Wall clock time and date at job start Tue Mar 31 2020 13:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46939 * 2 1 4 4 S 1.70618 * 124.52290 * 270.02661 * 3 2 1 5 5 C 1.75838 * 91.56364 * 179.97438 * 4 3 2 6 6 C 1.46574 * 125.46035 * 179.97438 * 5 4 3 7 7 O 1.21702 * 120.00411 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99907 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99869 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47194 * 35.00352 * 9 8 6 11 11 C 1.52999 * 109.47087 * 274.99848 * 9 8 6 12 12 C 1.53003 * 109.47163 * 155.00347 * 9 8 6 13 13 C 1.53486 * 114.20850 * 180.02562 * 12 9 8 14 14 N 1.47064 * 87.98715 * 87.51930 * 13 12 9 15 15 C 1.36944 * 136.05968 * 207.08932 * 14 13 12 16 16 H 1.07995 * 119.99517 * 7.55331 * 15 14 13 17 17 C 1.38804 * 120.00270 * 187.55676 * 15 14 13 18 18 N 1.31616 * 120.00491 * 174.37770 * 17 15 14 19 19 Si 1.86810 * 119.99801 * 354.37977 * 17 15 14 20 20 H 1.48499 * 109.46858 * 174.95062 * 19 17 15 21 21 H 1.48498 * 109.46907 * 294.94544 * 19 17 15 22 22 H 1.48495 * 109.47036 * 54.94600 * 19 17 15 23 23 C 1.47066 * 87.88390 * 27.34185 * 14 13 12 24 24 C 1.36647 * 109.08014 * 0.23888 * 5 4 3 25 25 C 1.33821 * 124.52410 * 89.99722 * 3 2 1 26 26 C 1.50699 * 122.44614 * 0.02562 * 25 3 2 27 27 H 1.08997 * 109.46976 * 60.00495 * 1 2 3 28 28 H 1.09007 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47388 * 299.99668 * 1 2 3 30 30 H 1.09000 * 109.47388 * 240.00331 * 2 1 3 31 31 H 1.09001 * 109.47413 * 120.00115 * 2 1 3 32 32 H 0.96997 * 119.99750 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47074 * 180.02562 * 11 9 8 34 34 H 1.08994 * 109.47561 * 300.00057 * 11 9 8 35 35 H 1.09000 * 109.46986 * 60.00526 * 11 9 8 36 36 H 1.08998 * 113.41116 * 46.79441 * 12 9 8 37 37 H 1.09003 * 113.46770 * 332.73878 * 13 12 9 38 38 H 1.09002 * 113.52590 * 202.30733 * 13 12 9 39 39 H 0.97003 * 119.99848 * 354.81683 * 18 17 15 40 40 H 1.08996 * 113.46631 * 87.44126 * 23 14 13 41 41 H 1.09001 * 113.46561 * 217.88042 * 23 14 13 42 42 H 1.08004 * 123.35268 * 179.75487 * 24 5 4 43 43 H 1.09002 * 109.47008 * 89.99969 * 26 25 3 44 44 H 1.08996 * 109.47163 * 209.99488 * 26 25 3 45 45 H 1.09000 * 109.47411 * 329.99666 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3539 2.3327 -1.4057 5 6 2.8454 3.7238 -0.4491 6 6 3.2996 5.0089 -0.9882 7 8 3.6176 5.9079 -0.2320 8 7 3.3650 5.1951 -2.3215 9 6 3.8196 6.4793 -2.8603 10 1 4.5916 6.8929 -2.2114 11 6 2.6386 7.4496 -2.9306 12 6 4.3915 6.2698 -4.2639 13 6 4.9030 7.5529 -4.9331 14 7 6.2000 7.3135 -4.2824 15 6 7.2485 8.0861 -3.8594 16 1 7.1671 9.1628 -3.8763 17 6 8.4160 7.4853 -3.4090 18 7 9.4624 8.2243 -3.1072 19 14 8.5019 5.6277 -3.2311 20 1 9.8821 5.2299 -2.8543 21 1 7.5543 5.1871 -2.1761 22 1 8.1376 4.9895 -4.5215 23 6 5.8782 5.8785 -4.2918 24 6 2.7416 3.4129 0.8775 25 6 2.2850 2.1359 1.1025 26 6 2.0890 1.5799 2.4894 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1112 4.4787 -2.9242 33 1 2.9767 8.4050 -3.3319 34 1 1.8667 7.0361 -3.5795 35 1 2.2311 7.5989 -1.9307 36 1 3.7578 5.6544 -4.9024 37 1 4.4015 8.4550 -4.5824 38 1 4.9447 7.4897 -6.0204 39 1 9.4443 9.1804 -3.2703 40 1 6.1767 5.3727 -5.2101 41 1 6.2074 5.3539 -3.3949 42 1 2.9906 4.1027 1.6703 43 1 3.0108 1.1037 2.8236 44 1 1.8301 2.3892 3.1721 45 1 1.2844 0.8447 2.4758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970851043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:55 Heat of formation + Delta-G solvation = 42.046945 kcal Electronic energy + Delta-G solvation = -24943.977397 eV Core-core repulsion = 21475.751878 eV Total energy + Delta-G solvation = -3468.225519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99907 -39.01500 -38.23380 -34.81710 -34.07002 -32.38084 -31.09462 -30.05048 -27.82468 -27.67174 -25.64540 -24.84450 -23.53528 -22.63767 -21.42589 -20.52203 -19.39574 -18.55276 -17.92171 -17.39858 -16.56661 -16.05990 -15.33405 -15.12341 -14.81553 -14.64604 -14.46412 -13.97492 -13.84154 -13.59110 -13.36355 -13.19017 -13.09177 -12.92309 -12.51265 -12.40341 -12.30067 -12.02411 -11.81998 -11.64678 -11.47347 -11.44372 -11.24914 -11.00137 -10.95356 -10.58735 -10.27741 -10.21587 -9.85540 -9.18996 -9.08977 -8.97125 -8.84452 -8.76646 -8.55235 -7.11660 -6.23739 -3.17762 0.37069 1.28284 1.70135 2.20199 3.19166 3.29954 3.44099 3.49622 3.68314 4.33534 4.61629 4.64700 4.70080 4.78375 4.86270 4.92204 4.99777 5.05188 5.09558 5.15109 5.36592 5.41356 5.44211 5.49242 5.55620 5.61833 5.64527 5.69311 5.75773 5.81304 5.86698 5.94029 6.07461 6.11464 6.21956 6.26125 6.29163 6.32967 6.44529 6.52447 6.64368 6.91464 7.16400 7.58185 8.28824 8.29578 9.03050 9.55533 10.41504 11.26288 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.003356 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.526522 B = 8342.079756 C = 8800.549789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.199 4.199 4 S 0.193 5.807 5 C -0.257 4.257 6 C 0.588 3.412 7 O -0.523 6.523 8 N -0.718 5.718 9 C 0.167 3.833 10 H 0.105 0.895 11 C -0.157 4.157 12 C -0.143 4.143 13 C 0.131 3.869 14 N -0.627 5.627 15 C -0.302 4.302 16 H 0.083 0.917 17 C -0.024 4.024 18 N -0.935 5.935 19 Si 1.067 2.933 20 H -0.295 1.295 21 H -0.293 1.293 22 H -0.288 1.288 23 C 0.099 3.901 24 C -0.052 4.052 25 C -0.119 4.119 26 C -0.093 4.093 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.393 0.607 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.041 0.959 39 H 0.260 0.740 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.153 0.847 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.707 -18.000 4.518 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.318 4.318 4 S 0.462 5.538 5 C -0.377 4.377 6 C 0.373 3.627 7 O -0.401 6.401 8 N -0.368 5.368 9 C 0.063 3.937 10 H 0.123 0.877 11 C -0.215 4.215 12 C -0.163 4.163 13 C 0.004 3.996 14 N -0.355 5.355 15 C -0.428 4.428 16 H 0.101 0.899 17 C -0.222 4.222 18 N -0.578 5.578 19 Si 0.900 3.100 20 H -0.223 1.223 21 H -0.221 1.221 22 H -0.215 1.215 23 C -0.026 4.026 24 C -0.085 4.085 25 C -0.132 4.132 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.226 0.774 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.170 0.830 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.374 -18.678 4.049 27.935 hybrid contribution -0.883 1.187 0.533 1.572 sum -21.257 -17.492 4.582 27.907 Atomic orbital electron populations 1.21793 0.94149 1.02055 1.02605 1.20123 0.96272 0.89458 1.03476 1.24009 1.08504 1.02027 0.97282 1.82869 1.60480 1.02640 1.07765 1.24602 1.15757 0.99312 0.98036 1.16929 0.77730 0.85527 0.82512 1.90858 1.48528 1.42720 1.57946 1.45974 1.67904 1.16988 1.05971 1.20694 0.96598 0.82101 0.94287 0.87689 1.22113 0.97755 0.99766 1.01863 1.23212 0.96974 1.00633 0.95443 1.22351 0.87043 0.94782 0.95392 1.46023 1.19327 1.01494 1.68693 1.20140 0.91340 0.90427 1.40893 0.89924 1.25656 0.90947 1.06710 0.98931 1.70909 1.29109 1.07343 1.50396 0.83756 0.74581 0.75542 0.76093 1.22267 1.22078 1.21502 1.22826 0.91197 0.89222 0.99390 1.20634 0.96700 0.95794 0.95354 1.18652 1.04102 0.93942 0.96509 1.20515 1.02077 1.01015 0.91610 0.92372 0.91931 0.92185 0.90652 0.89788 0.77363 0.90998 0.92876 0.92425 0.90449 0.93195 0.94192 0.92958 0.93642 0.92927 0.82973 0.91166 0.91307 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.05 -0.35 5.72 -27.88 -0.16 -0.51 16 3 C -0.20 -1.85 5.53 -35.86 -0.20 -2.04 16 4 S 0.19 1.94 22.10 -107.50 -2.38 -0.44 16 5 C -0.26 -3.50 6.45 -36.80 -0.24 -3.74 16 6 C 0.59 9.88 7.75 -12.90 -0.10 9.78 16 7 O -0.52 -10.89 16.50 5.19 0.09 -10.80 16 8 N -0.72 -10.84 5.07 -55.14 -0.28 -11.12 16 9 C 0.17 2.86 2.43 -67.93 -0.16 2.69 16 10 H 0.11 2.33 7.36 -51.93 -0.38 1.94 16 11 C -0.16 -2.30 9.29 37.16 0.35 -1.95 16 12 C -0.14 -2.39 3.73 -89.97 -0.34 -2.73 16 13 C 0.13 2.52 8.08 -8.52 -0.07 2.46 16 14 N -0.63 -15.58 3.49 -184.63 -0.64 -16.22 16 15 C -0.30 -8.92 11.08 -15.06 -0.17 -9.09 16 16 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 17 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 18 N -0.94 -30.47 13.70 55.49 0.76 -29.71 16 19 Si 1.07 28.05 25.16 -169.99 -4.28 23.77 16 20 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.29 -7.52 6.51 56.52 0.37 -7.16 16 22 H -0.29 -6.96 6.20 56.52 0.35 -6.61 16 23 C 0.10 2.11 5.24 -8.38 -0.04 2.07 16 24 C -0.05 -0.65 9.80 -40.44 -0.40 -1.05 16 25 C -0.12 -1.21 5.78 -106.45 -0.62 -1.82 16 26 C -0.09 -0.69 9.55 36.00 0.34 -0.35 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 29 H 0.06 0.35 7.81 -51.93 -0.41 -0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.48 7.25 -51.93 -0.38 0.10 16 32 H 0.39 4.73 7.72 -40.82 -0.31 4.42 16 33 H 0.07 1.06 6.50 -51.93 -0.34 0.72 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.93 6.43 -51.93 -0.33 0.59 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 8.35 8.73 -40.82 -0.36 8.00 16 40 H 0.05 0.94 7.66 -51.93 -0.40 0.54 16 41 H 0.05 1.21 4.71 -51.93 -0.24 0.96 16 42 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 45 H 0.07 0.40 6.86 -51.93 -0.36 0.04 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -35.64 372.07 -9.69 -45.33 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.04 Total: 1.17 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.53 Total: -7.59 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.16 Total: -57.05 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 28.05 SS G_CDS: -4.28 Total: 23.77 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.38 Total: -0.44 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.64 -9.69 -45.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970851043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.377 kcal (2) G-P(sol) polarization free energy of solvation -35.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds