Wall clock time and date at job start Tue Mar 31 2020 13:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46720 * 2 1 4 4 C 1.37476 * 122.44546 * 264.97178 * 3 2 1 5 5 C 1.36654 * 113.29579 * 180.02562 * 4 3 2 6 6 C 1.46574 * 125.45756 * 179.97438 * 5 4 3 7 7 O 1.21702 * 120.00411 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99907 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99869 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47194 * 35.00352 * 9 8 6 11 11 C 1.52999 * 109.47087 * 274.99848 * 9 8 6 12 12 C 1.53003 * 109.47163 * 155.00347 * 9 8 6 13 13 C 1.53486 * 114.20850 * 180.02562 * 12 9 8 14 14 N 1.47064 * 87.98715 * 87.51930 * 13 12 9 15 15 C 1.36944 * 136.05968 * 207.08932 * 14 13 12 16 16 H 1.07995 * 119.99517 * 7.55331 * 15 14 13 17 17 C 1.38804 * 120.00270 * 187.55676 * 15 14 13 18 18 N 1.31616 * 120.00491 * 174.37770 * 17 15 14 19 19 Si 1.86810 * 119.99801 * 354.37977 * 17 15 14 20 20 H 1.48499 * 109.46858 * 174.95062 * 19 17 15 21 21 H 1.48498 * 109.46907 * 294.94544 * 19 17 15 22 22 H 1.48495 * 109.47036 * 54.94600 * 19 17 15 23 23 C 1.47066 * 87.88390 * 27.34185 * 14 13 12 24 24 S 1.75828 * 109.08081 * 0.26422 * 5 4 3 25 25 C 1.33812 * 122.45414 * 84.99950 * 3 2 1 26 26 C 1.50703 * 124.51978 * 359.94164 * 25 3 2 27 27 H 1.08998 * 109.47041 * 60.00272 * 1 2 3 28 28 H 1.08999 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47356 * 300.00078 * 1 2 3 30 30 H 1.09000 * 109.47356 * 239.99922 * 2 1 3 31 31 H 1.08997 * 109.46983 * 119.99184 * 2 1 3 32 32 H 1.07997 * 123.35403 * 0.04054 * 4 3 2 33 33 H 0.96997 * 119.99750 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.46986 * 60.00526 * 11 9 8 35 35 H 1.09004 * 109.47074 * 180.02562 * 11 9 8 36 36 H 1.08994 * 109.47561 * 300.00057 * 11 9 8 37 37 H 1.08998 * 113.41116 * 46.79441 * 12 9 8 38 38 H 1.09003 * 113.46770 * 332.73878 * 13 12 9 39 39 H 1.09002 * 113.52590 * 202.30733 * 13 12 9 40 40 H 0.97003 * 119.99848 * 354.81683 * 18 17 15 41 41 H 1.08996 * 113.46631 * 87.44126 * 23 14 13 42 42 H 1.09001 * 113.46561 * 217.88042 * 23 14 13 43 43 H 1.08994 * 109.47096 * 90.00368 * 26 25 3 44 44 H 1.09001 * 109.47071 * 210.00284 * 26 25 3 45 45 H 1.09001 * 109.47132 * 329.99704 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3739 2.0824 -1.1557 5 6 2.8061 3.3605 -0.9392 6 6 3.2360 4.3003 -1.9786 7 8 3.2250 3.9617 -3.1475 8 7 3.6426 5.5399 -1.6400 9 6 4.0717 6.4794 -2.6790 10 1 3.4737 6.3258 -3.5772 11 6 5.5482 6.2424 -3.0025 12 6 3.8829 7.9133 -2.1796 13 6 4.3007 8.9914 -3.1890 14 7 2.9417 8.9222 -3.7468 15 6 2.3622 9.1613 -4.9643 16 1 2.9805 9.3692 -5.8250 17 6 0.9803 9.1364 -5.0921 18 7 0.4187 9.4741 -6.2336 19 14 -0.0825 8.6237 -3.6439 20 1 -1.5149 8.7972 -3.9953 21 1 0.1781 7.1984 -3.3188 22 1 0.2443 9.4678 -2.4667 23 6 2.4779 8.4896 -2.4200 24 16 2.7718 3.6943 0.7868 25 6 2.1788 2.1307 1.1248 26 6 1.8672 1.6156 2.5064 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 2.3072 1.6364 -2.1370 33 1 3.6510 5.8100 -0.7084 34 1 5.6828 5.2209 -3.3583 35 1 5.8677 6.9417 -3.7752 36 1 6.1463 6.3960 -2.1043 37 1 4.2627 8.0740 -1.1706 38 1 5.0725 8.6599 -3.8837 39 1 4.5326 9.9519 -2.7287 40 1 0.9641 9.8120 -6.9612 41 1 2.2288 9.3173 -1.7560 42 1 1.6967 7.7304 -2.4595 43 1 2.7569 1.1495 2.9296 44 1 1.5544 2.4446 3.1413 45 1 1.0647 0.8803 2.4476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970846967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:54 Heat of formation + Delta-G solvation = 17.643993 kcal Electronic energy + Delta-G solvation = -24982.863054 eV Core-core repulsion = 21513.579343 eV Total energy + Delta-G solvation = -3469.283711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34961 -40.28295 -39.42167 -36.27540 -34.57110 -33.95118 -32.49917 -31.88293 -29.68440 -28.16964 -26.96918 -25.49160 -24.84714 -24.30927 -22.87471 -21.64234 -20.75062 -19.72597 -19.32922 -18.92567 -17.80337 -17.22973 -16.89363 -16.35482 -16.15941 -15.88966 -15.45678 -15.21249 -15.07880 -15.05093 -14.64078 -14.53905 -14.07858 -13.74263 -13.61662 -13.44316 -13.30948 -13.14702 -12.90533 -12.87036 -12.73039 -12.60559 -12.42746 -12.27769 -12.07829 -11.86308 -11.74650 -11.60041 -11.35824 -11.18122 -11.07662 -10.89643 -10.28899 -9.61994 -9.35337 -9.21229 -8.62831 -5.47246 -0.54350 0.44138 0.86379 1.29743 1.30308 1.41746 1.59628 1.97705 2.12317 2.49331 3.01600 3.18873 3.39578 3.71145 3.75239 3.83078 4.07279 4.15475 4.28895 4.34032 4.38335 4.50321 4.51791 4.57325 4.62271 4.65009 4.69158 4.71606 4.74173 4.75670 4.83567 4.91886 4.97592 5.06924 5.10700 5.15890 5.16992 5.24430 5.29972 5.31329 5.45020 5.51838 5.53562 5.94567 6.40159 6.69484 7.08538 7.32350 8.27522 8.89202 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.003497 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.176409 B = 8004.313096 C = 8677.529016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.053 4.053 5 C -0.303 4.303 6 C 0.583 3.417 7 O -0.581 6.581 8 N -0.705 5.705 9 C 0.168 3.832 10 H 0.044 0.956 11 C -0.148 4.148 12 C -0.110 4.110 13 C 0.128 3.872 14 N -0.664 5.664 15 C -0.283 4.283 16 H 0.050 0.950 17 C -0.089 4.089 18 N -0.975 5.975 19 Si 1.109 2.891 20 H -0.305 1.305 21 H -0.293 1.293 22 H -0.248 1.248 23 C 0.088 3.912 24 S 0.245 5.755 25 C -0.185 4.185 26 C -0.088 4.088 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.411 0.589 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.246 0.754 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.654 -17.929 26.607 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.088 4.088 5 C -0.423 4.423 6 C 0.371 3.629 7 O -0.463 6.463 8 N -0.357 5.357 9 C 0.063 3.937 10 H 0.063 0.937 11 C -0.206 4.206 12 C -0.129 4.129 13 C 0.003 3.997 14 N -0.393 5.393 15 C -0.411 4.411 16 H 0.068 0.932 17 C -0.280 4.280 18 N -0.621 5.621 19 Si 0.936 3.064 20 H -0.233 1.233 21 H -0.222 1.222 22 H -0.172 1.172 23 C -0.037 4.037 24 S 0.515 5.485 25 C -0.305 4.305 26 C -0.146 4.146 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.153 0.847 33 H 0.248 0.752 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.155 0.845 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.425 -17.071 26.933 32.528 hybrid contribution 0.963 -0.428 -2.519 2.731 sum 7.388 -17.499 24.414 30.932 Atomic orbital electron populations 1.21758 0.94498 1.02486 1.01731 1.20290 0.96153 0.89764 1.03786 1.18781 1.05447 0.99780 0.90618 1.20759 0.95641 0.92049 1.00328 1.24373 1.18804 1.00237 0.98884 1.17418 0.76258 0.81925 0.87297 1.90819 1.56571 1.77994 1.20878 1.45768 1.66532 1.12222 1.11140 1.20480 0.96403 0.86853 0.89925 0.93724 1.22024 0.94109 1.01251 1.03175 1.23030 0.96331 0.92379 1.01176 1.22644 0.87446 0.96506 0.93078 1.46136 1.07333 1.80709 1.05109 1.20011 0.91643 1.43959 0.85456 0.93202 1.26930 0.95897 1.00780 1.04434 1.71000 1.37547 1.48537 1.05059 0.83258 0.73650 0.76142 0.73356 1.23302 1.22158 1.17248 1.23111 0.96947 0.96863 0.86757 1.82549 1.59548 1.11346 0.95067 1.24513 1.05575 0.98825 1.01625 1.20596 1.03790 1.02385 0.87875 0.94293 0.90800 0.91989 0.91115 0.88837 0.84730 0.75187 0.93978 0.91358 0.89070 0.84494 0.92991 0.91309 0.94509 0.91334 0.94820 0.88680 0.89794 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.83 71.98 0.71 -1.19 16 2 C -0.06 -0.81 5.54 29.85 0.17 -0.65 16 3 C -0.13 -2.50 5.04 -21.05 -0.11 -2.61 16 4 C -0.05 -1.36 9.78 21.72 0.21 -1.15 16 5 C -0.30 -8.14 6.45 24.08 0.16 -7.98 16 6 C 0.58 19.96 7.75 86.42 0.67 20.63 16 7 O -0.58 -25.82 16.50 -4.36 -0.07 -25.89 16 8 N -0.71 -20.30 5.07 -446.58 -2.27 -22.56 16 9 C 0.17 5.58 2.43 44.99 0.11 5.69 16 10 H 0.04 2.06 7.36 -2.39 -0.02 2.04 16 11 C -0.15 -4.10 9.29 71.98 0.67 -3.43 16 12 C -0.11 -3.28 3.73 -10.37 -0.04 -3.32 16 13 C 0.13 4.59 8.08 83.17 0.67 5.26 16 14 N -0.66 -32.59 3.49 -738.04 -2.58 -35.17 16 15 C -0.28 -17.26 11.08 84.03 0.93 -16.32 16 16 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 17 C -0.09 -5.65 5.50 84.86 0.47 -5.18 16 18 N -0.98 -66.56 13.70 21.65 0.30 -66.26 16 19 Si 1.11 57.68 25.16 68.60 1.73 59.41 16 20 H -0.30 -16.16 7.11 99.48 0.71 -15.46 16 21 H -0.29 -15.09 6.51 99.48 0.65 -14.44 16 22 H -0.25 -11.12 6.20 99.48 0.62 -10.51 16 23 C 0.09 3.50 5.24 83.26 0.44 3.93 16 24 S 0.25 4.14 22.10 -56.49 -1.25 2.89 16 25 C -0.19 -2.82 6.28 24.68 0.15 -2.66 16 26 C -0.09 -0.68 9.71 71.24 0.69 0.01 16 27 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.71 7.24 -2.39 -0.02 0.70 16 30 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 31 H 0.09 0.85 7.46 -2.39 -0.02 0.83 16 32 H 0.13 3.74 8.06 -2.91 -0.02 3.71 16 33 H 0.41 8.52 7.72 -92.71 -0.72 7.80 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.93 6.50 -2.39 -0.02 1.92 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.05 1.84 6.43 -2.39 -0.02 1.82 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.25 16.78 8.73 -92.71 -0.81 15.97 16 41 H 0.07 2.48 7.66 -2.39 -0.02 2.46 16 42 H 0.03 1.49 4.71 -2.39 -0.01 1.48 16 43 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 0.55 6.39 -2.39 -0.02 0.54 16 Total: -1.00 -85.20 371.10 1.85 -83.35 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.10 Total: 13.21 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.90 Total: -8.97 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -4.55 Total: -123.99 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.07 Total: -25.89 kcal Atomic # 14 Polarization: 57.68 SS G_CDS: 1.73 Total: 59.41 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.25 Total: 2.89 kcal Total: -85.20 1.85 -83.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970846967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.992 kcal (2) G-P(sol) polarization free energy of solvation -85.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds