Wall clock time and date at job start Tue Mar 31 2020 13:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47155 * 2 1 4 4 C 1.50701 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.33823 * 124.52039 * 89.99927 * 4 3 2 6 6 C 1.37475 * 115.10106 * 180.02562 * 5 4 3 7 7 C 1.36648 * 113.29806 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.45792 * 179.97438 * 7 6 5 9 9 O 1.21702 * 120.00328 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00214 * 180.02562 * 8 7 6 11 11 C 1.47020 * 125.64550 * 359.97438 * 10 8 7 12 12 C 1.54322 * 107.27386 * 178.97559 * 11 10 8 13 13 C 1.55160 * 103.09729 * 337.71547 * 12 11 10 14 14 H 1.08999 * 111.00225 * 277.51264 * 13 12 11 15 15 N 1.46505 * 110.99991 * 153.66446 * 13 12 11 16 16 C 1.46494 * 120.00494 * 299.99699 * 15 13 12 17 17 C 1.36941 * 119.99828 * 120.00002 * 15 13 12 18 18 H 1.08006 * 119.99567 * 21.73066 * 17 15 13 19 19 C 1.38803 * 120.00104 * 201.72640 * 17 15 13 20 20 N 1.31619 * 120.00311 * 13.55469 * 19 17 15 21 21 Si 1.86806 * 120.00204 * 193.55735 * 19 17 15 22 22 H 1.48500 * 109.47186 * 90.00031 * 21 19 17 23 23 H 1.48504 * 109.47292 * 210.00312 * 21 19 17 24 24 H 1.48504 * 109.46691 * 329.99939 * 21 19 17 25 25 C 1.47419 * 125.65186 * 180.02562 * 10 8 7 26 26 S 1.70616 * 124.52605 * 270.27263 * 4 3 2 27 27 H 1.09003 * 109.46813 * 299.99656 * 1 2 3 28 28 H 1.08993 * 109.47380 * 59.99673 * 1 2 3 29 29 H 1.09002 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46867 * 239.99980 * 2 1 3 31 31 H 1.09001 * 109.47139 * 120.00151 * 2 1 3 32 32 H 1.09003 * 109.46979 * 60.00445 * 3 2 1 33 33 H 1.09001 * 109.47220 * 300.00101 * 3 2 1 34 34 H 1.07999 * 122.44577 * 0.02749 * 5 4 3 35 35 H 1.07998 * 123.34588 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.88940 * 59.55302 * 11 10 8 37 37 H 1.09004 * 110.00994 * 298.46578 * 11 10 8 38 38 H 1.09004 * 110.72118 * 96.16758 * 12 11 10 39 39 H 1.08997 * 110.72303 * 219.26480 * 12 11 10 40 40 H 1.09001 * 109.47068 * 94.47700 * 16 15 13 41 41 H 1.08998 * 109.47393 * 214.48365 * 16 15 13 42 42 H 1.09007 * 109.46963 * 334.48794 * 16 15 13 43 43 H 0.96997 * 120.00254 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.36692 * 322.93556 * 25 10 8 45 45 H 1.09003 * 110.36393 * 85.25969 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3059 1.4423 -1.1016 6 6 5.6620 1.4417 -0.8761 7 6 5.9892 1.4420 0.4506 8 6 7.3520 1.4411 0.9903 9 8 8.3058 1.4404 0.2345 10 7 7.5488 1.4410 2.3236 11 6 6.4921 1.4423 3.3457 12 6 7.1870 1.4153 4.7234 13 6 8.5859 0.8273 4.4001 14 1 8.5503 -0.2610 4.3507 15 7 9.5819 1.2742 5.3771 16 6 9.8556 2.7038 5.5426 17 6 10.2572 0.3555 6.1356 18 1 10.3352 -0.6684 5.8009 19 6 10.8414 0.7403 7.3345 20 7 10.5307 1.8990 7.8761 21 14 12.0688 -0.3863 8.1794 22 1 13.4389 -0.0751 7.6984 23 1 12.0010 -0.1794 9.6484 24 1 11.7422 -1.8000 7.8630 25 6 8.8594 1.4406 2.9987 26 16 4.5134 1.4360 1.4067 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.8837 1.4425 -2.0957 35 1 6.3956 1.4411 -1.6686 36 1 5.8634 0.5594 3.2303 37 1 5.8856 2.3434 3.2540 38 1 7.2766 2.4227 5.1299 39 1 6.6472 0.7685 5.4150 40 1 9.2486 3.0979 6.3577 41 1 10.9111 2.8474 5.7733 42 1 9.6104 3.2299 4.6199 43 1 10.9387 2.1677 8.7140 44 1 9.5698 0.8246 2.4475 45 1 9.2355 2.4589 3.0973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971613538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:06 Heat of formation + Delta-G solvation = 14.786658 kcal Electronic energy + Delta-G solvation = -24633.187886 eV Core-core repulsion = 21163.780272 eV Total energy + Delta-G solvation = -3469.407614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.85473 -38.38089 -37.22888 -35.12707 -34.86625 -31.79328 -30.58382 -29.85219 -28.30366 -26.75974 -26.09235 -24.31418 -23.30798 -22.36682 -21.78462 -20.84204 -19.35588 -18.43549 -17.87309 -17.09033 -16.13410 -15.96038 -15.72470 -15.22382 -14.78123 -14.55741 -14.13230 -14.01111 -13.57887 -13.48909 -13.30554 -12.94709 -12.72369 -12.62950 -12.54542 -12.38963 -12.03644 -11.98715 -11.75395 -11.60367 -11.53251 -11.11726 -11.00376 -10.89132 -10.60195 -10.54030 -10.43544 -10.27648 -9.96301 -9.91554 -9.81573 -8.85015 -8.69321 -8.61226 -8.32888 -6.86043 -5.79255 -3.25610 0.43539 1.38112 1.82287 2.30113 3.10132 3.29722 3.36258 3.43168 3.43815 4.35249 4.43954 4.57976 4.61478 4.67557 4.94338 4.98503 5.12121 5.20559 5.21825 5.27705 5.33576 5.41041 5.43391 5.44630 5.52067 5.67605 5.69166 5.73547 5.84103 5.88548 5.91099 5.95012 6.05920 6.22750 6.26186 6.32482 6.48483 6.58722 6.76378 6.83088 7.32531 7.65069 7.67342 7.75958 8.24416 8.31982 9.15655 9.77806 10.25612 11.25593 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.002646 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.022591 B =10580.715185 C =11219.821059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.215 4.215 5 C -0.154 4.154 6 C -0.058 4.058 7 C -0.259 4.259 8 C 0.599 3.401 9 O -0.538 6.538 10 N -0.607 5.607 11 C 0.089 3.911 12 C -0.146 4.146 13 C 0.175 3.825 14 H 0.080 0.920 15 N -0.585 5.585 16 C 0.158 3.842 17 C -0.260 4.260 18 H 0.071 0.929 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.086 3.914 26 S 0.221 5.779 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.151 0.849 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.003 0.997 43 H 0.253 0.747 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.338 -0.343 -14.458 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.334 4.334 5 C -0.184 4.184 6 C -0.092 4.092 7 C -0.379 4.379 8 C 0.387 3.613 9 O -0.417 6.417 10 N -0.340 5.340 11 C -0.036 4.036 12 C -0.187 4.187 13 C 0.064 3.936 14 H 0.098 0.902 15 N -0.305 5.305 16 C 0.013 3.987 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.038 4.038 26 S 0.491 5.509 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.064 -0.261 -13.175 23.175 hybrid contribution 0.806 -0.429 -1.082 1.415 sum -18.257 -0.690 -14.257 23.175 Atomic orbital electron populations 1.21781 0.95351 1.01953 1.01929 1.21567 0.95893 0.95619 1.02818 1.20218 0.87380 0.97953 1.03362 1.24618 1.01374 1.07906 0.99533 1.19890 0.92527 1.06578 0.99408 1.20694 0.96133 0.97217 0.95126 1.24597 0.96828 1.18533 0.97975 1.16574 0.86797 0.77101 0.80844 1.90817 1.41981 1.51668 1.57256 1.48294 1.09663 1.71897 1.04179 1.22195 0.90571 1.01062 0.89732 1.23243 0.98943 1.03409 0.93113 1.21486 0.87568 0.97275 0.87313 0.90220 1.43822 1.41817 1.03328 1.41503 1.20858 1.00412 0.82562 0.94841 1.19237 1.27715 0.92277 0.99688 0.91120 1.24999 1.00808 0.97426 0.96199 1.70075 1.44153 1.21720 1.19022 0.86215 0.81442 0.80116 0.78504 1.21408 1.21734 1.20433 1.23093 0.83447 1.02351 0.94898 1.83490 0.93663 1.67591 1.06178 0.92550 0.92642 0.92455 0.91547 0.91606 0.90678 0.90089 0.84379 0.83189 0.91328 0.91453 0.90282 0.90221 0.94947 0.93555 0.97886 0.93636 0.90613 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 3 C -0.05 -0.35 5.65 -27.88 -0.16 -0.51 16 4 C -0.22 -2.04 5.53 -35.86 -0.20 -2.24 16 5 C -0.15 -1.53 10.00 -41.41 -0.41 -1.95 16 6 C -0.06 -0.72 10.01 -40.43 -0.40 -1.12 16 7 C -0.26 -3.60 6.38 -36.80 -0.23 -3.84 16 8 C 0.60 10.32 7.82 -12.90 -0.10 10.22 16 9 O -0.54 -10.97 17.10 5.19 0.09 -10.88 16 10 N -0.61 -10.10 3.33 -171.79 -0.57 -10.67 16 11 C 0.09 1.25 5.17 -3.07 -0.02 1.23 16 12 C -0.15 -2.41 6.53 -24.90 -0.16 -2.57 16 13 C 0.17 3.42 3.57 -65.51 -0.23 3.18 16 14 H 0.08 1.57 7.93 -51.93 -0.41 1.16 16 15 N -0.58 -14.01 2.97 -170.73 -0.51 -14.52 16 16 C 0.16 3.73 7.89 59.84 0.47 4.20 16 17 C -0.26 -6.90 9.63 -15.06 -0.15 -7.04 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C 0.00 0.12 5.09 -17.43 -0.09 0.03 16 20 N -0.91 -25.59 10.67 55.49 0.59 -24.99 16 21 Si 0.91 21.43 29.57 -169.99 -5.03 16.41 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.09 1.59 6.46 -2.27 -0.01 1.58 16 26 S 0.22 2.37 18.38 -107.50 -1.98 0.40 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 36 H 0.07 0.85 6.82 -51.93 -0.35 0.50 16 37 H 0.07 0.85 6.99 -51.93 -0.36 0.48 16 38 H 0.08 1.38 7.33 -51.93 -0.38 1.00 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.03 0.82 7.41 -51.93 -0.38 0.43 16 41 H 0.05 1.19 7.22 -51.93 -0.38 0.82 16 42 H 0.00 0.06 5.95 -51.93 -0.31 -0.25 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 45 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -30.52 369.94 -10.39 -40.91 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.08 Total: -1.99 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.49 Total: -0.23 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.49 Total: -50.19 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.98 Total: 0.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.52 -10.39 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971613538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.697 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds