Wall clock time and date at job start Tue Mar 31 2020 13:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47123 * 2 1 4 4 C 1.37473 * 123.34854 * 264.97836 * 3 2 1 5 5 C 1.33823 * 115.10243 * 180.02562 * 4 3 2 6 6 S 1.70617 * 110.95179 * 359.72655 * 5 4 3 7 7 C 1.36648 * 123.35719 * 84.99673 * 3 2 1 8 8 C 1.46582 * 125.45266 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00416 * 359.97438 * 8 7 3 10 10 N 1.34783 * 119.99799 * 179.97438 * 8 7 3 11 11 C 1.46497 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.50206 * 324.94017 * 11 10 8 13 13 C 1.53202 * 109.49589 * 85.00370 * 11 10 8 14 14 N 1.46929 * 108.77455 * 65.31453 * 13 11 10 15 15 C 1.36930 * 120.63078 * 233.58823 * 14 13 11 16 16 H 1.07996 * 120.00049 * 151.85197 * 15 14 13 17 17 C 1.38816 * 120.00324 * 331.84993 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.06571 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.06593 * 17 15 14 20 20 H 1.48500 * 109.46960 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47338 * 119.99948 * 19 17 15 22 22 H 1.48503 * 109.47085 * 239.99957 * 19 17 15 23 23 C 1.46924 * 118.73622 * 53.61050 * 14 13 11 24 24 C 1.53194 * 108.89447 * 306.31812 * 23 14 13 25 25 C 1.53036 * 109.50038 * 204.83815 * 11 10 8 26 26 H 1.09000 * 109.46285 * 181.40842 * 25 11 10 27 27 C 1.53003 * 109.45564 * 61.43706 * 25 11 10 28 28 H 1.09003 * 109.46955 * 59.99656 * 1 2 3 29 29 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46567 * 300.00103 * 1 2 3 31 31 H 1.08998 * 109.47234 * 239.99791 * 2 1 3 32 32 H 1.09000 * 109.47199 * 119.99622 * 2 1 3 33 33 H 1.07999 * 122.45401 * 359.97438 * 4 3 2 34 34 H 1.07993 * 124.52259 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99697 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.58325 * 305.52895 * 13 11 10 37 37 H 1.08995 * 109.70381 * 185.17083 * 13 11 10 38 38 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.59145 * 66.17901 * 23 14 13 40 40 H 1.09001 * 109.58665 * 186.46252 * 23 14 13 41 41 H 1.08999 * 109.49595 * 174.66017 * 24 23 14 42 42 H 1.08997 * 109.49661 * 294.75715 * 24 23 14 43 43 H 1.09000 * 109.47109 * 60.00027 * 27 25 11 44 44 H 1.09000 * 109.46805 * 180.02562 * 27 25 11 45 45 H 1.09003 * 109.47312 * 300.00024 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3790 2.0998 -1.1440 5 6 2.8052 3.3539 -0.9527 6 16 2.7863 3.7586 0.7047 7 6 2.1890 2.1624 1.1370 8 6 1.8995 1.7028 2.4985 9 8 1.4823 0.5747 2.6842 10 7 2.0952 2.5296 3.5448 11 6 1.8054 2.0704 4.9054 12 1 0.9422 1.4051 4.8888 13 6 3.0194 1.3191 5.4610 14 7 4.1375 2.2625 5.5977 15 6 5.3517 1.9931 5.0251 16 1 5.9985 2.8038 4.7239 17 6 5.7514 0.6778 4.8316 18 7 5.1469 -0.2956 5.4793 19 14 7.1471 0.2895 3.6524 20 1 7.6550 1.5503 3.0544 21 1 8.2445 -0.3865 4.3897 22 1 6.6507 -0.6040 2.5751 23 6 3.9279 3.5003 6.3611 24 6 2.7052 4.2304 5.7964 25 6 1.5046 3.2764 5.7983 26 1 1.3136 2.9361 6.8160 27 6 0.2716 4.0095 5.2661 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3131 1.6536 -2.1252 34 1 3.1155 4.0220 -1.7424 35 1 2.4274 3.4289 3.3967 36 1 3.2985 0.5185 4.7759 37 1 2.7759 0.8973 6.4360 38 1 5.4264 -1.2146 5.3444 39 1 3.7568 3.2583 7.4100 40 1 4.8075 4.1379 6.2720 41 1 2.4837 5.1006 6.4143 42 1 2.9126 4.5515 4.7757 43 1 -0.5830 3.3328 5.2691 44 1 0.0574 4.8688 5.9016 45 1 0.4622 4.3495 4.2481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968678026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:39 Heat of formation + Delta-G solvation = 5.202775 kcal Electronic energy + Delta-G solvation = -26605.976656 eV Core-core repulsion = 23136.153454 eV Total energy + Delta-G solvation = -3469.823202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.74661 -38.39401 -36.99822 -34.11726 -32.89383 -32.46715 -31.01678 -29.89603 -28.50757 -27.25416 -25.17490 -24.01412 -22.43503 -22.19556 -21.19621 -21.07142 -18.82091 -18.55431 -17.87794 -16.64354 -15.85476 -15.23739 -14.98021 -14.77969 -14.35096 -13.96270 -13.83447 -13.70932 -13.51785 -13.36887 -13.24130 -13.00012 -12.66103 -12.54980 -12.23293 -11.91952 -11.75619 -11.56918 -11.40279 -11.32175 -11.08114 -10.89509 -10.82457 -10.71444 -10.54320 -10.48952 -10.18396 -9.90931 -9.67032 -9.48838 -9.28295 -8.69847 -8.43330 -8.33707 -8.28333 -6.61696 -5.74069 -3.16897 0.71746 1.64123 2.02719 2.55904 3.40042 3.47823 3.49176 3.62511 3.83271 4.53032 4.90005 5.13453 5.21298 5.24796 5.28487 5.34890 5.38338 5.45292 5.53666 5.57907 5.64755 5.82071 5.88299 5.91038 5.93894 6.01651 6.12228 6.15757 6.22258 6.30036 6.37404 6.39292 6.45136 6.53491 6.54372 6.65836 6.73004 6.77332 6.89816 7.01319 7.39654 7.70274 7.84045 8.09632 8.49734 8.77738 9.24632 9.88762 10.44420 11.33819 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.006280 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.073512 B = 4457.425464 C = 5567.938044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.031 4.031 4 C -0.144 4.144 5 C -0.240 4.240 6 S 0.191 5.809 7 C -0.249 4.249 8 C 0.588 3.412 9 O -0.529 6.529 10 N -0.694 5.694 11 C 0.127 3.873 12 H 0.078 0.922 13 C 0.160 3.840 14 N -0.587 5.587 15 C -0.252 4.252 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.897 5.897 19 Si 0.894 3.106 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.142 3.858 24 C -0.130 4.130 25 C -0.095 4.095 26 H 0.079 0.921 27 C -0.144 4.144 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.165 0.835 35 H 0.391 0.609 36 H 0.098 0.902 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.018 0.982 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 8.983 -9.295 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 C -0.046 4.046 4 C -0.176 4.176 5 C -0.378 4.378 6 S 0.460 5.540 7 C -0.369 4.369 8 C 0.373 3.627 9 O -0.408 6.408 10 N -0.344 5.344 11 C 0.022 3.978 12 H 0.096 0.904 13 C 0.033 3.967 14 N -0.309 5.309 15 C -0.381 4.381 16 H 0.081 0.919 17 C -0.192 4.192 18 N -0.541 5.541 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.016 3.984 24 C -0.169 4.169 25 C -0.114 4.114 26 H 0.097 0.903 27 C -0.202 4.202 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.226 0.774 36 H 0.116 0.884 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.231 9.360 -8.305 15.550 hybrid contribution 0.764 -0.998 -1.693 2.109 sum -8.467 8.362 -9.998 15.543 Atomic orbital electron populations 1.21580 0.94574 1.01479 1.01463 1.20391 0.96257 0.90758 1.03661 1.19475 0.97187 0.97447 0.90463 1.19873 1.03927 0.94242 0.99511 1.25159 1.09156 1.01582 1.01856 1.82998 1.60530 1.11931 0.98552 1.24624 1.15042 0.99123 0.98114 1.16782 0.78198 0.85156 0.82569 1.90761 1.46661 1.18424 1.84966 1.45712 1.66099 1.16180 1.06360 1.21815 1.00372 0.95548 0.80097 0.90431 1.21210 0.84288 0.92373 0.98818 1.43969 1.08763 1.19014 1.59180 1.19100 0.94838 0.91165 1.33035 0.91892 1.24994 0.98134 0.96633 0.99402 1.70006 1.43403 0.99312 1.41348 0.86358 0.81971 0.78136 0.81167 1.20284 1.21736 1.21529 1.20927 0.94679 0.89196 0.93640 1.22143 0.96628 0.97438 1.00692 1.21376 0.94726 0.95712 0.99547 0.90310 1.21853 0.97728 0.99898 1.00713 0.93611 0.92578 0.92168 0.91720 0.88379 0.84225 0.81785 0.77360 0.88440 0.95615 0.93691 0.96406 0.92834 0.92661 0.92889 0.93048 0.93095 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.78 37.16 0.36 -1.42 16 2 C -0.07 -1.08 5.50 -27.88 -0.15 -1.23 16 3 C -0.03 -0.48 5.16 -105.48 -0.54 -1.03 16 4 C -0.14 -1.84 9.96 -41.41 -0.41 -2.26 16 5 C -0.24 -2.85 10.92 29.18 0.32 -2.53 16 6 S 0.19 2.58 22.16 -107.50 -2.38 0.19 16 7 C -0.25 -4.21 6.45 -36.79 -0.24 -4.45 16 8 C 0.59 11.49 7.74 -12.89 -0.10 11.39 16 9 O -0.53 -11.66 13.38 5.19 0.07 -11.59 16 10 N -0.69 -12.74 4.25 -55.03 -0.23 -12.98 16 11 C 0.13 2.43 2.24 -67.81 -0.15 2.27 16 12 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 13 C 0.16 3.82 4.90 -3.70 -0.02 3.80 16 14 N -0.59 -14.17 2.91 -172.31 -0.50 -14.68 16 15 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 16 H 0.06 1.69 7.88 -52.49 -0.41 1.27 16 17 C 0.01 0.21 4.92 -17.43 -0.09 0.13 16 18 N -0.90 -26.55 11.20 55.49 0.62 -25.93 16 19 Si 0.89 22.36 29.59 -169.99 -5.03 17.33 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 23 C 0.14 2.82 6.50 -3.71 -0.02 2.80 16 24 C -0.13 -2.05 5.23 -26.45 -0.14 -2.19 16 25 C -0.09 -1.48 2.48 -90.42 -0.22 -1.70 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.91 7.60 -51.93 -0.39 0.52 16 31 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.10 1.79 6.33 -51.93 -0.33 1.46 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.39 6.63 5.75 -40.82 -0.23 6.40 16 36 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.84 6.41 -51.93 -0.33 0.51 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -30.98 365.98 -10.16 -41.14 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.00 Total: 5.90 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.22 Total: -4.91 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.11 Total: -53.58 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.38 Total: 0.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.98 -10.16 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968678026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.342 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds