Wall clock time and date at job start Tue Mar 31 2020 13:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46816 * 2 1 4 4 C 1.52997 * 109.47368 * 120.00049 * 2 1 3 5 5 C 1.50694 * 109.47532 * 240.00590 * 2 1 3 6 6 C 1.33817 * 124.52584 * 59.99182 * 5 2 1 7 7 C 1.37469 * 115.10536 * 180.02562 * 6 5 2 8 8 C 1.36648 * 113.29456 * 0.02562 * 7 6 5 9 9 C 1.46587 * 125.45995 * 180.02562 * 8 7 6 10 10 O 1.21705 * 119.99596 * 354.52175 * 9 8 7 11 11 N 1.34773 * 120.00158 * 174.52491 * 9 8 7 12 12 C 1.47429 * 125.64503 * 184.55630 * 11 9 8 13 13 C 1.55131 * 104.72027 * 155.81958 * 12 11 9 14 14 C 1.55160 * 101.48859 * 37.28938 * 13 12 11 15 15 H 1.09002 * 110.71665 * 82.69640 * 14 13 12 16 16 N 1.46499 * 110.72307 * 205.97142 * 14 13 12 17 17 C 1.36936 * 119.99752 * 199.98200 * 16 14 13 18 18 H 1.07993 * 120.00339 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99425 * 179.97438 * 17 16 14 20 20 N 1.31612 * 120.00422 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99720 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47058 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47006 * 119.99744 * 21 19 17 24 24 H 1.48501 * 109.47127 * 240.00280 * 21 19 17 25 25 C 1.47024 * 125.65012 * 4.86208 * 11 9 8 26 26 S 1.70621 * 124.52282 * 239.69883 * 5 2 1 27 27 H 1.09000 * 109.47454 * 59.99950 * 1 2 3 28 28 H 1.08992 * 109.47557 * 299.99501 * 1 2 3 29 29 H 1.09004 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47166 * 60.00122 * 3 2 1 31 31 H 1.09000 * 109.47189 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47149 * 300.00236 * 3 2 1 33 33 H 1.08999 * 109.46762 * 60.00238 * 4 2 1 34 34 H 1.09000 * 109.47159 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47037 * 300.00137 * 4 2 1 36 36 H 1.08005 * 122.44723 * 0.02777 * 6 5 2 37 37 H 1.08000 * 123.35304 * 179.97438 * 7 6 5 38 38 H 1.09001 * 110.36646 * 274.74124 * 12 11 9 39 39 H 1.08992 * 110.37037 * 37.06970 * 12 11 9 40 40 H 1.09002 * 111.18913 * 279.19230 * 13 12 11 41 41 H 1.09000 * 110.91060 * 155.27386 * 13 12 11 42 42 H 0.96997 * 119.99699 * 19.97585 * 16 14 13 43 43 H 0.97000 * 120.00286 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.87932 * 300.44133 * 25 11 9 45 45 H 1.09001 * 109.88108 * 61.45241 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0324 -0.7102 -1.2305 6 6 1.7654 -0.3328 -2.4862 7 6 2.3232 -1.1222 -3.4637 8 6 3.0571 -2.1616 -2.9653 9 6 3.7656 -3.1637 -3.7670 10 8 3.6469 -3.1687 -4.9782 11 7 4.5485 -4.0794 -3.1627 12 6 5.3880 -5.0786 -3.8484 13 6 6.5006 -5.4275 -2.8252 14 6 5.7125 -5.3962 -1.4890 15 1 5.1949 -6.3412 -1.3245 16 7 6.6046 -5.0902 -0.3680 17 6 6.2308 -5.4069 0.9107 18 1 5.2781 -5.8818 1.0928 19 6 7.0764 -5.1173 1.9728 20 7 8.2376 -4.5390 1.7508 21 14 6.5661 -5.5486 3.7173 22 1 5.2251 -6.1862 3.6974 23 1 7.5537 -6.4901 4.3034 24 1 6.5136 -4.3120 4.5377 25 6 4.7017 -4.2514 -1.7107 26 16 3.0234 -2.0989 -1.2085 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5137 0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6767 -1.7489 1.2491 34 1 3.1300 -0.7208 1.2494 35 1 1.6767 -0.2074 2.1392 36 1 1.1562 0.5292 -2.7151 37 1 2.1935 -0.9397 -4.5202 38 1 4.8014 -5.9646 -4.0912 39 1 5.8241 -4.6521 -4.7517 40 1 7.2904 -4.6762 -2.8305 41 1 6.9071 -6.4207 -3.0160 42 1 7.4602 -4.6633 -0.5316 43 1 8.8286 -4.3370 2.4930 44 1 5.0807 -3.3310 -1.2664 45 1 3.7414 -4.5101 -1.2646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970775465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:23 Heat of formation + Delta-G solvation = -1.593626 kcal Electronic energy + Delta-G solvation = -25294.317929 eV Core-core repulsion = 21824.200012 eV Total energy + Delta-G solvation = -3470.117916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78112 -38.75721 -37.30406 -35.76301 -34.11618 -31.67730 -30.31193 -28.60897 -27.59666 -27.47869 -27.43411 -25.18066 -23.90016 -22.56813 -20.60624 -20.37218 -20.26249 -17.91098 -17.66079 -17.26848 -16.11735 -15.85819 -15.62413 -14.84345 -14.71346 -14.46796 -14.13219 -13.95381 -13.55072 -13.33350 -13.28299 -12.88277 -12.86130 -12.65795 -12.47020 -12.21136 -12.08255 -11.88926 -11.83174 -11.59148 -11.37723 -11.24428 -11.12319 -11.07294 -10.94530 -10.82980 -10.39698 -10.26642 -10.10503 -9.90702 -9.77317 -9.07602 -8.70408 -8.45400 -8.22410 -7.16945 -5.90768 -3.22238 0.65792 1.65451 2.11262 2.48627 3.17727 3.34837 3.39781 3.41628 3.43233 4.39543 4.46470 4.67905 4.71452 4.79173 5.07152 5.10038 5.16884 5.31191 5.40498 5.42345 5.43704 5.51293 5.55941 5.59731 5.59926 5.69681 5.70293 5.72585 5.79547 5.93117 5.95772 6.02872 6.04537 6.12179 6.13585 6.17809 6.26163 6.29115 6.41384 6.45892 6.52679 6.75590 7.58411 7.70916 8.25799 8.30884 9.38669 9.91187 10.26424 11.31079 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.005010 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.790000 B = 5587.576664 C = 8051.234325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 C -0.136 4.136 4 C -0.157 4.157 5 C -0.207 4.207 6 C -0.158 4.158 7 C -0.059 4.059 8 C -0.277 4.277 9 C 0.602 3.398 10 O -0.548 6.548 11 N -0.610 5.610 12 C 0.113 3.887 13 C -0.141 4.141 14 C 0.178 3.822 15 H 0.069 0.931 16 N -0.712 5.712 17 C -0.250 4.250 18 H 0.074 0.926 19 C -0.006 4.006 20 N -0.927 5.927 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.059 3.941 26 S 0.259 5.741 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.082 0.918 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 7.779 -5.441 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C -0.194 4.194 4 C -0.215 4.215 5 C -0.327 4.327 6 C -0.189 4.189 7 C -0.093 4.093 8 C -0.398 4.398 9 C 0.391 3.609 10 O -0.428 6.428 11 N -0.343 5.343 12 C -0.010 4.010 13 C -0.179 4.179 14 C 0.065 3.935 15 H 0.087 0.913 16 N -0.352 5.352 17 C -0.381 4.381 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.068 4.068 26 S 0.531 5.469 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.223 0.777 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.272 6.859 -4.755 14.841 hybrid contribution -0.666 1.018 -0.140 1.225 sum -12.938 7.877 -4.896 15.919 Atomic orbital electron populations 1.21873 0.93207 1.02268 1.01936 1.19123 0.95722 0.94882 0.90374 1.21884 1.01630 0.93977 1.01908 1.22038 1.02153 1.00654 0.96633 1.24786 1.05053 1.03849 0.98990 1.19753 1.05198 1.02896 0.91015 1.20592 0.95137 0.92593 1.00936 1.24632 1.11977 1.04889 0.98255 1.16638 0.78266 0.79635 0.86390 1.90778 1.64685 1.73939 1.13413 1.48392 1.44154 1.33081 1.08699 1.22239 0.91508 0.91091 0.96158 1.23130 0.97255 1.02600 0.94958 1.21140 0.90435 0.94232 0.87704 0.91304 1.42403 1.19265 1.72001 1.01504 1.19286 1.01970 1.33563 0.83306 0.90821 1.24760 0.96479 1.00933 0.98074 1.69663 1.10023 1.46974 1.30802 0.86157 0.77755 0.77661 0.84843 1.20369 1.21715 1.21719 1.23526 1.01586 1.03145 0.78556 1.84100 1.42169 1.20821 0.99822 0.92359 0.92065 0.92340 0.92059 0.92179 0.92360 0.91826 0.91527 0.91394 0.84734 0.83640 0.91399 0.90688 0.90390 0.89744 0.77747 0.93319 0.90048 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.33 37.16 0.31 -0.87 16 2 C 0.00 0.01 0.90 -155.67 -0.14 -0.13 16 3 C -0.14 -1.26 8.33 37.16 0.31 -0.95 16 4 C -0.16 -1.69 7.52 37.16 0.28 -1.41 16 5 C -0.21 -2.57 4.97 -35.86 -0.18 -2.74 16 6 C -0.16 -1.92 9.18 -41.41 -0.38 -2.30 16 7 C -0.06 -0.83 10.02 -40.44 -0.41 -1.23 16 8 C -0.28 -4.40 6.38 -36.79 -0.23 -4.63 16 9 C 0.60 10.75 7.80 -12.90 -0.10 10.65 16 10 O -0.55 -10.98 17.14 5.18 0.09 -10.89 16 11 N -0.61 -10.24 3.32 -171.95 -0.57 -10.81 16 12 C 0.11 1.67 6.90 -2.41 -0.02 1.65 16 13 C -0.14 -2.14 6.71 -24.46 -0.16 -2.30 16 14 C 0.18 3.22 3.59 -66.10 -0.24 2.99 16 15 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 16 N -0.71 -16.29 5.18 -51.65 -0.27 -16.56 16 17 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -26.41 13.06 55.49 0.72 -25.69 16 21 Si 0.91 21.08 29.55 -169.99 -5.02 16.05 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.06 1.02 4.94 -3.07 -0.02 1.01 16 26 S 0.26 3.72 16.74 -107.50 -1.80 1.93 16 27 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.50 7.86 -51.93 -0.41 0.09 16 33 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 34 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.13 1.34 7.90 -52.48 -0.41 0.92 16 37 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 40 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.39 9.53 7.71 -40.82 -0.31 9.22 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.08 1.53 6.54 -51.89 -0.34 1.19 16 45 H 0.06 1.07 7.16 -51.93 -0.37 0.70 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -29.77 373.58 -9.70 -39.47 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.26 Total: 7.95 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.22 Total: -7.07 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.11 Total: -53.06 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.80 Total: 1.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.77 -9.70 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970775465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.878 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds