Wall clock time and date at job start Tue Mar 31 2020 13:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47717 * 2 1 4 4 C 1.53006 * 109.46863 * 120.00180 * 2 1 3 5 5 C 1.50706 * 109.47022 * 174.99794 * 4 2 1 6 6 C 1.33811 * 124.52486 * 89.99450 * 5 4 2 7 7 C 1.37470 * 115.10278 * 179.97438 * 6 5 4 8 8 C 1.36641 * 113.29721 * 0.02562 * 7 6 5 9 9 C 1.46582 * 125.45741 * 179.97438 * 8 7 6 10 10 O 1.21698 * 120.00442 * 354.49809 * 9 8 7 11 11 N 1.34777 * 119.99992 * 174.77441 * 9 8 7 12 12 C 1.47420 * 125.65014 * 184.29261 * 11 9 8 13 13 C 1.55133 * 104.72495 * 155.82071 * 12 11 9 14 14 C 1.55157 * 101.48703 * 37.29233 * 13 12 11 15 15 H 1.08998 * 110.72006 * 82.69872 * 14 13 12 16 16 N 1.46493 * 110.71959 * 205.97388 * 14 13 12 17 17 C 1.36941 * 120.00017 * 199.97936 * 16 14 13 18 18 H 1.08000 * 119.99784 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99877 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99674 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47234 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47371 * 119.99685 * 21 19 17 24 24 H 1.48503 * 109.47427 * 239.99904 * 21 19 17 25 25 C 1.47025 * 125.64712 * 4.60029 * 11 9 8 26 26 S 1.70623 * 124.52144 * 270.26770 * 5 4 2 27 27 H 1.09002 * 109.46662 * 300.00154 * 1 2 3 28 28 H 1.09001 * 109.47080 * 59.99961 * 1 2 3 29 29 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47156 * 239.99261 * 2 1 3 31 31 H 1.09001 * 109.46877 * 300.00163 * 3 2 1 32 32 H 1.09003 * 109.47410 * 59.99417 * 3 2 1 33 33 H 1.08996 * 109.47678 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47477 * 54.99657 * 4 2 1 35 35 H 1.09001 * 109.46688 * 294.99151 * 4 2 1 36 36 H 1.08003 * 122.44817 * 0.02562 * 6 5 4 37 37 H 1.08006 * 123.34752 * 179.97438 * 7 6 5 38 38 H 1.09010 * 110.36721 * 274.74381 * 12 11 9 39 39 H 1.09000 * 110.36913 * 37.06613 * 12 11 9 40 40 H 1.08998 * 111.18482 * 279.18636 * 13 12 11 41 41 H 1.08998 * 110.90586 * 155.27450 * 13 12 11 42 42 H 0.97002 * 120.00487 * 19.97145 * 16 14 13 43 43 H 0.96997 * 120.00013 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.88528 * 300.43903 * 25 11 9 45 45 H 1.09000 * 109.88462 * 61.45243 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8295 1.1889 6 6 4.3884 0.0832 1.6799 7 6 5.7215 -0.2119 1.5196 8 6 5.9390 -1.3991 0.8791 9 6 7.2531 -1.9700 0.5696 10 8 8.2633 -1.3310 0.7980 11 7 7.3424 -3.2004 0.0268 12 6 8.5939 -3.9283 -0.2508 13 6 8.1864 -5.4251 -0.2572 14 6 6.7888 -5.3620 -0.9281 15 1 6.8832 -5.3310 -2.0136 16 7 5.9617 -6.4966 -0.5105 17 6 4.8798 -6.8690 -1.2630 18 1 4.6362 -6.3258 -2.1641 19 6 4.0958 -7.9438 -0.8669 20 7 4.3923 -8.6053 0.2316 21 14 2.6196 -8.4512 -1.8930 22 1 2.5025 -7.5530 -3.0699 23 1 2.7951 -9.8518 -2.3542 24 1 1.3871 -8.3517 -1.0705 25 6 6.2079 -4.0364 -0.3925 26 16 4.3900 -2.1291 0.4796 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6053 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 4.0491 0.9853 2.1672 37 1 6.5176 0.4312 1.8649 38 1 8.9945 -3.6377 -1.2221 39 1 9.3256 -3.7381 0.5345 40 1 8.1156 -5.8185 0.7569 41 1 8.8809 -6.0147 -0.8557 42 1 6.1803 -6.9843 0.2990 43 1 3.8446 -9.3566 0.5081 44 1 5.5580 -4.2340 0.4599 45 1 5.6456 -3.5313 -1.1779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968940045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:18 Heat of formation + Delta-G solvation = -5.572636 kcal Electronic energy + Delta-G solvation = -24927.542626 eV Core-core repulsion = 21457.252167 eV Total energy + Delta-G solvation = -3470.290459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79190 -38.45003 -37.23012 -35.85947 -34.11900 -31.74544 -30.84007 -29.73054 -27.55646 -27.42317 -26.84886 -24.31946 -23.53877 -22.51625 -20.66416 -20.42098 -20.20320 -18.32501 -17.76245 -17.27984 -16.14731 -15.78718 -15.76911 -15.00521 -14.77855 -14.61610 -14.40340 -13.92388 -13.54912 -13.37756 -13.27696 -12.91344 -12.82160 -12.60860 -12.42971 -12.40711 -12.17972 -12.05090 -11.74179 -11.60112 -11.28186 -11.15586 -11.02913 -10.96657 -10.88947 -10.83465 -10.41218 -10.34002 -10.10512 -9.92140 -9.78124 -9.07595 -8.70659 -8.48004 -8.23249 -7.16895 -5.90704 -3.22234 0.62910 1.62704 2.07871 2.45813 3.16660 3.35065 3.38045 3.41674 3.43447 4.46410 4.52722 4.66427 4.69696 4.74166 5.04227 5.07817 5.15888 5.30823 5.31532 5.37091 5.44055 5.46090 5.51141 5.54175 5.59482 5.63748 5.69069 5.69392 5.78851 5.93159 5.94852 6.02398 6.04224 6.09737 6.13539 6.15200 6.23382 6.27061 6.41140 6.44882 6.51680 6.75399 7.58431 7.69871 8.25763 8.29585 9.38752 9.91220 10.26360 11.31136 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.004665 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.019332 B = 6001.175766 C = 8644.959413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.048 4.048 5 C -0.215 4.215 6 C -0.157 4.157 7 C -0.060 4.060 8 C -0.271 4.271 9 C 0.601 3.399 10 O -0.547 6.547 11 N -0.610 5.610 12 C 0.113 3.887 13 C -0.141 4.141 14 C 0.178 3.822 15 H 0.069 0.931 16 N -0.712 5.712 17 C -0.251 4.251 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.927 5.927 21 Si 0.906 3.094 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.059 3.941 26 S 0.252 5.748 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.082 0.918 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 16.526 0.807 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.087 4.087 5 C -0.334 4.334 6 C -0.188 4.188 7 C -0.094 4.094 8 C -0.391 4.391 9 C 0.390 3.610 10 O -0.428 6.428 11 N -0.343 5.343 12 C -0.010 4.010 13 C -0.179 4.179 14 C 0.065 3.935 15 H 0.087 0.913 16 N -0.352 5.352 17 C -0.382 4.382 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.069 4.069 26 S 0.523 5.477 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.223 0.777 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.369 15.515 0.101 15.695 hybrid contribution -0.531 0.942 0.596 1.235 sum -2.899 16.457 0.697 16.725 Atomic orbital electron populations 1.21845 0.94787 1.02044 1.01810 1.21130 0.95673 0.96656 0.97735 1.21901 1.01811 0.95527 1.01435 1.20282 0.87684 1.01706 0.98984 1.24696 1.01202 1.01535 1.05977 1.19828 0.91828 1.01386 1.05720 1.20614 0.96979 0.94762 0.97004 1.24556 0.97183 1.02800 1.14600 1.16630 0.87138 0.79989 0.77205 1.90779 1.36529 1.60002 1.55451 1.48395 1.09596 1.15625 1.60687 1.22243 0.86505 0.91225 1.01024 1.23130 0.98246 0.94128 1.02441 1.21137 0.88987 0.86121 0.97247 0.91308 1.42405 1.31039 1.32127 1.29602 1.19289 1.03104 1.11079 1.04701 0.90816 1.24760 0.99508 0.98325 0.97643 1.69665 1.40804 1.22856 1.24130 0.86153 0.82573 0.78270 0.79382 1.20371 1.21713 1.21723 1.23536 0.88786 0.94292 1.00236 1.84126 0.93638 1.17825 1.52160 0.92651 0.92505 0.92394 0.90861 0.92870 0.92805 0.92024 0.90449 0.90158 0.84623 0.83547 0.91388 0.90679 0.90382 0.89741 0.77743 0.93318 0.90009 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.85 2.91 -90.62 -0.26 -1.11 16 3 C -0.15 -1.28 8.87 37.15 0.33 -0.95 16 4 C -0.05 -0.47 5.12 -27.88 -0.14 -0.62 16 5 C -0.21 -2.59 5.05 -35.86 -0.18 -2.77 16 6 C -0.16 -1.86 8.50 -41.42 -0.35 -2.21 16 7 C -0.06 -0.82 10.02 -40.44 -0.41 -1.23 16 8 C -0.27 -4.24 6.38 -36.80 -0.23 -4.48 16 9 C 0.60 10.65 7.81 -12.90 -0.10 10.54 16 10 O -0.55 -10.88 17.14 5.19 0.09 -10.79 16 11 N -0.61 -10.18 3.32 -171.95 -0.57 -10.75 16 12 C 0.11 1.66 6.90 -2.41 -0.02 1.64 16 13 C -0.14 -2.13 6.71 -24.46 -0.16 -2.30 16 14 C 0.18 3.22 3.59 -66.10 -0.24 2.99 16 15 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 16 N -0.71 -16.30 5.18 -51.65 -0.27 -16.57 16 17 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 20 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 21 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.06 1.01 4.94 -3.06 -0.02 1.00 16 26 S 0.25 3.59 18.41 -107.50 -1.98 1.61 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.15 1.90 8.06 -52.48 -0.42 1.47 16 38 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.39 9.54 7.71 -40.82 -0.31 9.22 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.08 1.53 6.58 -51.92 -0.34 1.19 16 45 H 0.06 1.07 7.12 -51.93 -0.37 0.70 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -29.67 375.12 -10.30 -39.97 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.23 Total: 7.65 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.69 Total: -7.13 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.11 Total: -53.04 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.98 Total: 1.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.67 -10.30 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968940045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.396 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds