Wall clock time and date at job start Tue Mar 31 2020 13:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47155 * 2 1 4 4 C 1.50701 * 109.47100 * 179.97438 * 3 2 1 5 5 C 1.33823 * 124.52039 * 89.99927 * 4 3 2 6 6 C 1.37475 * 115.10106 * 180.02562 * 5 4 3 7 7 C 1.36648 * 113.29806 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.45792 * 179.97438 * 7 6 5 9 9 O 1.21702 * 120.00328 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00214 * 180.02562 * 8 7 6 11 11 C 1.47020 * 125.64550 * 359.97438 * 10 8 7 12 12 C 1.54322 * 107.27386 * 178.97559 * 11 10 8 13 13 C 1.55160 * 103.09729 * 337.71547 * 12 11 10 14 14 H 1.08999 * 111.00225 * 277.51264 * 13 12 11 15 15 N 1.46505 * 110.99991 * 153.66446 * 13 12 11 16 16 C 1.46494 * 120.00494 * 299.99699 * 15 13 12 17 17 C 1.36941 * 119.99828 * 120.00002 * 15 13 12 18 18 H 1.08006 * 119.99567 * 21.73066 * 17 15 13 19 19 C 1.38803 * 120.00104 * 201.72640 * 17 15 13 20 20 N 1.31619 * 120.00311 * 13.55469 * 19 17 15 21 21 Si 1.86806 * 120.00204 * 193.55735 * 19 17 15 22 22 H 1.48500 * 109.47186 * 90.00031 * 21 19 17 23 23 H 1.48504 * 109.47292 * 210.00312 * 21 19 17 24 24 H 1.48504 * 109.46691 * 329.99939 * 21 19 17 25 25 C 1.47419 * 125.65186 * 180.02562 * 10 8 7 26 26 S 1.70616 * 124.52605 * 270.27263 * 4 3 2 27 27 H 1.09003 * 109.46813 * 299.99656 * 1 2 3 28 28 H 1.08993 * 109.47380 * 59.99673 * 1 2 3 29 29 H 1.09002 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46867 * 239.99980 * 2 1 3 31 31 H 1.09001 * 109.47139 * 120.00151 * 2 1 3 32 32 H 1.09003 * 109.46979 * 60.00445 * 3 2 1 33 33 H 1.09001 * 109.47220 * 300.00101 * 3 2 1 34 34 H 1.07999 * 122.44577 * 0.02749 * 5 4 3 35 35 H 1.07998 * 123.34588 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.88940 * 59.55302 * 11 10 8 37 37 H 1.09004 * 110.00994 * 298.46578 * 11 10 8 38 38 H 1.09004 * 110.72118 * 96.16758 * 12 11 10 39 39 H 1.08997 * 110.72303 * 219.26480 * 12 11 10 40 40 H 1.09001 * 109.47068 * 94.47700 * 16 15 13 41 41 H 1.08998 * 109.47393 * 214.48365 * 16 15 13 42 42 H 1.09007 * 109.46963 * 334.48794 * 16 15 13 43 43 H 0.96997 * 120.00254 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.36692 * 322.93556 * 25 10 8 45 45 H 1.09003 * 110.36393 * 85.25969 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3059 1.4423 -1.1016 6 6 5.6620 1.4417 -0.8761 7 6 5.9892 1.4420 0.4506 8 6 7.3520 1.4411 0.9903 9 8 8.3058 1.4404 0.2345 10 7 7.5488 1.4410 2.3236 11 6 6.4921 1.4423 3.3457 12 6 7.1870 1.4153 4.7234 13 6 8.5859 0.8273 4.4001 14 1 8.5503 -0.2610 4.3507 15 7 9.5819 1.2742 5.3771 16 6 9.8556 2.7038 5.5426 17 6 10.2572 0.3555 6.1356 18 1 10.3352 -0.6684 5.8009 19 6 10.8414 0.7403 7.3345 20 7 10.5307 1.8990 7.8761 21 14 12.0688 -0.3863 8.1794 22 1 13.4389 -0.0751 7.6984 23 1 12.0010 -0.1794 9.6484 24 1 11.7422 -1.8000 7.8630 25 6 8.8594 1.4406 2.9987 26 16 4.5134 1.4360 1.4067 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8900 34 1 3.8837 1.4425 -2.0957 35 1 6.3956 1.4411 -1.6686 36 1 5.8634 0.5594 3.2303 37 1 5.8856 2.3434 3.2540 38 1 7.2766 2.4227 5.1299 39 1 6.6472 0.7685 5.4150 40 1 9.2486 3.0979 6.3577 41 1 10.9111 2.8474 5.7733 42 1 9.6104 3.2299 4.6199 43 1 10.9387 2.1677 8.7140 44 1 9.5698 0.8246 2.4475 45 1 9.2355 2.4589 3.0973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971613538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:05 Heat of formation + Delta-G solvation = -1.298103 kcal Electronic energy + Delta-G solvation = -24633.885374 eV Core-core repulsion = 21163.780272 eV Total energy + Delta-G solvation = -3470.105102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19737 -39.41742 -38.53385 -36.61784 -35.74865 -33.55581 -31.67827 -31.18136 -29.62639 -28.10119 -27.71822 -25.50801 -24.51892 -23.81844 -22.31374 -21.96809 -20.97617 -19.42324 -19.06074 -18.95455 -17.60415 -17.02347 -16.91436 -16.47749 -15.89447 -15.77707 -15.38169 -15.06612 -14.92222 -14.67654 -14.46168 -14.40453 -14.09485 -13.85893 -13.61185 -13.47791 -13.30200 -13.07716 -12.86269 -12.71459 -12.65034 -12.40395 -12.32211 -12.16258 -12.08541 -12.04680 -11.90689 -11.67766 -11.54950 -11.36494 -11.23457 -10.64766 -9.98471 -9.57181 -9.44352 -8.82361 -7.84325 -5.32336 -0.50732 0.48385 0.96286 1.36448 1.47709 1.49889 1.57565 1.79701 2.11471 2.50946 3.26562 3.45106 3.47827 3.71996 3.83757 3.99262 4.08318 4.09300 4.19023 4.21137 4.31197 4.36193 4.44065 4.53999 4.64607 4.68413 4.74384 4.83762 4.87364 4.95361 4.98728 4.99875 5.11103 5.16336 5.21332 5.26222 5.28680 5.31696 5.37426 5.45016 5.48434 5.63556 5.71241 6.30051 6.36122 6.93027 7.12708 7.82236 8.25986 9.18923 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.002646 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.022591 B =10580.715185 C =11219.821059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.051 4.051 4 C -0.197 4.197 5 C -0.161 4.161 6 C -0.052 4.052 7 C -0.302 4.302 8 C 0.596 3.404 9 O -0.583 6.583 10 N -0.610 5.610 11 C 0.096 3.904 12 C -0.135 4.135 13 C 0.169 3.831 14 H 0.078 0.922 15 N -0.600 5.600 16 C 0.175 3.825 17 C -0.266 4.266 18 H 0.072 0.928 19 C -0.048 4.048 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.290 1.290 23 H -0.294 1.294 24 H -0.268 1.268 25 C 0.097 3.903 26 S 0.249 5.751 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.028 0.972 43 H 0.249 0.751 44 H 0.059 0.941 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.317 -0.884 -15.409 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.317 4.317 5 C -0.191 4.191 6 C -0.087 4.087 7 C -0.422 4.422 8 C 0.387 3.613 9 O -0.466 6.466 10 N -0.342 5.342 11 C -0.027 4.027 12 C -0.176 4.176 13 C 0.060 3.940 14 H 0.096 0.904 15 N -0.321 5.321 16 C 0.031 3.969 17 C -0.396 4.396 18 H 0.090 0.910 19 C -0.243 4.243 20 N -0.580 5.580 21 Si 0.797 3.203 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.193 1.193 25 C -0.028 4.028 26 S 0.519 5.481 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.031 0.969 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.085 -0.818 -14.136 26.235 hybrid contribution 1.607 -0.275 -0.908 1.866 sum -20.478 -1.093 -15.044 25.434 Atomic orbital electron populations 1.21768 0.94357 1.02260 1.02479 1.21555 0.96740 0.95075 1.02436 1.20373 0.85276 0.98584 1.04763 1.25007 1.02680 1.05270 0.98707 1.20062 0.91356 1.06749 1.00886 1.20894 0.97357 0.95859 0.94567 1.24349 0.96382 1.22245 0.99231 1.17051 0.87883 0.75973 0.80438 1.90777 1.43820 1.53799 1.58173 1.48308 1.09302 1.71911 1.04650 1.22267 0.89923 1.03263 0.87253 1.23061 0.96964 1.02703 0.94843 1.21589 0.88454 0.97380 0.86621 0.90406 1.43957 1.43202 1.02985 1.41987 1.20560 0.98085 0.83030 0.95266 1.19536 1.27643 0.92729 0.99719 0.90989 1.25710 1.02636 0.98887 0.97113 1.70218 1.45270 1.23252 1.19249 0.85255 0.79036 0.78968 0.77085 1.21680 1.22027 1.19289 1.22754 0.84506 1.01203 0.94313 1.83220 0.91750 1.67032 1.06090 0.92196 0.91921 0.92341 0.91765 0.92251 0.89621 0.88399 0.81873 0.83676 0.89088 0.89280 0.91231 0.89072 0.96885 0.96510 0.95356 0.94164 0.92232 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.18 5.92 30.59 0.18 -0.99 16 3 C -0.05 -0.51 5.65 29.85 0.17 -0.34 16 4 C -0.20 -3.07 5.53 24.68 0.14 -2.94 16 5 C -0.16 -2.76 10.00 21.09 0.21 -2.55 16 6 C -0.05 -1.22 10.01 21.72 0.22 -1.00 16 7 C -0.30 -8.06 6.38 24.07 0.15 -7.91 16 8 C 0.60 20.56 7.82 86.42 0.68 21.23 16 9 O -0.58 -24.49 17.10 -4.36 -0.07 -24.56 16 10 N -0.61 -20.00 3.33 -815.64 -2.71 -22.71 16 11 C 0.10 2.51 5.17 86.73 0.45 2.96 16 12 C -0.14 -4.30 6.53 31.78 0.21 -4.09 16 13 C 0.17 6.60 3.57 46.56 0.17 6.77 16 14 H 0.08 3.06 7.93 -2.39 -0.02 3.04 16 15 N -0.60 -29.18 2.97 -694.06 -2.06 -31.24 16 16 C 0.18 8.49 7.89 127.77 1.01 9.50 16 17 C -0.27 -14.28 9.63 84.03 0.81 -13.47 16 18 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 19 C -0.05 -2.63 5.09 84.86 0.43 -2.20 16 20 N -0.93 -53.90 10.67 21.65 0.23 -53.66 16 21 Si 0.97 44.52 29.57 68.60 2.03 46.55 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 C 0.10 3.65 6.46 87.03 0.56 4.21 16 26 S 0.25 4.64 18.38 -56.49 -1.04 3.61 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.09 2.01 6.82 -2.39 -0.02 1.99 16 37 H 0.09 1.99 6.99 -2.38 -0.02 1.97 16 38 H 0.07 2.37 7.33 -2.38 -0.02 2.35 16 39 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.01 0.67 7.41 -2.39 -0.02 0.65 16 41 H 0.02 0.87 7.22 -2.39 -0.02 0.86 16 42 H 0.03 1.20 5.95 -2.38 -0.01 1.18 16 43 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.06 2.41 8.04 -2.39 -0.02 2.39 16 45 H 0.06 2.50 5.97 -2.39 -0.01 2.49 16 Total: -1.00 -67.35 369.94 3.44 -63.91 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.97 Total: 9.35 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.09 Total: 8.76 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -4.54 Total: -107.61 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.07 Total: -24.56 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.04 Total: 3.61 kcal Total: -67.35 3.44 -63.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971613538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.617 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds