Wall clock time and date at job start Tue Mar 31 2020 13:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46720 * 2 1 4 4 C 1.37476 * 122.44546 * 264.97178 * 3 2 1 5 5 C 1.36654 * 113.29579 * 180.02562 * 4 3 2 6 6 C 1.46574 * 125.45756 * 179.97438 * 5 4 3 7 7 O 1.21702 * 120.00411 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99907 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99869 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47194 * 35.00352 * 9 8 6 11 11 C 1.52999 * 109.47087 * 274.99848 * 9 8 6 12 12 C 1.53003 * 109.47163 * 155.00347 * 9 8 6 13 13 C 1.53486 * 114.20850 * 180.02562 * 12 9 8 14 14 N 1.47064 * 87.98715 * 87.51930 * 13 12 9 15 15 C 1.36944 * 136.05968 * 207.08932 * 14 13 12 16 16 H 1.07995 * 119.99517 * 7.55331 * 15 14 13 17 17 C 1.38804 * 120.00270 * 187.55676 * 15 14 13 18 18 N 1.31616 * 120.00491 * 174.37770 * 17 15 14 19 19 Si 1.86810 * 119.99801 * 354.37977 * 17 15 14 20 20 H 1.48499 * 109.46858 * 174.95062 * 19 17 15 21 21 H 1.48498 * 109.46907 * 294.94544 * 19 17 15 22 22 H 1.48495 * 109.47036 * 54.94600 * 19 17 15 23 23 C 1.47066 * 87.88390 * 27.34185 * 14 13 12 24 24 S 1.75828 * 109.08081 * 0.26422 * 5 4 3 25 25 C 1.33812 * 122.45414 * 84.99950 * 3 2 1 26 26 C 1.50703 * 124.51978 * 359.94164 * 25 3 2 27 27 H 1.08998 * 109.47041 * 60.00272 * 1 2 3 28 28 H 1.08999 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47356 * 300.00078 * 1 2 3 30 30 H 1.09000 * 109.47356 * 239.99922 * 2 1 3 31 31 H 1.08997 * 109.46983 * 119.99184 * 2 1 3 32 32 H 1.07997 * 123.35403 * 0.04054 * 4 3 2 33 33 H 0.96997 * 119.99750 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46986 * 60.00526 * 11 9 8 35 35 H 1.09004 * 109.47074 * 180.02562 * 11 9 8 36 36 H 1.08994 * 109.47561 * 300.00057 * 11 9 8 37 37 H 1.08998 * 113.41116 * 46.79441 * 12 9 8 38 38 H 1.09003 * 113.46770 * 332.73878 * 13 12 9 39 39 H 1.09002 * 113.52590 * 202.30733 * 13 12 9 40 40 H 0.97003 * 119.99848 * 354.81683 * 18 17 15 41 41 H 1.08996 * 113.46631 * 87.44126 * 23 14 13 42 42 H 1.09001 * 113.46561 * 217.88042 * 23 14 13 43 43 H 1.08994 * 109.47096 * 90.00368 * 26 25 3 44 44 H 1.09001 * 109.47071 * 210.00284 * 26 25 3 45 45 H 1.09001 * 109.47132 * 329.99704 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3739 2.0824 -1.1557 5 6 2.8061 3.3605 -0.9392 6 6 3.2360 4.3003 -1.9786 7 8 3.2250 3.9617 -3.1475 8 7 3.6426 5.5399 -1.6400 9 6 4.0717 6.4794 -2.6790 10 1 3.4737 6.3258 -3.5772 11 6 5.5482 6.2424 -3.0025 12 6 3.8829 7.9133 -2.1796 13 6 4.3007 8.9914 -3.1890 14 7 2.9417 8.9222 -3.7468 15 6 2.3622 9.1613 -4.9643 16 1 2.9805 9.3692 -5.8250 17 6 0.9803 9.1364 -5.0921 18 7 0.4187 9.4741 -6.2336 19 14 -0.0825 8.6237 -3.6439 20 1 -1.5149 8.7972 -3.9953 21 1 0.1781 7.1984 -3.3188 22 1 0.2443 9.4678 -2.4667 23 6 2.4779 8.4896 -2.4200 24 16 2.7718 3.6943 0.7868 25 6 2.1788 2.1307 1.1248 26 6 1.8672 1.6156 2.5064 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.3072 1.6364 -2.1370 33 1 3.6510 5.8100 -0.7084 34 1 5.6828 5.2209 -3.3583 35 1 5.8677 6.9417 -3.7752 36 1 6.1463 6.3960 -2.1043 37 1 4.2627 8.0740 -1.1706 38 1 5.0725 8.6599 -3.8837 39 1 4.5326 9.9519 -2.7287 40 1 0.9641 9.8120 -6.9612 41 1 2.2288 9.3173 -1.7560 42 1 1.6967 7.7304 -2.4595 43 1 2.7569 1.1495 2.9296 44 1 1.5544 2.4446 3.1413 45 1 1.0647 0.8803 2.4476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970846967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:55 Heat of formation + Delta-G solvation = 42.318989 kcal Electronic energy + Delta-G solvation = -24981.793066 eV Core-core repulsion = 21513.579343 eV Total energy + Delta-G solvation = -3468.213723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00898 -39.07552 -38.25947 -34.80750 -33.16862 -32.36466 -31.82494 -30.56795 -27.81648 -27.29333 -25.40176 -24.20009 -24.10886 -22.97457 -21.32366 -20.43305 -19.33536 -18.55160 -17.91832 -17.39806 -16.57584 -16.03386 -15.27869 -15.07992 -14.99699 -14.50564 -14.29628 -14.13620 -13.80014 -13.49157 -13.43063 -13.19668 -13.11945 -12.98625 -12.67313 -12.31975 -12.27788 -12.03415 -11.79015 -11.66982 -11.45223 -11.26317 -11.24455 -10.96088 -10.90511 -10.58705 -10.27723 -10.21547 -9.85259 -9.18933 -9.08936 -8.96617 -8.84104 -8.75487 -8.57571 -7.11589 -6.23698 -3.17713 0.37031 1.27898 1.68976 2.20027 3.19145 3.30292 3.44069 3.49596 3.68274 4.47221 4.60435 4.64694 4.75778 4.78431 4.85355 4.96289 5.00274 5.07294 5.09766 5.16097 5.32251 5.37357 5.49297 5.50701 5.61011 5.62132 5.65369 5.69602 5.80134 5.86789 5.94090 5.95898 6.07631 6.13328 6.21984 6.25668 6.29238 6.33034 6.44647 6.52524 6.64493 6.91547 7.16463 7.58395 8.28976 8.29720 9.03094 9.55571 10.41557 11.26320 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003497 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.176409 B = 8004.313096 C = 8677.529016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.063 4.063 3 C -0.118 4.118 4 C -0.049 4.049 5 C -0.258 4.258 6 C 0.588 3.412 7 O -0.523 6.523 8 N -0.718 5.718 9 C 0.167 3.833 10 H 0.105 0.895 11 C -0.157 4.157 12 C -0.143 4.143 13 C 0.131 3.869 14 N -0.626 5.626 15 C -0.302 4.302 16 H 0.083 0.917 17 C -0.024 4.024 18 N -0.935 5.935 19 Si 1.067 2.933 20 H -0.295 1.295 21 H -0.293 1.293 22 H -0.288 1.288 23 C 0.099 3.901 24 S 0.192 5.808 25 C -0.199 4.199 26 C -0.085 4.085 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.393 0.607 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.260 0.740 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 -17.178 21.019 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.082 4.082 5 C -0.378 4.378 6 C 0.373 3.627 7 O -0.401 6.401 8 N -0.368 5.368 9 C 0.063 3.937 10 H 0.123 0.877 11 C -0.215 4.215 12 C -0.163 4.163 13 C 0.004 3.996 14 N -0.355 5.355 15 C -0.428 4.428 16 H 0.101 0.899 17 C -0.222 4.222 18 N -0.577 5.577 19 Si 0.900 3.100 20 H -0.223 1.223 21 H -0.221 1.221 22 H -0.215 1.215 23 C -0.026 4.026 24 S 0.461 5.539 25 C -0.319 4.319 26 C -0.143 4.143 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.226 0.774 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.227 -16.346 21.257 27.320 hybrid contribution 1.197 -0.588 -0.833 1.572 sum 6.424 -16.934 20.424 27.298 Atomic orbital electron populations 1.21763 0.94718 1.01681 1.02454 1.20238 0.96048 0.91091 1.02833 1.18648 1.04635 0.98495 0.91325 1.20627 0.95870 0.91893 0.99842 1.24588 1.15975 1.00288 0.96934 1.16927 0.77167 0.81300 0.87294 1.90859 1.54080 1.76852 1.18268 1.45974 1.67150 1.13064 1.10655 1.20692 0.95818 0.85811 0.91353 0.87692 1.22113 0.95513 1.02271 1.01603 1.23211 0.99917 0.94117 0.99009 1.22351 0.90128 0.94415 0.92678 1.46021 1.04154 1.80198 1.05149 1.20143 0.91820 1.47094 0.83765 0.89921 1.25653 0.93917 0.99803 1.02858 1.70909 1.37382 1.45224 1.04232 0.83757 0.75746 0.75920 0.74553 1.22276 1.22072 1.21508 1.22826 0.94829 0.96470 0.88512 1.82884 1.60589 1.11341 0.99080 1.23970 1.08168 0.99399 1.00323 1.20396 1.02476 1.01490 0.89958 0.92257 0.92332 0.92616 0.90802 0.91032 0.83015 0.77365 0.92426 0.91001 0.92877 0.90453 0.93196 0.94196 0.92957 0.93648 0.92926 0.90556 0.91132 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.83 37.16 0.37 -0.72 16 2 C -0.06 -0.48 5.54 -27.88 -0.15 -0.64 16 3 C -0.12 -1.20 5.04 -106.45 -0.54 -1.73 16 4 C -0.05 -0.62 9.78 -40.43 -0.40 -1.02 16 5 C -0.26 -3.50 6.45 -36.79 -0.24 -3.74 16 6 C 0.59 9.86 7.75 -12.90 -0.10 9.76 16 7 O -0.52 -10.87 16.50 5.19 0.09 -10.79 16 8 N -0.72 -10.82 5.07 -55.14 -0.28 -11.10 16 9 C 0.17 2.86 2.43 -67.93 -0.16 2.69 16 10 H 0.11 2.32 7.36 -51.93 -0.38 1.94 16 11 C -0.16 -2.30 9.29 37.16 0.35 -1.95 16 12 C -0.14 -2.39 3.73 -89.97 -0.34 -2.73 16 13 C 0.13 2.52 8.08 -8.52 -0.07 2.45 16 14 N -0.63 -15.56 3.49 -184.63 -0.64 -16.21 16 15 C -0.30 -8.92 11.08 -15.06 -0.17 -9.09 16 16 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 17 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 18 N -0.94 -30.45 13.70 55.49 0.76 -29.69 16 19 Si 1.07 28.04 25.16 -169.99 -4.28 23.76 16 20 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.29 -7.52 6.51 56.52 0.37 -7.15 16 22 H -0.29 -6.96 6.20 56.52 0.35 -6.61 16 23 C 0.10 2.11 5.24 -8.38 -0.04 2.07 16 24 S 0.19 1.91 22.10 -107.50 -2.38 -0.46 16 25 C -0.20 -1.83 6.28 -35.86 -0.23 -2.06 16 26 C -0.08 -0.52 9.71 36.01 0.35 -0.17 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.39 7.24 -51.93 -0.38 0.02 16 30 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 31 H 0.07 0.45 7.46 -51.93 -0.39 0.06 16 32 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.39 4.72 7.72 -40.82 -0.31 4.41 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.06 6.50 -51.93 -0.34 0.72 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 8.35 8.73 -40.82 -0.36 7.99 16 41 H 0.05 0.93 7.66 -51.93 -0.40 0.54 16 42 H 0.05 1.21 4.71 -51.93 -0.24 0.96 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.43 6.39 -51.93 -0.33 0.10 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -35.61 371.10 -9.60 -45.21 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.99 Total: 1.39 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.46 Total: -7.70 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.16 Total: -57.00 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 28.04 SS G_CDS: -4.28 Total: 23.76 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.38 Total: -0.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.61 -9.60 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970846967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.527 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds