Wall clock time and date at job start Tue Mar 31 2020 13:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47123 * 2 1 4 4 C 1.37473 * 123.34854 * 264.97836 * 3 2 1 5 5 C 1.33823 * 115.10243 * 180.02562 * 4 3 2 6 6 S 1.70617 * 110.95179 * 359.72655 * 5 4 3 7 7 C 1.36648 * 123.35719 * 84.99673 * 3 2 1 8 8 C 1.46582 * 125.45266 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00416 * 359.97438 * 8 7 3 10 10 N 1.34783 * 119.99799 * 179.97438 * 8 7 3 11 11 C 1.46497 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.50206 * 324.94017 * 11 10 8 13 13 C 1.53202 * 109.49589 * 85.00370 * 11 10 8 14 14 N 1.46929 * 108.77455 * 65.31453 * 13 11 10 15 15 C 1.36930 * 120.63078 * 233.58823 * 14 13 11 16 16 H 1.07996 * 120.00049 * 151.85197 * 15 14 13 17 17 C 1.38816 * 120.00324 * 331.84993 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.06571 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.06593 * 17 15 14 20 20 H 1.48500 * 109.46960 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47338 * 119.99948 * 19 17 15 22 22 H 1.48503 * 109.47085 * 239.99957 * 19 17 15 23 23 C 1.46924 * 118.73622 * 53.61050 * 14 13 11 24 24 C 1.53194 * 108.89447 * 306.31812 * 23 14 13 25 25 C 1.53036 * 109.50038 * 204.83815 * 11 10 8 26 26 H 1.09000 * 109.46285 * 181.40842 * 25 11 10 27 27 C 1.53003 * 109.45564 * 61.43706 * 25 11 10 28 28 H 1.09003 * 109.46955 * 59.99656 * 1 2 3 29 29 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46567 * 300.00103 * 1 2 3 31 31 H 1.08998 * 109.47234 * 239.99791 * 2 1 3 32 32 H 1.09000 * 109.47199 * 119.99622 * 2 1 3 33 33 H 1.07999 * 122.45401 * 359.97438 * 4 3 2 34 34 H 1.07993 * 124.52259 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99697 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.58325 * 305.52895 * 13 11 10 37 37 H 1.08995 * 109.70381 * 185.17083 * 13 11 10 38 38 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.59145 * 66.17901 * 23 14 13 40 40 H 1.09001 * 109.58665 * 186.46252 * 23 14 13 41 41 H 1.08999 * 109.49595 * 174.66017 * 24 23 14 42 42 H 1.08997 * 109.49661 * 294.75715 * 24 23 14 43 43 H 1.09000 * 109.47109 * 60.00027 * 27 25 11 44 44 H 1.09000 * 109.46805 * 180.02562 * 27 25 11 45 45 H 1.09003 * 109.47312 * 300.00024 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3790 2.0998 -1.1440 5 6 2.8052 3.3539 -0.9527 6 16 2.7863 3.7586 0.7047 7 6 2.1890 2.1624 1.1370 8 6 1.8995 1.7028 2.4985 9 8 1.4823 0.5747 2.6842 10 7 2.0952 2.5296 3.5448 11 6 1.8054 2.0704 4.9054 12 1 0.9422 1.4051 4.8888 13 6 3.0194 1.3191 5.4610 14 7 4.1375 2.2625 5.5977 15 6 5.3517 1.9931 5.0251 16 1 5.9985 2.8038 4.7239 17 6 5.7514 0.6778 4.8316 18 7 5.1469 -0.2956 5.4793 19 14 7.1471 0.2895 3.6524 20 1 7.6550 1.5503 3.0544 21 1 8.2445 -0.3865 4.3897 22 1 6.6507 -0.6040 2.5751 23 6 3.9279 3.5003 6.3611 24 6 2.7052 4.2304 5.7964 25 6 1.5046 3.2764 5.7983 26 1 1.3136 2.9361 6.8160 27 6 0.2716 4.0095 5.2661 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.3131 1.6536 -2.1252 34 1 3.1155 4.0220 -1.7424 35 1 2.4274 3.4289 3.3967 36 1 3.2985 0.5185 4.7759 37 1 2.7759 0.8973 6.4360 38 1 5.4264 -1.2146 5.3444 39 1 3.7568 3.2583 7.4100 40 1 4.8075 4.1379 6.2720 41 1 2.4837 5.1006 6.4143 42 1 2.9126 4.5515 4.7757 43 1 -0.5830 3.3328 5.2691 44 1 0.0574 4.8688 5.9016 45 1 0.4622 4.3495 4.2481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968678026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:38 Heat of formation + Delta-G solvation = -12.782985 kcal Electronic energy + Delta-G solvation = -26606.756577 eV Core-core repulsion = 23136.153454 eV Total energy + Delta-G solvation = -3470.603123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20553 -39.70360 -38.40858 -35.92325 -34.38435 -33.62801 -32.84572 -31.38427 -29.83788 -28.87038 -26.41637 -25.73661 -23.97546 -23.30403 -22.78083 -22.48722 -20.38893 -19.86745 -19.11590 -18.50435 -17.15169 -16.80910 -16.68525 -16.04481 -15.90226 -15.66747 -15.18187 -15.02832 -14.89552 -14.74415 -14.62749 -14.41236 -14.10494 -13.82214 -13.60885 -13.25638 -13.14160 -13.00587 -12.84279 -12.76718 -12.63745 -12.49919 -12.39378 -12.20885 -11.98876 -11.93748 -11.65948 -11.57970 -11.30295 -11.07566 -10.80634 -10.54922 -10.05376 -9.66598 -9.37835 -8.64156 -7.86742 -5.31210 -0.41420 0.55316 0.98549 1.37057 1.40827 1.47091 1.48823 2.19492 2.41520 2.47678 3.29292 3.68216 3.82486 3.90497 3.95722 3.97640 4.12123 4.18211 4.33817 4.47133 4.51012 4.53551 4.66058 4.70616 4.76886 4.79476 4.87950 4.91291 4.94837 5.07823 5.08375 5.11162 5.15991 5.22773 5.25385 5.31649 5.42964 5.45297 5.50052 5.56196 5.60530 5.71975 5.73281 6.39121 6.63659 7.14233 7.32027 7.87649 8.38412 9.18177 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.006280 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.073512 B = 4457.425464 C = 5567.938044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.032 4.032 4 C -0.156 4.156 5 C -0.216 4.216 6 S 0.215 5.785 7 C -0.301 4.301 8 C 0.579 3.421 9 O -0.569 6.569 10 N -0.688 5.688 11 C 0.138 3.862 12 H 0.065 0.935 13 C 0.171 3.829 14 N -0.600 5.600 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.050 4.050 18 N -0.932 5.932 19 Si 0.949 3.051 20 H -0.259 1.259 21 H -0.291 1.291 22 H -0.303 1.303 23 C 0.135 3.865 24 C -0.117 4.117 25 C -0.089 4.089 26 H 0.080 0.920 27 C -0.135 4.135 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.170 0.830 34 H 0.205 0.795 35 H 0.400 0.600 36 H 0.048 0.952 37 H -0.002 1.002 38 H 0.244 0.756 39 H 0.015 0.985 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 12.445 -11.555 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.113 4.113 3 C -0.048 4.048 4 C -0.186 4.186 5 C -0.353 4.353 6 S 0.484 5.516 7 C -0.421 4.421 8 C 0.366 3.634 9 O -0.451 6.451 10 N -0.338 5.338 11 C 0.032 3.968 12 H 0.083 0.917 13 C 0.044 3.956 14 N -0.323 5.323 15 C -0.376 4.376 16 H 0.087 0.913 17 C -0.246 4.246 18 N -0.579 5.579 19 Si 0.778 3.222 20 H -0.183 1.183 21 H -0.218 1.218 22 H -0.231 1.231 23 C 0.010 3.990 24 C -0.156 4.156 25 C -0.108 4.108 26 H 0.098 0.902 27 C -0.192 4.192 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.188 0.812 34 H 0.222 0.778 35 H 0.236 0.764 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.536 12.896 -10.558 19.202 hybrid contribution 0.876 -2.040 -1.003 2.436 sum -8.660 10.856 -11.560 18.069 Atomic orbital electron populations 1.21503 0.93408 1.02035 1.01283 1.20382 0.97337 0.90961 1.02665 1.19799 0.96240 0.97431 0.91281 1.20081 1.04252 0.94590 0.99708 1.25678 1.06353 1.01556 1.01724 1.82819 1.59736 1.09273 0.99789 1.24503 1.18629 1.01998 0.96948 1.17310 0.77374 0.84695 0.83980 1.90731 1.48414 1.20074 1.85886 1.45604 1.66035 1.16379 1.05760 1.21504 0.97227 0.96833 0.81246 0.91662 1.20875 0.86344 0.92001 0.96376 1.44159 1.07974 1.20211 1.59939 1.19429 0.95426 0.91069 1.31689 0.91311 1.25688 1.00699 0.96883 1.01308 1.70173 1.45300 0.99087 1.43329 0.85467 0.79553 0.78178 0.79010 1.18271 1.21760 1.23066 1.21151 0.97030 0.87589 0.93197 1.22028 0.94210 0.97924 1.01399 1.21345 0.96358 0.94311 0.98744 0.90216 1.21762 0.95840 1.00397 1.01229 0.91147 0.91731 0.94751 0.89292 0.92644 0.81248 0.77841 0.76382 0.93370 0.98361 0.94691 0.96695 0.92409 0.88756 0.92435 0.93088 0.90275 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 9.78 71.98 0.70 -2.64 16 2 C -0.07 -2.26 5.50 29.85 0.16 -2.10 16 3 C -0.03 -0.96 5.16 -20.42 -0.11 -1.06 16 4 C -0.16 -3.49 9.96 21.08 0.21 -3.28 16 5 C -0.22 -4.22 10.92 66.82 0.73 -3.49 16 6 S 0.22 5.28 22.16 -56.49 -1.25 4.03 16 7 C -0.30 -10.18 6.45 24.08 0.16 -10.03 16 8 C 0.58 23.65 7.74 86.42 0.67 24.32 16 9 O -0.57 -27.09 13.38 -4.35 -0.06 -27.15 16 10 N -0.69 -25.74 4.25 -446.21 -1.90 -27.63 16 11 C 0.14 5.43 2.24 45.07 0.10 5.54 16 12 H 0.07 2.71 7.58 -2.39 -0.02 2.70 16 13 C 0.17 8.66 4.90 86.37 0.42 9.08 16 14 N -0.60 -29.58 2.91 -699.08 -2.04 -31.61 16 15 C -0.25 -13.52 9.58 84.04 0.81 -12.71 16 16 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 17 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 18 N -0.93 -58.35 11.20 21.65 0.24 -58.11 16 19 Si 0.95 47.22 29.59 68.60 2.03 49.25 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 23 C 0.14 5.25 6.50 86.36 0.56 5.81 16 24 C -0.12 -3.38 5.23 30.78 0.16 -3.22 16 25 C -0.09 -2.65 2.48 -10.66 -0.03 -2.68 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 C -0.13 -3.12 9.05 71.98 0.65 -2.46 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.08 7.60 -2.38 -0.02 1.06 16 31 H 0.09 2.20 8.12 -2.39 -0.02 2.18 16 32 H 0.05 2.18 6.33 -2.39 -0.02 2.16 16 33 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.40 13.28 5.75 -92.71 -0.53 12.75 16 36 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 37 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 1.64 6.41 -2.39 -0.02 1.63 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.21 7.54 -2.39 -0.02 1.19 16 Total: -1.00 -73.30 365.98 3.11 -70.20 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.45 Total: 22.48 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.62 Total: -1.45 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -3.69 Total: -117.36 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.25 Total: 4.03 kcal Total: -73.30 3.11 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968678026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.412 kcal (2) G-P(sol) polarization free energy of solvation -73.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds