Wall clock time and date at job start Tue Mar 31 2020 13:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 C 1.50703 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.33814 * 124.52793 * 89.99589 * 4 3 2 6 6 C 1.37471 * 115.10229 * 179.72402 * 5 4 3 7 7 C 1.36643 * 113.29661 * 0.45830 * 6 5 4 8 8 C 1.46590 * 125.45868 * 179.83531 * 7 6 5 9 9 O 1.21696 * 119.99658 * 359.71956 * 8 7 6 10 10 N 1.34779 * 119.99921 * 179.71404 * 8 7 6 11 11 C 1.46498 * 119.99683 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47037 * 325.00179 * 11 10 8 13 13 C 1.52997 * 109.47442 * 85.00303 * 11 10 8 14 14 C 1.53004 * 109.47052 * 205.00617 * 11 10 8 15 15 C 1.53497 * 114.20756 * 180.02562 * 14 11 10 16 16 N 1.47070 * 87.98301 * 220.34168 * 15 14 11 17 17 C 1.36932 * 136.05620 * 207.08686 * 16 15 14 18 18 H 1.08006 * 120.00205 * 7.81892 * 17 16 15 19 19 C 1.38809 * 120.00281 * 187.82655 * 17 16 15 20 20 N 1.31616 * 120.00068 * 195.17204 * 19 17 16 21 21 Si 1.86802 * 119.99918 * 15.16359 * 19 17 16 22 22 H 1.48504 * 109.47042 * 270.00682 * 21 19 17 23 23 H 1.48499 * 109.47021 * 30.00157 * 21 19 17 24 24 H 1.48492 * 109.47106 * 150.00508 * 21 19 17 25 25 C 1.47068 * 87.88415 * 27.33811 * 16 15 14 26 26 S 1.70615 * 124.51936 * 269.97081 * 4 3 2 27 27 H 1.08998 * 109.46714 * 60.00084 * 1 2 3 28 28 H 1.08997 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46935 * 300.00305 * 1 2 3 30 30 H 1.08995 * 109.47344 * 239.99944 * 2 1 3 31 31 H 1.09001 * 109.47437 * 119.99791 * 2 1 3 32 32 H 1.09000 * 109.47516 * 60.00051 * 3 2 1 33 33 H 1.09000 * 109.46792 * 299.99601 * 3 2 1 34 34 H 1.08005 * 122.44676 * 359.95696 * 5 4 3 35 35 H 1.08003 * 123.35069 * 180.27205 * 6 5 4 36 36 H 0.96997 * 120.00003 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.46904 * 59.99183 * 13 11 10 38 38 H 1.08993 * 109.47359 * 180.02562 * 13 11 10 39 39 H 1.08999 * 109.46774 * 299.99974 * 13 11 10 40 40 H 1.09005 * 113.40728 * 313.19431 * 14 11 10 41 41 H 1.08996 * 113.46841 * 105.55693 * 15 14 11 42 42 H 1.08998 * 113.51535 * 335.12668 * 15 14 11 43 43 H 0.96995 * 120.00585 * 354.89801 * 20 19 17 44 44 H 1.09005 * 113.46482 * 87.44223 * 25 16 15 45 45 H 1.09000 * 113.46807 * 217.87726 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3050 1.4426 -1.1034 6 6 5.6612 1.4486 -0.8788 7 6 5.9894 1.4434 0.4476 8 6 7.3527 1.4443 0.9863 9 8 8.3059 1.4449 0.2297 10 7 7.5505 1.4445 2.3195 11 6 8.9130 1.4460 2.8579 12 1 9.5609 0.8573 2.2084 13 6 9.4319 2.8836 2.9284 14 6 8.9075 0.8363 4.2612 15 6 10.2880 0.7848 4.9304 16 7 9.9333 -0.5481 5.4407 17 6 10.2836 -1.3165 6.5187 18 1 10.8946 -0.8977 7.3047 19 6 9.8535 -2.6337 6.6013 20 7 9.9256 -3.2789 7.7462 21 14 9.1723 -3.4904 5.0876 22 1 7.7045 -3.2763 5.0161 23 1 9.8139 -2.9304 3.8710 24 1 9.4568 -4.9454 5.1722 25 6 9.0416 -0.6952 4.2805 26 16 4.5144 1.4430 1.4047 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8821 1.4420 -2.0972 35 1 6.3944 1.4537 -1.6719 36 1 6.7907 1.4437 2.9225 37 1 8.7840 3.4723 3.5777 38 1 10.4458 2.8846 3.3285 39 1 9.4358 3.3179 1.9287 40 1 8.1157 1.2273 4.9002 41 1 10.4179 1.5298 5.7153 42 1 11.1151 0.7718 4.2207 43 1 10.3466 -2.8603 8.5132 44 1 9.5397 -1.0985 3.3987 45 1 8.1097 -1.2112 4.5118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969770009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:04 Heat of formation + Delta-G solvation = 36.443312 kcal Electronic energy + Delta-G solvation = -24323.568893 eV Core-core repulsion = 20855.100382 eV Total energy + Delta-G solvation = -3468.468511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03834 -38.78022 -38.05085 -35.29818 -34.95607 -32.46326 -31.28658 -30.18791 -27.76464 -27.15778 -25.33099 -24.31362 -23.66325 -21.93119 -21.82688 -20.68179 -19.91653 -19.01628 -18.02393 -17.45452 -16.58026 -16.05405 -15.43100 -15.24455 -15.14477 -15.03625 -14.26269 -14.09528 -13.85882 -13.71609 -13.57058 -13.26878 -13.11650 -12.85129 -12.68083 -12.27797 -12.15426 -11.91473 -11.83582 -11.80638 -11.59157 -11.48029 -11.26608 -11.02059 -10.93970 -10.71146 -10.39235 -10.11014 -9.95277 -9.48992 -9.17621 -9.11052 -8.86096 -8.81619 -8.67994 -7.17488 -6.30083 -3.22048 0.28475 1.20476 1.63213 2.17338 3.09518 3.16506 3.42117 3.50633 3.64036 4.24753 4.52033 4.59666 4.61008 4.63222 4.77858 4.89736 4.92783 5.04877 5.10419 5.12939 5.26074 5.34240 5.35954 5.43950 5.45536 5.57816 5.64319 5.65793 5.74156 5.78147 5.85439 5.85909 5.90704 6.02415 6.11743 6.17495 6.25071 6.28565 6.33651 6.40321 6.56806 6.92644 7.13936 7.44603 8.13625 8.24293 8.97962 9.51385 10.38307 11.19922 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.003157 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.041842 B = 8866.573009 C =10258.705283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.052 4.052 4 C -0.193 4.193 5 C -0.153 4.153 6 C -0.054 4.054 7 C -0.265 4.265 8 C 0.590 3.410 9 O -0.532 6.532 10 N -0.716 5.716 11 C 0.153 3.847 12 H 0.092 0.908 13 C -0.158 4.158 14 C -0.140 4.140 15 C 0.131 3.869 16 N -0.625 5.625 17 C -0.304 4.304 18 H 0.082 0.918 19 C -0.024 4.024 20 N -0.932 5.932 21 Si 1.061 2.939 22 H -0.294 1.294 23 H -0.282 1.282 24 H -0.295 1.295 25 C 0.108 3.892 26 S 0.203 5.797 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.397 0.603 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.261 0.739 44 H 0.046 0.954 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 13.321 -17.689 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.091 4.091 4 C -0.313 4.313 5 C -0.184 4.184 6 C -0.087 4.087 7 C -0.385 4.385 8 C 0.376 3.624 9 O -0.410 6.410 10 N -0.367 5.367 11 C 0.048 3.952 12 H 0.110 0.890 13 C -0.217 4.217 14 C -0.160 4.160 15 C 0.004 3.996 16 N -0.352 5.352 17 C -0.431 4.431 18 H 0.100 0.900 19 C -0.223 4.223 20 N -0.575 5.575 21 Si 0.892 3.108 22 H -0.221 1.221 23 H -0.208 1.208 24 H -0.222 1.222 25 C -0.018 4.018 26 S 0.471 5.529 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.231 0.769 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.712 11.752 -16.933 27.177 hybrid contribution 0.708 1.330 -0.805 1.708 sum -17.004 13.082 -17.738 27.838 Atomic orbital electron populations 1.21778 0.95250 1.02076 1.01917 1.21579 0.96016 0.95430 1.02975 1.20263 0.87049 0.98198 1.03559 1.24256 1.01153 1.08035 0.97818 1.19943 0.92588 1.06361 0.99532 1.20737 0.96129 0.96635 0.95215 1.24658 0.96977 1.18777 0.98111 1.16948 0.86664 0.76355 0.82452 1.90820 1.41802 1.50364 1.58018 1.46013 1.09736 1.74915 1.05999 1.21068 0.82175 0.97082 0.94841 0.88986 1.22124 1.01719 0.95932 1.01907 1.23550 1.00822 0.97709 0.93935 1.22280 0.92808 0.89508 0.94990 1.46197 1.49350 1.16711 1.22991 1.20135 1.33752 0.94047 0.95125 0.90037 1.25759 1.00395 0.93105 1.03019 1.70899 1.44412 1.41591 1.00549 0.83795 0.75897 0.75855 0.75238 1.22128 1.20791 1.22220 1.22744 0.94769 0.93049 0.91243 1.83072 0.94284 1.67946 1.07596 0.92612 0.92355 0.92554 0.91437 0.91505 0.90543 0.89809 0.83960 0.83012 0.76927 0.92494 0.91093 0.92463 0.88383 0.93444 0.94456 0.92865 0.93678 0.93162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 3 C -0.05 -0.32 5.65 -27.88 -0.16 -0.47 16 4 C -0.19 -1.61 5.53 -35.86 -0.20 -1.80 16 5 C -0.15 -1.34 9.99 -41.41 -0.41 -1.75 16 6 C -0.05 -0.58 10.01 -40.44 -0.40 -0.99 16 7 C -0.26 -3.17 6.45 -36.79 -0.24 -3.40 16 8 C 0.59 8.53 7.75 -12.89 -0.10 8.43 16 9 O -0.53 -9.34 16.50 5.19 0.09 -9.25 16 10 N -0.72 -9.51 5.07 -55.14 -0.28 -9.79 16 11 C 0.15 2.21 2.47 -67.93 -0.17 2.05 16 12 H 0.09 1.51 7.32 -51.93 -0.38 1.13 16 13 C -0.16 -1.99 9.29 37.16 0.35 -1.64 16 14 C -0.14 -2.33 3.67 -89.97 -0.33 -2.66 16 15 C 0.13 2.53 7.33 -8.50 -0.06 2.47 16 16 N -0.62 -15.46 3.62 -184.59 -0.67 -16.13 16 17 C -0.30 -8.85 11.03 -15.06 -0.17 -9.02 16 18 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 19 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 20 N -0.93 -29.68 13.70 55.49 0.76 -28.92 16 21 Si 1.06 27.16 25.50 -169.99 -4.34 22.83 16 22 H -0.29 -7.17 6.97 56.52 0.39 -6.77 16 23 H -0.28 -6.81 5.66 56.52 0.32 -6.49 16 24 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 25 C 0.11 2.28 5.18 -8.37 -0.04 2.24 16 26 S 0.20 1.88 22.10 -107.50 -2.38 -0.49 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.40 4.50 7.72 -40.82 -0.31 4.18 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.85 7.48 -51.93 -0.39 0.46 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 44 H 0.05 0.98 6.81 -51.93 -0.35 0.62 16 45 H 0.05 1.10 6.22 -51.93 -0.32 0.77 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -34.24 378.05 -10.28 -44.52 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.34 Total: 0.22 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -1.82 Total: -8.68 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.19 Total: -54.84 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 27.16 SS G_CDS: -4.34 Total: 22.83 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.38 Total: -0.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.24 -10.28 -44.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969770009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.965 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds