Wall clock time and date at job start Tue Mar 31 2020 13:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46939 * 2 1 4 4 S 1.70618 * 124.52290 * 270.02661 * 3 2 1 5 5 C 1.75838 * 91.56364 * 179.97438 * 4 3 2 6 6 C 1.46574 * 125.46035 * 179.97438 * 5 4 3 7 7 O 1.21702 * 120.00411 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99907 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99869 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47194 * 35.00352 * 9 8 6 11 11 C 1.52999 * 109.47087 * 274.99848 * 9 8 6 12 12 C 1.53003 * 109.47163 * 155.00347 * 9 8 6 13 13 C 1.53486 * 114.20850 * 180.02562 * 12 9 8 14 14 N 1.47064 * 87.98715 * 87.51930 * 13 12 9 15 15 C 1.36944 * 136.05968 * 207.08932 * 14 13 12 16 16 H 1.07995 * 119.99517 * 7.55331 * 15 14 13 17 17 C 1.38804 * 120.00270 * 187.55676 * 15 14 13 18 18 N 1.31616 * 120.00491 * 174.37770 * 17 15 14 19 19 Si 1.86810 * 119.99801 * 354.37977 * 17 15 14 20 20 H 1.48499 * 109.46858 * 174.95062 * 19 17 15 21 21 H 1.48498 * 109.46907 * 294.94544 * 19 17 15 22 22 H 1.48495 * 109.47036 * 54.94600 * 19 17 15 23 23 C 1.47066 * 87.88390 * 27.34185 * 14 13 12 24 24 C 1.36647 * 109.08014 * 0.23888 * 5 4 3 25 25 C 1.33821 * 124.52410 * 89.99722 * 3 2 1 26 26 C 1.50699 * 122.44614 * 0.02562 * 25 3 2 27 27 H 1.08997 * 109.46976 * 60.00495 * 1 2 3 28 28 H 1.09007 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47388 * 299.99668 * 1 2 3 30 30 H 1.09000 * 109.47388 * 240.00331 * 2 1 3 31 31 H 1.09001 * 109.47413 * 120.00115 * 2 1 3 32 32 H 0.96997 * 119.99750 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47074 * 180.02562 * 11 9 8 34 34 H 1.08994 * 109.47561 * 300.00057 * 11 9 8 35 35 H 1.09000 * 109.46986 * 60.00526 * 11 9 8 36 36 H 1.08998 * 113.41116 * 46.79441 * 12 9 8 37 37 H 1.09003 * 113.46770 * 332.73878 * 13 12 9 38 38 H 1.09002 * 113.52590 * 202.30733 * 13 12 9 39 39 H 0.97003 * 119.99848 * 354.81683 * 18 17 15 40 40 H 1.08996 * 113.46631 * 87.44126 * 23 14 13 41 41 H 1.09001 * 113.46561 * 217.88042 * 23 14 13 42 42 H 1.08004 * 123.35268 * 179.75487 * 24 5 4 43 43 H 1.09002 * 109.47008 * 89.99969 * 26 25 3 44 44 H 1.08996 * 109.47163 * 209.99488 * 26 25 3 45 45 H 1.09000 * 109.47411 * 329.99666 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3539 2.3327 -1.4057 5 6 2.8454 3.7238 -0.4491 6 6 3.2996 5.0089 -0.9882 7 8 3.6176 5.9079 -0.2320 8 7 3.3650 5.1951 -2.3215 9 6 3.8196 6.4793 -2.8603 10 1 4.5916 6.8929 -2.2114 11 6 2.6386 7.4496 -2.9306 12 6 4.3915 6.2698 -4.2639 13 6 4.9030 7.5529 -4.9331 14 7 6.2000 7.3135 -4.2824 15 6 7.2485 8.0861 -3.8594 16 1 7.1671 9.1628 -3.8763 17 6 8.4160 7.4853 -3.4090 18 7 9.4624 8.2243 -3.1072 19 14 8.5019 5.6277 -3.2311 20 1 9.8821 5.2299 -2.8543 21 1 7.5543 5.1871 -2.1761 22 1 8.1376 4.9895 -4.5215 23 6 5.8782 5.8785 -4.2918 24 6 2.7416 3.4129 0.8775 25 6 2.2850 2.1359 1.1025 26 6 2.0890 1.5799 2.4894 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1112 4.4787 -2.9242 33 1 2.9767 8.4050 -3.3319 34 1 1.8667 7.0361 -3.5795 35 1 2.2311 7.5989 -1.9307 36 1 3.7578 5.6544 -4.9024 37 1 4.4015 8.4550 -4.5824 38 1 4.9447 7.4897 -6.0204 39 1 9.4443 9.1804 -3.2703 40 1 6.1767 5.3727 -5.2101 41 1 6.2074 5.3539 -3.3949 42 1 2.9906 4.1027 1.6703 43 1 3.0108 1.1037 2.8236 44 1 1.8301 2.3892 3.1721 45 1 1.2844 0.8447 2.4758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970851043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:54 Heat of formation + Delta-G solvation = 17.464759 kcal Electronic energy + Delta-G solvation = -24945.043360 eV Core-core repulsion = 21475.751878 eV Total energy + Delta-G solvation = -3469.291483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.34969 -40.26004 -39.35495 -36.27880 -34.75563 -34.54210 -32.30849 -30.99458 -29.66382 -28.37244 -27.13316 -26.02045 -25.01833 -23.45303 -22.94502 -21.75457 -20.83092 -19.76541 -19.32755 -18.91102 -17.80398 -17.24748 -16.88554 -16.43027 -16.08268 -15.90214 -15.40233 -15.25761 -15.16937 -15.03662 -14.64308 -14.55880 -14.06932 -13.73239 -13.48654 -13.44420 -13.23197 -13.09050 -13.01585 -12.87067 -12.72929 -12.63797 -12.28012 -12.23776 -12.08400 -12.04931 -11.75413 -11.64813 -11.36077 -11.18713 -11.07701 -10.89722 -10.29329 -9.65784 -9.33242 -9.21343 -8.62878 -5.47318 -0.55179 0.43308 0.86995 1.29856 1.30007 1.41850 1.59781 1.97422 2.11635 2.49426 3.01519 3.18842 3.39458 3.68866 3.71546 3.79068 4.09413 4.18475 4.28879 4.33883 4.41679 4.45528 4.49340 4.51133 4.57298 4.64921 4.69372 4.74034 4.81296 4.83499 4.84933 4.87565 5.00979 5.05810 5.07946 5.14433 5.16864 5.24315 5.31062 5.31311 5.42143 5.51642 5.53734 5.94503 6.39570 6.69412 7.07908 7.32309 8.27442 8.89173 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.003356 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.526522 B = 8342.079756 C = 8800.549789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.187 4.187 4 S 0.244 5.756 5 C -0.301 4.301 6 C 0.583 3.417 7 O -0.580 6.580 8 N -0.705 5.705 9 C 0.168 3.832 10 H 0.045 0.955 11 C -0.148 4.148 12 C -0.110 4.110 13 C 0.128 3.872 14 N -0.664 5.664 15 C -0.282 4.282 16 H 0.050 0.950 17 C -0.089 4.089 18 N -0.975 5.975 19 Si 1.109 2.891 20 H -0.305 1.305 21 H -0.293 1.293 22 H -0.248 1.248 23 C 0.088 3.912 24 C -0.056 4.056 25 C -0.134 4.134 26 C -0.092 4.092 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.411 0.589 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.137 0.863 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.246 0.754 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.138 0.862 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.990 -22.142 2.733 33.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.307 4.307 4 S 0.514 5.486 5 C -0.421 4.421 6 C 0.371 3.629 7 O -0.462 6.462 8 N -0.357 5.357 9 C 0.063 3.937 10 H 0.063 0.937 11 C -0.206 4.206 12 C -0.129 4.129 13 C 0.003 3.997 14 N -0.393 5.393 15 C -0.410 4.410 16 H 0.068 0.932 17 C -0.281 4.281 18 N -0.622 5.622 19 Si 0.936 3.064 20 H -0.233 1.233 21 H -0.221 1.221 22 H -0.173 1.173 23 C -0.037 4.037 24 C -0.091 4.091 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.248 0.752 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.155 0.845 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.155 0.845 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.735 -22.853 2.188 33.021 hybrid contribution -0.011 2.475 1.097 2.707 sum -23.746 -20.378 3.285 31.463 Atomic orbital electron populations 1.21796 0.93185 1.03171 1.02330 1.20311 0.96951 0.87448 1.04829 1.24528 1.06242 1.03148 0.96735 1.82541 1.59084 1.00074 1.06861 1.24393 1.18705 0.99728 0.99268 1.17412 0.76763 0.86148 0.82574 1.90820 1.51182 1.44953 1.59237 1.45772 1.67210 1.16829 1.05852 1.20484 0.96223 0.83418 0.93544 0.93685 1.22024 0.97502 0.99155 1.01881 1.23031 0.95111 0.99379 0.95414 1.22643 0.84014 0.96335 0.96675 1.46141 1.19764 1.03587 1.69819 1.20006 0.92532 0.89721 1.38758 0.93210 1.26936 0.91062 1.10331 0.99741 1.71000 1.30890 1.06637 1.53639 0.83257 0.73937 0.71418 0.77791 1.23287 1.22140 1.17256 1.23110 0.94173 0.87004 0.99384 1.20784 0.96490 0.96837 0.94942 1.18815 1.04526 0.93020 0.98259 1.20569 1.03063 1.01419 0.89994 0.92720 0.90169 0.92456 0.89403 0.88389 0.75199 0.91343 0.89089 0.93963 0.84509 0.92980 0.91310 0.94514 0.91334 0.94807 0.84462 0.90609 0.91347 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 71.98 0.71 -0.38 16 2 C -0.06 -0.51 5.72 29.85 0.17 -0.34 16 3 C -0.19 -2.92 5.53 24.68 0.14 -2.79 16 4 S 0.24 4.21 22.10 -56.49 -1.25 2.97 16 5 C -0.30 -8.09 6.45 24.07 0.16 -7.94 16 6 C 0.58 19.94 7.75 86.42 0.67 20.61 16 7 O -0.58 -25.71 16.50 -4.36 -0.07 -25.79 16 8 N -0.71 -20.31 5.07 -446.58 -2.27 -22.57 16 9 C 0.17 5.58 2.43 44.99 0.11 5.69 16 10 H 0.04 2.07 7.36 -2.39 -0.02 2.06 16 11 C -0.15 -4.10 9.29 71.98 0.67 -3.43 16 12 C -0.11 -3.29 3.73 -10.37 -0.04 -3.33 16 13 C 0.13 4.59 8.08 83.17 0.67 5.26 16 14 N -0.66 -32.60 3.49 -738.04 -2.58 -35.17 16 15 C -0.28 -17.21 11.08 84.03 0.93 -16.28 16 16 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 17 C -0.09 -5.67 5.50 84.86 0.47 -5.20 16 18 N -0.98 -66.57 13.70 21.65 0.30 -66.28 16 19 Si 1.11 57.63 25.16 68.60 1.73 59.36 16 20 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 21 H -0.29 -15.06 6.51 99.48 0.65 -14.41 16 22 H -0.25 -11.12 6.20 99.48 0.62 -10.50 16 23 C 0.09 3.50 5.24 83.26 0.44 3.94 16 24 C -0.06 -1.42 9.80 21.72 0.21 -1.21 16 25 C -0.13 -2.51 5.78 -21.05 -0.12 -2.63 16 26 C -0.09 -1.18 9.55 71.24 0.68 -0.50 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.06 0.47 7.81 -2.39 -0.02 0.45 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.69 7.25 -2.39 -0.02 0.67 16 32 H 0.41 8.55 7.72 -92.71 -0.72 7.84 16 33 H 0.07 1.94 6.50 -2.39 -0.02 1.92 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.05 1.84 6.43 -2.39 -0.02 1.82 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.25 16.77 8.73 -92.71 -0.81 15.97 16 40 H 0.07 2.48 7.66 -2.39 -0.02 2.46 16 41 H 0.03 1.49 4.71 -2.39 -0.01 1.48 16 42 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 45 H 0.09 0.76 6.86 -2.39 -0.02 0.74 16 Total: -1.00 -84.81 372.07 1.81 -83.00 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.09 Total: 13.01 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.86 Total: -8.52 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -4.55 Total: -124.02 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.07 Total: -25.79 kcal Atomic # 14 Polarization: 57.63 SS G_CDS: 1.73 Total: 59.36 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.25 Total: 2.97 kcal Total: -84.81 1.81 -83.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970851043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.461 kcal (2) G-P(sol) polarization free energy of solvation -84.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds