Wall clock time and date at job start Tue Mar 31 2020 13:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47717 * 2 1 4 4 C 1.53006 * 109.46863 * 120.00180 * 2 1 3 5 5 C 1.50706 * 109.47022 * 174.99794 * 4 2 1 6 6 C 1.33811 * 124.52486 * 89.99450 * 5 4 2 7 7 C 1.37470 * 115.10278 * 179.97438 * 6 5 4 8 8 C 1.36641 * 113.29721 * 0.02562 * 7 6 5 9 9 C 1.46582 * 125.45741 * 179.97438 * 8 7 6 10 10 O 1.21698 * 120.00442 * 354.49809 * 9 8 7 11 11 N 1.34777 * 119.99992 * 174.77441 * 9 8 7 12 12 C 1.47420 * 125.65014 * 184.29261 * 11 9 8 13 13 C 1.55133 * 104.72495 * 155.82071 * 12 11 9 14 14 C 1.55157 * 101.48703 * 37.29233 * 13 12 11 15 15 H 1.08998 * 110.72006 * 82.69872 * 14 13 12 16 16 N 1.46493 * 110.71959 * 205.97388 * 14 13 12 17 17 C 1.36941 * 120.00017 * 199.97936 * 16 14 13 18 18 H 1.08000 * 119.99784 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99877 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99674 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47234 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47371 * 119.99685 * 21 19 17 24 24 H 1.48503 * 109.47427 * 239.99904 * 21 19 17 25 25 C 1.47025 * 125.64712 * 4.60029 * 11 9 8 26 26 S 1.70623 * 124.52144 * 270.26770 * 5 4 2 27 27 H 1.09002 * 109.46662 * 300.00154 * 1 2 3 28 28 H 1.09001 * 109.47080 * 59.99961 * 1 2 3 29 29 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47156 * 239.99261 * 2 1 3 31 31 H 1.09001 * 109.46877 * 300.00163 * 3 2 1 32 32 H 1.09003 * 109.47410 * 59.99417 * 3 2 1 33 33 H 1.08996 * 109.47678 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47477 * 54.99657 * 4 2 1 35 35 H 1.09001 * 109.46688 * 294.99151 * 4 2 1 36 36 H 1.08003 * 122.44817 * 0.02562 * 6 5 4 37 37 H 1.08006 * 123.34752 * 179.97438 * 7 6 5 38 38 H 1.09010 * 110.36721 * 274.74381 * 12 11 9 39 39 H 1.09000 * 110.36913 * 37.06613 * 12 11 9 40 40 H 1.08998 * 111.18482 * 279.18636 * 13 12 11 41 41 H 1.08998 * 110.90586 * 155.27450 * 13 12 11 42 42 H 0.97002 * 120.00487 * 19.97145 * 16 14 13 43 43 H 0.96997 * 120.00013 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.88528 * 300.43903 * 25 11 9 45 45 H 1.09000 * 109.88462 * 61.45243 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8295 1.1889 6 6 4.3884 0.0832 1.6799 7 6 5.7215 -0.2119 1.5196 8 6 5.9390 -1.3991 0.8791 9 6 7.2531 -1.9700 0.5696 10 8 8.2633 -1.3310 0.7980 11 7 7.3424 -3.2004 0.0268 12 6 8.5939 -3.9283 -0.2508 13 6 8.1864 -5.4251 -0.2572 14 6 6.7888 -5.3620 -0.9281 15 1 6.8832 -5.3310 -2.0136 16 7 5.9617 -6.4966 -0.5105 17 6 4.8798 -6.8690 -1.2630 18 1 4.6362 -6.3258 -2.1641 19 6 4.0958 -7.9438 -0.8669 20 7 4.3923 -8.6053 0.2316 21 14 2.6196 -8.4512 -1.8930 22 1 2.5025 -7.5530 -3.0699 23 1 2.7951 -9.8518 -2.3542 24 1 1.3871 -8.3517 -1.0705 25 6 6.2079 -4.0364 -0.3925 26 16 4.3900 -2.1291 0.4796 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6053 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 4.0491 0.9853 2.1672 37 1 6.5176 0.4312 1.8649 38 1 8.9945 -3.6377 -1.2221 39 1 9.3256 -3.7381 0.5345 40 1 8.1156 -5.8185 0.7569 41 1 8.8809 -6.0147 -0.8557 42 1 6.1803 -6.9843 0.2990 43 1 3.8446 -9.3566 0.5081 44 1 5.5580 -4.2340 0.4599 45 1 5.6456 -3.5313 -1.1779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968940045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:17 Heat of formation + Delta-G solvation = -21.376627 kcal Electronic energy + Delta-G solvation = -24928.227939 eV Core-core repulsion = 21457.252167 eV Total energy + Delta-G solvation = -3470.975772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13429 -39.49324 -38.55622 -36.74764 -35.87310 -33.37785 -32.11214 -30.97876 -29.10551 -28.17430 -27.77989 -25.93427 -24.80684 -23.77374 -21.96771 -21.65898 -21.07609 -19.45650 -19.25076 -18.93338 -17.51552 -17.11333 -16.86973 -16.41441 -15.87876 -15.72836 -15.35296 -15.30795 -15.19534 -14.82227 -14.45890 -14.18155 -13.81147 -13.68544 -13.58100 -13.45070 -13.20394 -13.12841 -12.99803 -12.86310 -12.58788 -12.54009 -12.44669 -12.07093 -11.95870 -11.76945 -11.74287 -11.66024 -11.63561 -11.45121 -11.23576 -10.94436 -9.95477 -9.55266 -9.44009 -9.07905 -7.93456 -5.23906 -0.48232 0.51779 1.01466 1.37190 1.50664 1.52199 1.60969 1.87564 2.12063 2.57773 3.35884 3.39474 3.68444 3.83060 3.87400 3.88213 3.94286 4.03378 4.22680 4.27940 4.31214 4.40172 4.50728 4.52689 4.66205 4.68176 4.72221 4.78134 4.83802 4.92132 4.93774 4.99289 5.04393 5.08541 5.11169 5.16354 5.23460 5.28556 5.35803 5.42511 5.45488 5.49442 5.56562 6.26715 6.34493 6.94268 7.35340 8.04813 8.29511 9.29571 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.004665 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.019332 B = 6001.175766 C = 8644.959413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.049 4.049 5 C -0.197 4.197 6 C -0.155 4.155 7 C -0.050 4.050 8 C -0.303 4.303 9 C 0.597 3.403 10 O -0.576 6.576 11 N -0.612 5.612 12 C 0.113 3.887 13 C -0.128 4.128 14 C 0.171 3.829 15 H 0.076 0.924 16 N -0.723 5.723 17 C -0.242 4.242 18 H 0.082 0.918 19 C -0.065 4.065 20 N -0.966 5.966 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.295 1.295 25 C 0.074 3.926 26 S 0.221 5.779 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.066 0.934 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 18.359 0.387 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.088 4.088 5 C -0.316 4.316 6 C -0.184 4.184 7 C -0.085 4.085 8 C -0.423 4.423 9 C 0.388 3.612 10 O -0.460 6.460 11 N -0.344 5.344 12 C -0.009 4.009 13 C -0.166 4.166 14 C 0.060 3.940 15 H 0.094 0.906 16 N -0.361 5.361 17 C -0.373 4.373 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.616 5.616 21 Si 0.794 3.206 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.223 1.223 25 C -0.053 4.053 26 S 0.491 5.509 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.246 17.378 -0.358 17.682 hybrid contribution -0.246 0.499 0.742 0.928 sum -3.491 17.877 0.385 18.219 Atomic orbital electron populations 1.21824 0.93658 1.02075 1.02683 1.21115 0.96582 0.96838 0.96553 1.21884 1.01051 0.95115 1.02415 1.20415 0.85942 1.02094 1.00317 1.24943 1.02306 1.00064 1.04329 1.20056 0.90764 1.02220 1.05403 1.20890 0.98169 0.93898 0.95505 1.24479 0.96702 1.04075 1.17045 1.16920 0.87631 0.79947 0.76704 1.90748 1.37630 1.60696 1.56883 1.48439 1.09998 1.15499 1.60453 1.22368 0.85940 0.90455 1.02160 1.23047 0.96778 0.94844 1.01961 1.21340 0.89908 0.84921 0.97854 0.90576 1.42522 1.31198 1.33388 1.29042 1.19656 1.03056 1.10122 1.04481 0.90035 1.25465 1.02327 0.99111 0.98920 1.69807 1.42100 1.23647 1.26045 0.85214 0.79422 0.77611 0.78376 1.18747 1.22363 1.22282 1.23189 0.88689 0.93799 0.99664 1.84163 0.93862 1.19474 1.53372 0.91484 0.91954 0.92816 0.92377 0.92370 0.91436 0.93120 0.90793 0.88100 0.81652 0.82908 0.89552 0.90310 0.91284 0.87602 0.79038 0.94026 0.91634 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.09 -1.50 2.91 -10.79 -0.03 -1.53 16 3 C -0.15 -2.15 8.87 71.98 0.64 -1.51 16 4 C -0.05 -0.86 5.12 29.85 0.15 -0.71 16 5 C -0.20 -4.43 5.05 24.68 0.12 -4.31 16 6 C -0.16 -3.32 8.50 21.08 0.18 -3.14 16 7 C -0.05 -1.32 10.02 21.71 0.22 -1.10 16 8 C -0.30 -9.42 6.38 24.07 0.15 -9.26 16 9 C 0.60 21.14 7.81 86.42 0.67 21.82 16 10 O -0.58 -22.93 17.14 -4.34 -0.07 -23.01 16 11 N -0.61 -20.21 3.32 -816.13 -2.71 -22.92 16 12 C 0.11 3.19 6.90 86.93 0.60 3.79 16 13 C -0.13 -3.74 6.71 32.06 0.22 -3.53 16 14 C 0.17 6.08 3.59 46.18 0.17 6.24 16 15 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 16 N -0.72 -33.18 5.18 -317.34 -1.64 -34.83 16 17 C -0.24 -12.28 9.98 84.03 0.84 -11.44 16 18 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 20 N -0.97 -56.11 13.06 21.65 0.28 -55.82 16 21 Si 0.96 43.50 29.55 68.60 2.03 45.53 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 25 C 0.07 2.52 4.94 86.73 0.43 2.95 16 26 S 0.22 6.25 18.41 -56.49 -1.04 5.21 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.85 6.38 -2.39 -0.02 0.83 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 38 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.08 2.20 8.08 -2.39 -0.02 2.19 16 40 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 41 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.38 18.86 7.71 -92.71 -0.72 18.15 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.07 2.49 6.58 -2.39 -0.02 2.48 16 45 H 0.07 2.29 7.12 -2.39 -0.02 2.27 16 Total: -1.00 -63.63 375.12 2.59 -61.04 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.27 Total: 30.89 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.49 Total: -6.09 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.07 Total: -113.57 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.07 Total: -23.01 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.04 Total: 5.21 kcal Total: -63.63 2.59 -61.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968940045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.664 kcal (2) G-P(sol) polarization free energy of solvation -63.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds