Wall clock time and date at job start Tue Mar 31 2020 13:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46816 * 2 1 4 4 C 1.52997 * 109.47368 * 120.00049 * 2 1 3 5 5 C 1.50694 * 109.47532 * 240.00590 * 2 1 3 6 6 C 1.33817 * 124.52584 * 59.99182 * 5 2 1 7 7 C 1.37469 * 115.10536 * 180.02562 * 6 5 2 8 8 C 1.36648 * 113.29456 * 0.02562 * 7 6 5 9 9 C 1.46587 * 125.45995 * 180.02562 * 8 7 6 10 10 O 1.21705 * 119.99596 * 354.52175 * 9 8 7 11 11 N 1.34773 * 120.00158 * 174.52491 * 9 8 7 12 12 C 1.47429 * 125.64503 * 184.55630 * 11 9 8 13 13 C 1.55131 * 104.72027 * 155.81958 * 12 11 9 14 14 C 1.55160 * 101.48859 * 37.28938 * 13 12 11 15 15 H 1.09002 * 110.71665 * 82.69640 * 14 13 12 16 16 N 1.46499 * 110.72307 * 205.97142 * 14 13 12 17 17 C 1.36936 * 119.99752 * 199.98200 * 16 14 13 18 18 H 1.07993 * 120.00339 * 359.97438 * 17 16 14 19 19 C 1.38818 * 119.99425 * 179.97438 * 17 16 14 20 20 N 1.31612 * 120.00422 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99720 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47058 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47006 * 119.99744 * 21 19 17 24 24 H 1.48501 * 109.47127 * 240.00280 * 21 19 17 25 25 C 1.47024 * 125.65012 * 4.86208 * 11 9 8 26 26 S 1.70621 * 124.52282 * 239.69883 * 5 2 1 27 27 H 1.09000 * 109.47454 * 59.99950 * 1 2 3 28 28 H 1.08992 * 109.47557 * 299.99501 * 1 2 3 29 29 H 1.09004 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47166 * 60.00122 * 3 2 1 31 31 H 1.09000 * 109.47189 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47149 * 300.00236 * 3 2 1 33 33 H 1.08999 * 109.46762 * 60.00238 * 4 2 1 34 34 H 1.09000 * 109.47159 * 180.02562 * 4 2 1 35 35 H 1.09006 * 109.47037 * 300.00137 * 4 2 1 36 36 H 1.08005 * 122.44723 * 0.02777 * 6 5 2 37 37 H 1.08000 * 123.35304 * 179.97438 * 7 6 5 38 38 H 1.09001 * 110.36646 * 274.74124 * 12 11 9 39 39 H 1.08992 * 110.37037 * 37.06970 * 12 11 9 40 40 H 1.09002 * 111.18913 * 279.19230 * 13 12 11 41 41 H 1.09000 * 110.91060 * 155.27386 * 13 12 11 42 42 H 0.96997 * 119.99699 * 19.97585 * 16 14 13 43 43 H 0.97000 * 120.00286 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.87932 * 300.44133 * 25 11 9 45 45 H 1.09001 * 109.88108 * 61.45241 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0324 -0.7102 -1.2305 6 6 1.7654 -0.3328 -2.4862 7 6 2.3232 -1.1222 -3.4637 8 6 3.0571 -2.1616 -2.9653 9 6 3.7656 -3.1637 -3.7670 10 8 3.6469 -3.1687 -4.9782 11 7 4.5485 -4.0794 -3.1627 12 6 5.3880 -5.0786 -3.8484 13 6 6.5006 -5.4275 -2.8252 14 6 5.7125 -5.3962 -1.4890 15 1 5.1949 -6.3412 -1.3245 16 7 6.6046 -5.0902 -0.3680 17 6 6.2308 -5.4069 0.9107 18 1 5.2781 -5.8818 1.0928 19 6 7.0764 -5.1173 1.9728 20 7 8.2376 -4.5390 1.7508 21 14 6.5661 -5.5486 3.7173 22 1 5.2251 -6.1862 3.6974 23 1 7.5537 -6.4901 4.3034 24 1 6.5136 -4.3120 4.5377 25 6 4.7017 -4.2514 -1.7107 26 16 3.0234 -2.0989 -1.2085 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5137 0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6767 -1.7489 1.2491 34 1 3.1300 -0.7208 1.2494 35 1 1.6767 -0.2074 2.1392 36 1 1.1562 0.5292 -2.7151 37 1 2.1935 -0.9397 -4.5202 38 1 4.8014 -5.9646 -4.0912 39 1 5.8241 -4.6521 -4.7517 40 1 7.2904 -4.6762 -2.8305 41 1 6.9071 -6.4207 -3.0160 42 1 7.4602 -4.6633 -0.5316 43 1 8.8286 -4.3370 2.4930 44 1 5.0807 -3.3310 -1.2664 45 1 3.7414 -4.5101 -1.2646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970775465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:22 Heat of formation + Delta-G solvation = -17.759297 kcal Electronic energy + Delta-G solvation = -25295.018925 eV Core-core repulsion = 21824.200012 eV Total energy + Delta-G solvation = -3470.818912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13308 -39.75898 -38.67442 -36.76900 -35.87452 -33.35790 -31.78720 -29.80480 -29.06359 -28.33700 -28.12839 -26.44267 -25.58181 -23.90112 -21.95018 -21.56044 -21.37472 -19.24853 -19.08491 -18.75324 -17.50601 -17.12637 -16.75166 -16.42844 -15.94813 -15.50346 -15.32893 -15.21775 -14.97314 -14.81912 -14.51108 -14.19032 -13.87782 -13.67274 -13.60493 -13.52480 -13.20444 -12.96593 -12.93213 -12.82742 -12.59956 -12.53813 -12.42899 -12.30168 -12.06612 -11.92771 -11.90228 -11.75241 -11.65213 -11.39940 -11.19783 -10.94132 -9.96537 -9.54724 -9.44719 -9.08167 -7.93549 -5.23988 -0.47063 0.53327 1.03241 1.37901 1.50431 1.51943 1.60731 1.87482 2.12467 2.57609 3.35765 3.39343 3.52830 3.82688 3.86784 3.87715 3.89259 4.00201 4.24785 4.27580 4.30925 4.41625 4.51404 4.53457 4.65852 4.68728 4.74253 4.77807 4.85575 4.92488 4.93588 4.98276 4.99186 5.02553 5.10723 5.15043 5.20473 5.31094 5.35052 5.36412 5.40481 5.45678 5.56434 6.26528 6.34381 6.94420 7.35170 8.04548 8.29396 9.29501 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009667 B = 0.005010 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.790000 B = 5587.576664 C = 8051.234325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.000 4.000 3 C -0.134 4.134 4 C -0.159 4.159 5 C -0.191 4.191 6 C -0.158 4.158 7 C -0.050 4.050 8 C -0.310 4.310 9 C 0.598 3.402 10 O -0.577 6.577 11 N -0.612 5.612 12 C 0.113 3.887 13 C -0.128 4.128 14 C 0.170 3.830 15 H 0.077 0.923 16 N -0.723 5.723 17 C -0.241 4.241 18 H 0.082 0.918 19 C -0.066 4.066 20 N -0.966 5.966 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.295 1.295 25 C 0.074 3.926 26 S 0.231 5.769 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.065 0.935 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.883 8.431 -5.303 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.002 4.002 3 C -0.193 4.193 4 C -0.217 4.217 5 C -0.311 4.311 6 C -0.187 4.187 7 C -0.084 4.084 8 C -0.430 4.430 9 C 0.388 3.612 10 O -0.460 6.460 11 N -0.344 5.344 12 C -0.009 4.009 13 C -0.166 4.166 14 C 0.060 3.940 15 H 0.095 0.905 16 N -0.361 5.361 17 C -0.372 4.372 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.616 5.616 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.223 1.223 25 C -0.053 4.053 26 S 0.503 5.497 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.424 7.480 -4.642 16.898 hybrid contribution -0.089 0.870 -0.236 0.906 sum -14.513 8.350 -4.878 17.440 Atomic orbital electron populations 1.21868 0.91480 1.02295 1.03347 1.19268 0.96962 0.95141 0.88862 1.21892 1.00746 0.93245 1.03378 1.22067 1.01009 1.00721 0.97909 1.25098 1.03382 1.02409 1.00226 1.19977 1.05134 1.03389 0.90237 1.20864 0.93907 0.91889 1.01755 1.24574 1.13878 1.05828 0.98735 1.16925 0.78166 0.79842 0.86251 1.90746 1.65931 1.74835 1.14505 1.48436 1.44144 1.33333 1.08482 1.22368 0.91304 0.91359 0.95896 1.23048 0.96815 1.03621 0.93141 1.21344 0.90490 0.94529 0.87673 0.90538 1.42522 1.19557 1.72036 1.02027 1.19649 1.01660 1.31558 0.84369 0.90036 1.25466 0.96815 1.02040 1.01520 1.69805 1.11282 1.49237 1.31293 0.85220 0.77833 0.76932 0.80695 1.18719 1.22369 1.22260 1.23184 1.01299 1.01871 0.78962 1.84147 1.43527 1.22756 0.99316 0.91371 0.90304 0.93024 0.90273 0.93619 0.91286 0.92508 0.93342 0.89515 0.81774 0.83015 0.89542 0.90331 0.91302 0.87574 0.79046 0.94026 0.91696 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.33 71.98 0.60 -1.31 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 3 C -0.13 -2.14 8.33 71.98 0.60 -1.54 16 4 C -0.16 -3.23 7.52 71.98 0.54 -2.69 16 5 C -0.19 -4.45 4.97 24.68 0.12 -4.33 16 6 C -0.16 -3.50 9.18 21.08 0.19 -3.31 16 7 C -0.05 -1.34 10.02 21.72 0.22 -1.12 16 8 C -0.31 -9.81 6.38 24.08 0.15 -9.66 16 9 C 0.60 21.40 7.80 86.42 0.67 22.07 16 10 O -0.58 -23.18 17.14 -4.37 -0.07 -23.26 16 11 N -0.61 -20.38 3.32 -816.15 -2.71 -23.10 16 12 C 0.11 3.21 6.90 86.93 0.60 3.81 16 13 C -0.13 -3.76 6.71 32.07 0.22 -3.55 16 14 C 0.17 6.09 3.59 46.18 0.17 6.26 16 15 H 0.08 2.64 8.12 -2.39 -0.02 2.62 16 16 N -0.72 -33.23 5.18 -317.33 -1.64 -34.87 16 17 C -0.24 -12.24 9.98 84.03 0.84 -11.40 16 18 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 20 N -0.97 -56.14 13.06 21.65 0.28 -55.86 16 21 Si 0.96 43.48 29.55 68.60 2.03 45.50 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.07 2.55 4.94 86.73 0.43 2.98 16 26 S 0.23 6.63 16.74 -56.49 -0.95 5.69 16 27 H 0.07 0.87 7.86 -2.39 -0.02 0.85 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.96 7.86 -2.39 -0.02 0.94 16 33 H 0.06 1.21 7.91 -2.39 -0.02 1.19 16 34 H 0.05 1.15 7.90 -2.39 -0.02 1.13 16 35 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.16 2.67 7.90 -2.91 -0.02 2.64 16 37 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 40 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 41 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.38 18.89 7.71 -92.71 -0.72 18.17 16 43 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 44 H 0.07 2.49 6.54 -2.41 -0.02 2.47 16 45 H 0.07 2.30 7.16 -2.39 -0.02 2.28 16 Total: -1.00 -64.12 373.58 2.97 -61.15 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.26 Total: 31.64 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.77 Total: -6.90 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -4.07 Total: -113.82 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.26 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -0.95 Total: 5.69 kcal Total: -64.12 2.97 -61.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970775465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.392 kcal (2) G-P(sol) polarization free energy of solvation -64.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds