Wall clock time and date at job start Tue Mar 31 2020 13:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99782 * 2 1 4 4 H 1.07997 * 119.99641 * 201.58539 * 3 2 1 5 5 C 1.38806 * 119.99975 * 21.58256 * 3 2 1 6 6 N 1.31618 * 120.00242 * 11.09682 * 5 3 2 7 7 Si 1.86800 * 120.00112 * 191.09082 * 5 3 2 8 8 H 1.48508 * 109.46889 * 60.00484 * 7 5 3 9 9 H 1.48497 * 109.47276 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47405 * 300.00339 * 7 5 3 11 11 C 1.46499 * 119.99917 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.87995 * 180.70043 * 11 2 1 13 13 C 1.55154 * 111.00117 * 304.57456 * 11 2 1 14 14 C 1.54324 * 102.94019 * 153.61875 * 13 11 2 15 15 N 1.47025 * 107.26977 * 337.80871 * 14 13 11 16 16 C 1.34776 * 125.64803 * 178.98587 * 15 14 13 17 17 O 1.21283 * 120.00230 * 174.69109 * 16 15 14 18 18 C 1.50711 * 120.00173 * 354.68813 * 16 15 14 19 19 C 1.53000 * 109.47176 * 293.99674 * 18 16 15 20 20 C 1.53001 * 109.46588 * 53.99240 * 18 16 15 21 21 C 1.50696 * 109.47373 * 173.99087 * 18 16 15 22 22 C 1.33385 * 125.20361 * 180.02562 * 21 18 16 23 23 C 1.38430 * 114.92004 * 179.97438 * 22 21 18 24 24 C 1.33388 * 114.91947 * 359.97438 * 23 22 21 25 25 S 1.75879 * 109.59460 * 359.75804 * 24 23 22 26 26 C 1.47419 * 108.70301 * 358.93978 * 15 14 13 27 27 H 1.09000 * 109.47173 * 275.20467 * 1 2 3 28 28 H 1.09000 * 109.47429 * 35.20894 * 1 2 3 29 29 H 1.09010 * 109.47232 * 155.21342 * 1 2 3 30 30 H 0.96997 * 120.00449 * 179.97438 * 6 5 3 31 31 H 1.08997 * 110.72391 * 271.98010 * 13 11 2 32 32 H 1.08996 * 110.72041 * 35.25960 * 13 11 2 33 33 H 1.09008 * 109.88235 * 97.22493 * 14 13 11 34 34 H 1.08999 * 109.88498 * 218.23839 * 14 13 11 35 35 H 1.08992 * 109.47493 * 63.48227 * 19 18 16 36 36 H 1.08993 * 109.47015 * 183.48996 * 19 18 16 37 37 H 1.09001 * 109.46783 * 303.48766 * 19 18 16 38 38 H 1.09001 * 109.47335 * 43.49753 * 20 18 16 39 39 H 1.09003 * 109.46710 * 163.49723 * 20 18 16 40 40 H 1.08998 * 109.47487 * 283.49481 * 20 18 16 41 41 H 1.08002 * 122.53858 * 359.95381 * 22 21 18 42 42 H 1.07995 * 122.53586 * 180.02562 * 23 22 21 43 43 H 1.08002 * 125.20230 * 180.02562 * 24 23 22 44 44 H 1.08992 * 110.36845 * 265.28695 * 26 15 14 45 45 H 1.09006 * 110.36575 * 142.96868 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1728 1.2187 -0.3441 5 6 1.5285 2.3459 0.4422 6 7 0.3693 2.2766 1.0616 7 14 2.3381 4.0053 0.1584 8 1 2.5153 4.2267 -1.2994 9 1 1.4792 5.0778 0.7215 10 1 3.6634 4.0305 0.8277 11 6 2.1975 -1.2687 -0.0006 12 1 3.2736 -1.0960 0.0120 13 6 1.7636 -2.1618 1.1917 14 6 2.0567 -3.5879 0.6798 15 7 2.0790 -3.5284 -0.7890 16 6 2.3226 -4.5663 -1.6136 17 8 2.2212 -4.4242 -2.8138 18 6 2.7209 -5.9037 -1.0442 19 6 4.0917 -5.7852 -0.3750 20 6 1.6847 -6.3464 -0.0093 21 6 2.7897 -6.9215 -2.1534 22 6 3.1123 -8.2065 -1.9989 23 6 3.1088 -8.9530 -3.1647 24 6 2.7827 -8.2743 -4.2657 25 16 2.4484 -6.5988 -3.8483 26 6 1.7898 -2.1457 -1.2106 27 1 -0.3633 0.0932 1.0234 28 1 -0.3634 0.8396 -0.5925 29 1 -0.3634 -0.9331 -0.4309 30 1 -0.0646 3.0871 1.3709 31 1 2.3596 -1.9397 2.0768 32 1 0.7009 -2.0376 1.3999 33 1 3.0246 -3.9237 1.0520 34 1 1.2745 -4.2696 1.0136 35 1 4.0268 -5.0954 0.4664 36 1 4.4075 -6.7653 -0.0178 37 1 4.8173 -5.4104 -1.0969 38 1 0.6828 -6.1523 -0.3923 39 1 1.7988 -7.4127 0.1859 40 1 1.8342 -5.7897 0.9158 41 1 3.3581 -8.6322 -1.0372 42 1 3.3508 -10.0054 -3.1812 43 1 2.7279 -8.6910 -5.2606 44 1 0.7273 -2.0284 -1.4234 45 1 2.3840 -1.8839 -2.0862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972075888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:14 Heat of formation + Delta-G solvation = 38.473356 kcal Electronic energy + Delta-G solvation = -25677.892181 eV Core-core repulsion = 22209.511700 eV Total energy + Delta-G solvation = -3468.380482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57132 -38.17176 -37.42863 -35.28506 -34.62866 -31.63888 -29.88400 -28.83183 -27.79508 -27.42877 -26.11359 -25.10619 -23.84656 -22.54671 -21.71326 -19.56505 -19.37133 -18.75121 -17.12917 -16.99706 -16.50120 -15.94276 -15.29360 -15.11795 -14.90901 -14.47775 -13.93644 -13.90245 -13.46994 -13.17320 -13.10908 -12.82801 -12.65300 -12.56629 -12.46489 -12.31357 -12.25195 -11.97012 -11.73064 -11.46011 -11.39984 -11.12638 -10.93893 -10.79545 -10.58405 -10.51488 -10.44652 -10.29353 -9.92002 -9.89828 -9.31602 -8.64613 -8.60188 -8.47108 -8.19078 -6.87586 -5.80033 -3.27165 1.10179 1.85211 2.30766 2.60189 2.80054 3.11468 3.35158 3.40900 3.42042 4.26584 4.41228 4.45360 4.83243 4.84462 4.94454 5.11973 5.13446 5.21544 5.31973 5.40009 5.45599 5.47103 5.54329 5.56899 5.61332 5.68573 5.71388 5.79494 5.92338 5.96946 6.01993 6.15306 6.21257 6.31990 6.35116 6.44719 6.54113 6.57104 6.73324 6.80909 7.33283 7.63153 7.66346 7.74484 8.13182 8.30483 9.14829 9.76646 10.24128 11.24466 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028520 B = 0.002878 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.539901 B = 9728.096131 C =10103.322591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.153 4.153 14 C 0.090 3.910 15 N -0.601 5.601 16 C 0.531 3.469 17 O -0.529 6.529 18 C -0.005 4.005 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.183 4.183 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.276 4.276 25 S 0.228 5.772 26 C 0.084 3.916 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.000 1.000 30 H 0.254 0.746 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.152 0.848 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -20.544 -1.700 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.306 5.306 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.193 4.193 14 C -0.033 4.033 15 N -0.332 5.332 16 C 0.319 3.681 17 O -0.408 6.408 18 C -0.010 4.010 19 C -0.196 4.196 20 C -0.205 4.205 21 C -0.301 4.301 22 C -0.170 4.170 23 C -0.177 4.177 24 C -0.412 4.412 25 S 0.494 5.506 26 C -0.040 4.040 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.169 0.831 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.577 -19.042 -3.172 19.633 hybrid contribution 0.764 -0.504 0.769 1.195 sum 4.341 -19.546 -2.403 20.166 Atomic orbital electron populations 1.20837 0.82265 0.95607 0.99635 1.43814 1.01952 0.99800 1.85019 1.19191 0.97599 0.85094 1.37134 0.91222 1.25008 0.97510 0.98550 0.98297 1.70057 1.17096 1.27250 1.40768 0.86287 0.78488 0.83455 0.77999 1.20976 1.21586 1.20889 1.21388 0.96367 0.85843 0.90069 0.90374 1.23265 1.03019 0.92415 1.00621 1.22539 1.01204 0.99714 0.79855 1.48293 1.68221 1.09497 1.07225 1.20110 0.76904 0.84982 0.86109 1.90420 1.53975 1.81716 1.14737 1.19128 0.98406 0.89935 0.93571 1.21964 0.93687 1.03194 1.00796 1.22194 0.97870 1.02520 0.97915 1.24209 1.09926 0.97613 0.98384 1.19840 1.05097 0.92578 0.99508 1.19938 1.05185 1.00667 0.91860 1.26659 1.08771 1.03283 1.02468 1.85601 1.64285 1.01597 0.99100 1.23066 1.01435 0.79148 1.00349 0.94937 0.93541 0.98185 0.93577 0.90400 0.90439 0.91254 0.91044 0.90789 0.91023 0.91807 0.91890 0.91116 0.90219 0.85064 0.85644 0.83058 0.91127 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.77 7.65 59.85 0.46 4.22 16 2 N -0.59 -13.83 2.96 -171.04 -0.51 -14.34 16 3 C -0.26 -6.87 9.64 -15.06 -0.15 -7.01 16 4 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 5 C 0.00 0.13 5.14 -17.43 -0.09 0.04 16 6 N -0.91 -25.48 10.52 55.49 0.58 -24.90 16 7 Si 0.91 21.30 29.57 -169.99 -5.03 16.28 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.17 3.29 3.54 -65.79 -0.23 3.06 16 12 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 13 C -0.15 -2.37 6.52 -24.90 -0.16 -2.54 16 14 C 0.09 1.10 5.00 -3.06 -0.02 1.09 16 15 N -0.60 -8.95 3.32 -170.52 -0.57 -9.51 16 16 C 0.53 8.02 6.50 -10.98 -0.07 7.95 16 17 O -0.53 -9.50 13.19 5.56 0.07 -9.43 16 18 C -0.01 -0.06 0.64 -156.81 -0.10 -0.16 16 19 C -0.14 -1.36 8.19 37.16 0.30 -1.05 16 20 C -0.15 -1.41 7.56 37.16 0.28 -1.13 16 21 C -0.18 -2.29 5.11 -36.01 -0.18 -2.48 16 22 C -0.14 -1.52 9.01 -41.21 -0.37 -1.89 16 23 C -0.15 -1.58 10.18 -41.21 -0.42 -2.00 16 24 C -0.28 -3.17 11.23 29.04 0.33 -2.84 16 25 S 0.23 3.14 19.61 -107.50 -2.11 1.03 16 26 C 0.08 1.49 6.44 -2.54 -0.02 1.47 16 27 H 0.03 0.82 7.38 -51.93 -0.38 0.43 16 28 H 0.05 1.19 7.19 -51.93 -0.37 0.82 16 29 H 0.00 -0.01 6.25 -51.92 -0.32 -0.33 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 33 H 0.07 0.72 5.56 -51.92 -0.29 0.43 16 34 H 0.07 0.76 5.86 -51.93 -0.30 0.46 16 35 H 0.07 0.66 5.25 -51.93 -0.27 0.38 16 36 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 39 H 0.07 0.58 7.40 -51.93 -0.38 0.19 16 40 H 0.08 0.65 5.03 -51.93 -0.26 0.39 16 41 H 0.13 1.15 7.84 -52.49 -0.41 0.73 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 44 H 0.07 1.33 6.23 -51.93 -0.32 1.01 16 45 H 0.07 1.37 8.09 -51.93 -0.42 0.95 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -29.78 354.38 -9.24 -39.02 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.59 Total: -0.23 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.44 Total: -3.26 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.49 Total: -48.75 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.11 Total: 1.03 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.78 -9.24 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972075888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.497 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds