Wall clock time and date at job start Tue Mar 31 2020 13:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47019 * 2 1 4 4 C 1.50703 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.33814 * 124.52793 * 89.99589 * 4 3 2 6 6 C 1.37471 * 115.10229 * 179.72402 * 5 4 3 7 7 C 1.36643 * 113.29661 * 0.45830 * 6 5 4 8 8 C 1.46590 * 125.45868 * 179.83531 * 7 6 5 9 9 O 1.21696 * 119.99658 * 359.71956 * 8 7 6 10 10 N 1.34779 * 119.99921 * 179.71404 * 8 7 6 11 11 C 1.46498 * 119.99683 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.47037 * 325.00179 * 11 10 8 13 13 C 1.52997 * 109.47442 * 85.00303 * 11 10 8 14 14 C 1.53004 * 109.47052 * 205.00617 * 11 10 8 15 15 C 1.53497 * 114.20756 * 180.02562 * 14 11 10 16 16 N 1.47070 * 87.98301 * 220.34168 * 15 14 11 17 17 C 1.36932 * 136.05620 * 207.08686 * 16 15 14 18 18 H 1.08006 * 120.00205 * 7.81892 * 17 16 15 19 19 C 1.38809 * 120.00281 * 187.82655 * 17 16 15 20 20 N 1.31616 * 120.00068 * 195.17204 * 19 17 16 21 21 Si 1.86802 * 119.99918 * 15.16359 * 19 17 16 22 22 H 1.48504 * 109.47042 * 270.00682 * 21 19 17 23 23 H 1.48499 * 109.47021 * 30.00157 * 21 19 17 24 24 H 1.48492 * 109.47106 * 150.00508 * 21 19 17 25 25 C 1.47068 * 87.88415 * 27.33811 * 16 15 14 26 26 S 1.70615 * 124.51936 * 269.97081 * 4 3 2 27 27 H 1.08998 * 109.46714 * 60.00084 * 1 2 3 28 28 H 1.08997 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46935 * 300.00305 * 1 2 3 30 30 H 1.08995 * 109.47344 * 239.99944 * 2 1 3 31 31 H 1.09001 * 109.47437 * 119.99791 * 2 1 3 32 32 H 1.09000 * 109.47516 * 60.00051 * 3 2 1 33 33 H 1.09000 * 109.46792 * 299.99601 * 3 2 1 34 34 H 1.08005 * 122.44676 * 359.95696 * 5 4 3 35 35 H 1.08003 * 123.35069 * 180.27205 * 6 5 4 36 36 H 0.96997 * 120.00003 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.46904 * 59.99183 * 13 11 10 38 38 H 1.08993 * 109.47359 * 180.02562 * 13 11 10 39 39 H 1.08999 * 109.46774 * 299.99974 * 13 11 10 40 40 H 1.09005 * 113.40728 * 313.19431 * 14 11 10 41 41 H 1.08996 * 113.46841 * 105.55693 * 15 14 11 42 42 H 1.08998 * 113.51535 * 335.12668 * 15 14 11 43 43 H 0.96995 * 120.00585 * 354.89801 * 20 19 17 44 44 H 1.09005 * 113.46482 * 87.44223 * 25 16 15 45 45 H 1.09000 * 113.46807 * 217.87726 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3050 1.4426 -1.1034 6 6 5.6612 1.4486 -0.8788 7 6 5.9894 1.4434 0.4476 8 6 7.3527 1.4443 0.9863 9 8 8.3059 1.4449 0.2297 10 7 7.5505 1.4445 2.3195 11 6 8.9130 1.4460 2.8579 12 1 9.5609 0.8573 2.2084 13 6 9.4319 2.8836 2.9284 14 6 8.9075 0.8363 4.2612 15 6 10.2880 0.7848 4.9304 16 7 9.9333 -0.5481 5.4407 17 6 10.2836 -1.3165 6.5187 18 1 10.8946 -0.8977 7.3047 19 6 9.8535 -2.6337 6.6013 20 7 9.9256 -3.2789 7.7462 21 14 9.1723 -3.4904 5.0876 22 1 7.7045 -3.2763 5.0161 23 1 9.8139 -2.9304 3.8710 24 1 9.4568 -4.9454 5.1722 25 6 9.0416 -0.6952 4.2805 26 16 4.5144 1.4430 1.4047 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8821 1.4420 -2.0972 35 1 6.3944 1.4537 -1.6719 36 1 6.7907 1.4437 2.9225 37 1 8.7840 3.4723 3.5777 38 1 10.4458 2.8846 3.3285 39 1 9.4358 3.3179 1.9287 40 1 8.1157 1.2273 4.9002 41 1 10.4179 1.5298 5.7153 42 1 11.1151 0.7718 4.2207 43 1 10.3466 -2.8603 8.5132 44 1 9.5397 -1.0985 3.3987 45 1 8.1097 -1.2112 4.5118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969770009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:03 Heat of formation + Delta-G solvation = 14.602724 kcal Electronic energy + Delta-G solvation = -24324.515972 eV Core-core repulsion = 20855.100382 eV Total energy + Delta-G solvation = -3469.415590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24696 -40.13335 -38.91106 -36.36314 -35.74865 -34.54928 -32.44646 -31.00419 -29.52916 -27.90211 -26.91610 -25.49674 -24.70549 -23.21879 -22.33330 -21.91179 -21.36727 -20.07754 -19.55410 -18.92854 -17.61032 -17.17837 -16.78056 -16.35959 -16.17412 -15.82583 -15.79394 -15.37035 -15.18721 -14.83181 -14.64074 -14.45181 -14.12595 -13.68181 -13.57021 -13.43402 -13.26923 -13.18954 -13.10822 -12.72943 -12.62369 -12.49069 -12.35053 -12.06800 -11.91949 -11.88489 -11.75278 -11.51272 -11.47478 -11.22134 -11.00600 -10.85356 -10.23473 -9.63172 -9.53277 -9.26138 -8.63321 -5.47845 -0.51172 0.45940 0.90257 1.36019 1.38907 1.47641 1.62284 2.03606 2.17084 2.49442 2.98824 3.14009 3.43095 3.67767 3.76415 3.89097 4.07136 4.16776 4.17291 4.30500 4.34575 4.43479 4.43651 4.58934 4.62370 4.64604 4.67991 4.73527 4.77532 4.84574 4.85538 4.96509 4.97851 5.06152 5.17283 5.19018 5.24344 5.27404 5.30045 5.36549 5.43046 5.46400 5.49536 5.94481 6.40816 6.68867 7.07949 7.31987 8.27105 8.88239 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.003157 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.041842 B = 8866.573009 C =10258.705283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.182 4.182 5 C -0.160 4.160 6 C -0.053 4.053 7 C -0.301 4.301 8 C 0.589 3.411 9 O -0.572 6.572 10 N -0.711 5.711 11 C 0.160 3.840 12 H 0.073 0.927 13 C -0.152 4.152 14 C -0.105 4.105 15 C 0.129 3.871 16 N -0.658 5.658 17 C -0.290 4.290 18 H 0.053 0.947 19 C -0.082 4.082 20 N -0.968 5.968 21 Si 1.098 2.902 22 H -0.274 1.274 23 H -0.263 1.263 24 H -0.301 1.301 25 C 0.098 3.902 26 S 0.224 5.776 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.407 0.593 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.116 0.884 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.248 0.752 44 H 0.045 0.955 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.984 14.921 -19.627 31.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.302 4.302 5 C -0.190 4.190 6 C -0.087 4.087 7 C -0.421 4.421 8 C 0.377 3.623 9 O -0.453 6.453 10 N -0.361 5.361 11 C 0.055 3.945 12 H 0.091 0.909 13 C -0.210 4.210 14 C -0.125 4.125 15 C 0.003 3.997 16 N -0.386 5.386 17 C -0.418 4.418 18 H 0.071 0.929 19 C -0.275 4.275 20 N -0.614 5.614 21 Si 0.924 3.076 22 H -0.201 1.201 23 H -0.188 1.188 24 H -0.229 1.229 25 C -0.027 4.027 26 S 0.493 5.507 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.183 0.817 35 H 0.166 0.834 36 H 0.243 0.757 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.198 13.412 -18.877 30.727 hybrid contribution 1.446 0.936 -0.219 1.736 sum -18.752 14.348 -19.096 30.367 Atomic orbital electron populations 1.21767 0.94374 1.02219 1.02523 1.21564 0.96767 0.95232 1.02379 1.20384 0.85284 0.98451 1.04910 1.24636 1.02301 1.06007 0.97257 1.20118 0.91633 1.06424 1.00837 1.20925 0.97185 0.95724 0.94842 1.24505 0.96816 1.21671 0.99115 1.17256 0.87335 0.75390 0.82290 1.90790 1.43328 1.52369 1.58862 1.45900 1.09582 1.74604 1.06052 1.20858 0.82765 0.97994 0.92836 0.90883 1.22063 1.02377 0.94410 1.02143 1.23249 0.99613 0.94355 0.95259 1.22495 0.94742 0.86928 0.95499 1.46308 1.50790 1.18280 1.23209 1.20014 1.31591 0.94308 0.95888 0.92923 1.26951 1.01653 0.94335 1.04530 1.70996 1.46898 1.42336 1.01156 0.83323 0.76726 0.74536 0.73009 1.20053 1.18830 1.22927 1.22934 0.93743 0.96375 0.89629 1.82942 0.92834 1.67450 1.07492 0.91739 0.92502 0.92231 0.91696 0.92514 0.89610 0.88070 0.81682 0.83399 0.75666 0.90718 0.90472 0.92935 0.86588 0.92360 0.93176 0.94282 0.93747 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 71.98 0.71 -0.44 16 2 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 3 C -0.05 -0.46 5.65 29.85 0.17 -0.29 16 4 C -0.18 -2.53 5.53 24.68 0.14 -2.39 16 5 C -0.16 -2.40 9.99 21.08 0.21 -2.18 16 6 C -0.05 -1.06 10.01 21.72 0.22 -0.84 16 7 C -0.30 -6.80 6.45 24.08 0.16 -6.65 16 8 C 0.59 16.47 7.75 86.42 0.67 17.14 16 9 O -0.57 -20.01 16.50 -4.33 -0.07 -20.08 16 10 N -0.71 -17.55 5.07 -446.59 -2.27 -19.82 16 11 C 0.16 4.32 2.47 44.99 0.11 4.43 16 12 H 0.07 2.31 7.32 -2.39 -0.02 2.29 16 13 C -0.15 -3.42 9.29 71.98 0.67 -2.75 16 14 C -0.11 -3.23 3.67 -10.37 -0.04 -3.27 16 15 C 0.13 4.72 7.33 83.18 0.61 5.33 16 16 N -0.66 -31.95 3.62 -737.93 -2.67 -34.63 16 17 C -0.29 -17.10 11.03 84.03 0.93 -16.18 16 18 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 19 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 20 N -0.97 -63.36 13.70 21.65 0.30 -63.07 16 21 Si 1.10 54.86 25.50 68.60 1.75 56.61 16 22 H -0.27 -12.70 6.97 99.48 0.69 -12.01 16 23 H -0.26 -12.17 5.66 99.48 0.56 -11.61 16 24 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 25 C 0.10 3.98 5.18 83.26 0.43 4.41 16 26 S 0.22 3.66 22.10 -56.49 -1.25 2.41 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 36 H 0.41 8.25 7.72 -92.71 -0.72 7.54 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.64 7.48 -2.39 -0.02 1.63 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 43 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 44 H 0.04 1.84 6.81 -2.38 -0.02 1.83 16 45 H 0.05 1.92 6.22 -2.39 -0.01 1.90 16 Total: -1.00 -75.63 378.05 1.48 -74.14 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.07 Total: 13.65 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.63 Total: -9.21 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -4.64 Total: -117.51 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.07 Total: -20.08 kcal Atomic # 14 Polarization: 54.86 SS G_CDS: 1.75 Total: 56.61 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.25 Total: 2.41 kcal Total: -75.63 1.48 -74.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969770009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.743 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds