.628 9 O -0.445 6.445 10 N -0.346 5.346 11 C 0.036 3.964 12 H 0.107 0.893 13 C 0.010 3.990 14 N -0.335 5.335 15 C -0.368 4.368 16 H 0.052 0.948 17 C -0.229 4.229 18 N -0.604 5.604 19 Si 0.781 3.219 20 H -0.195 1.195 21 H -0.245 1.245 22 H -0.187 1.187 23 C -0.009 4.009 24 C -0.162 4.162 25 C -0.106 4.106 26 H 0.114 0.886 27 C -0.194 4.194 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.189 0.811 34 H 0.218 0.782 35 H 0.235 0.765 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.016 -6.215 -4.003 18.553 hybrid contribution -1.232 -0.163 -0.381 1.300 sum 15.784 -6.378 -4.384 17.580 Atomic orbital electron populations 1.21550 0.94917 1.02009 1.00542 1.20366 0.95881 0.90567 1.03673 1.19831 0.95765 0.97898 0.90925 1.20127 1.04067 0.94380 0.99982 1.25662 1.06877 1.01401 1.01584 1.83109 1.58992 1.10861 1.00241 1.24518 1.19140 1.01052 0.97447 1.17201 0.77089 0.84817 0.83715 1.90712 1.47690 1.20415 1.85648 1.45766 1.66227 1.16365 1.06269 1.21463 0.95056 0.98938 0.80971 0.89256 1.21403 0.94764 0.84094 0.98754 1.44313 1.36305 1.02392 1.50473 1.18638 1.11010 1.07051 1.00106 0.94784 1.25889 0.97926 0.97863 1.01209 1.69980 1.39661 1.16032 1.34735 0.85846 0.75553 0.78148 0.82386 1.19503 1.24533 1.18666 1.21484 0.91819 0.94119 0.93433 1.22015 0.95791 0.96534 1.01878 1.21315 0.95798 0.94556 0.98946 0.88625 1.21763 0.93612 1.02155 1.01840 0.92257 0.91079 0.95951 0.88497 0.90863 0.81077 0.78240 0.76526 0.94806 0.93637 0.93066 0.93111 0.94489 0.92831 0.88876 0.93303 0.90565 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.78 71.98 0.70 -3.08 16 2 C -0.07 -1.75 5.50 29.85 0.16 -1.59 16 3 C -0.03 -0.79 5.16 -20.42 -0.11 -0.90 16 4 C -0.15 -3.40 9.96 21.08 0.21 -3.19 16 5 C -0.22 -4.50 10.92 66.81 0.73 -3.77 16 6 S 0.20 5.19 22.16 -56.49 -1.25 3.94 16 7 C -0.30 -9.72 6.45 24.08 0.16 -9.57 16 8 C 0.58 21.48 7.74 86.42 0.67 22.15 16 9 O -0.56 -22.98 13.38 -4.36 -0.06 -23.04 16 10 N -0.70 -23.76 4.25 -446.23 -1.90 -25.66 16 11 C 0.14 4.63 2.24 45.07 0.10 4.73 16 12 H 0.09 2.86 7.58 -2.39 -0.02 2.84 16 13 C 0.14 5.58 6.12 86.36 0.53 6.11 16 14 N -0.61 -28.42 2.69 -699.11 -1.88 -30.30 16 15 C -0.24 -13.75 10.04 84.04 0.84 -12.90 16 16 H 0.03 2.25 8.05 -2.91 -0.02 2.23 16 17 C -0.03 -2.02 5.23 84.86 0.44 -1.58 16 18 N -0.96 -60.72 13.97 21.65 0.30 -60.42 16 19 Si 0.95 46.44 24.35 68.60 1.67 48.11 16 20 H -0.27 -12.09 6.62 99.48 0.66 -11.43 16 21 H -0.32 -15.90 7.11 99.48 0.71 -15.19 16 22 H -0.26 -12.25 6.64 99.48 0.66 -11.59 16 23 C 0.12 4.60 4.20 86.36 0.36 4.97 16 24 C -0.12 -3.63 5.20 30.67 0.16 -3.47 16 25 C -0.09 -2.26 2.48 -10.77 -0.03 -2.29 16 26 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 27 C -0.14 -2.75 9.05 71.98 0.65 -2.10 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16 30 H 0.02 0.80 7.60 -2.39 -0.02 0.78 16 31 H 0.10 1.91 8.12 -2.39 -0.02 1.89 16 32 H 0.07 2.27 6.32 -2.39 -0.02 2.25 16 33 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.40 13.06 5.75 -92.71 -0.53 12.53 16 36 H 0.03 1.59 7.93 -2.38 -0.02 1.58 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.05 2.25 4.49 -2.39 -0.01 2.24 16 40 H 0.04 1.41 7.08 -2.39 -0.02 1.39 16 41 H 0.05 1.66 6.40 -2.39 -0.02 1.64 16 42 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 1.03 7.54 -2.39 -0.02 1.01 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.58 359.51 2.84 -69.73 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.37 Total: 24.11 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.59 Total: -6.48 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -3.47 Total: -116.37 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.67 Total: 48.11 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.25 Total: 3.94 kcal Total: -72.58 2.84 -69.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968678025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.889 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds