Wall clock time and date at job start Tue Mar 31 2020 13:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99782 * 2 1 4 4 H 1.07997 * 119.99641 * 201.58539 * 3 2 1 5 5 C 1.38806 * 119.99975 * 21.58256 * 3 2 1 6 6 N 1.31618 * 120.00242 * 11.09682 * 5 3 2 7 7 Si 1.86800 * 120.00112 * 191.09082 * 5 3 2 8 8 H 1.48508 * 109.46889 * 60.00484 * 7 5 3 9 9 H 1.48497 * 109.47276 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47405 * 300.00339 * 7 5 3 11 11 C 1.46499 * 119.99917 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.87995 * 180.70043 * 11 2 1 13 13 C 1.55154 * 111.00117 * 304.57456 * 11 2 1 14 14 C 1.54324 * 102.94019 * 153.61875 * 13 11 2 15 15 N 1.47025 * 107.26977 * 337.80871 * 14 13 11 16 16 C 1.34776 * 125.64803 * 178.98587 * 15 14 13 17 17 O 1.21283 * 120.00230 * 174.69109 * 16 15 14 18 18 C 1.50711 * 120.00173 * 354.68813 * 16 15 14 19 19 C 1.53000 * 109.47176 * 293.99674 * 18 16 15 20 20 C 1.53001 * 109.46588 * 53.99240 * 18 16 15 21 21 C 1.50696 * 109.47373 * 173.99087 * 18 16 15 22 22 C 1.33385 * 125.20361 * 180.02562 * 21 18 16 23 23 C 1.38430 * 114.92004 * 179.97438 * 22 21 18 24 24 C 1.33388 * 114.91947 * 359.97438 * 23 22 21 25 25 S 1.75879 * 109.59460 * 359.75804 * 24 23 22 26 26 C 1.47419 * 108.70301 * 358.93978 * 15 14 13 27 27 H 1.09000 * 109.47173 * 275.20467 * 1 2 3 28 28 H 1.09000 * 109.47429 * 35.20894 * 1 2 3 29 29 H 1.09010 * 109.47232 * 155.21342 * 1 2 3 30 30 H 0.96997 * 120.00449 * 179.97438 * 6 5 3 31 31 H 1.08997 * 110.72391 * 271.98010 * 13 11 2 32 32 H 1.08996 * 110.72041 * 35.25960 * 13 11 2 33 33 H 1.09008 * 109.88235 * 97.22493 * 14 13 11 34 34 H 1.08999 * 109.88498 * 218.23839 * 14 13 11 35 35 H 1.08992 * 109.47493 * 63.48227 * 19 18 16 36 36 H 1.08993 * 109.47015 * 183.48996 * 19 18 16 37 37 H 1.09001 * 109.46783 * 303.48766 * 19 18 16 38 38 H 1.09001 * 109.47335 * 43.49753 * 20 18 16 39 39 H 1.09003 * 109.46710 * 163.49723 * 20 18 16 40 40 H 1.08998 * 109.47487 * 283.49481 * 20 18 16 41 41 H 1.08002 * 122.53858 * 359.95381 * 22 21 18 42 42 H 1.07995 * 122.53586 * 180.02562 * 23 22 21 43 43 H 1.08002 * 125.20230 * 180.02562 * 24 23 22 44 44 H 1.08992 * 110.36845 * 265.28695 * 26 15 14 45 45 H 1.09006 * 110.36575 * 142.96868 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1728 1.2187 -0.3441 5 6 1.5285 2.3459 0.4422 6 7 0.3693 2.2766 1.0616 7 14 2.3381 4.0053 0.1584 8 1 2.5153 4.2267 -1.2994 9 1 1.4792 5.0778 0.7215 10 1 3.6634 4.0305 0.8277 11 6 2.1975 -1.2687 -0.0006 12 1 3.2736 -1.0960 0.0120 13 6 1.7636 -2.1618 1.1917 14 6 2.0567 -3.5879 0.6798 15 7 2.0790 -3.5284 -0.7890 16 6 2.3226 -4.5663 -1.6136 17 8 2.2212 -4.4242 -2.8138 18 6 2.7209 -5.9037 -1.0442 19 6 4.0917 -5.7852 -0.3750 20 6 1.6847 -6.3464 -0.0093 21 6 2.7897 -6.9215 -2.1534 22 6 3.1123 -8.2065 -1.9989 23 6 3.1088 -8.9530 -3.1647 24 6 2.7827 -8.2743 -4.2657 25 16 2.4484 -6.5988 -3.8483 26 6 1.7898 -2.1457 -1.2106 27 1 -0.3633 0.0932 1.0234 28 1 -0.3634 0.8396 -0.5925 29 1 -0.3634 -0.9331 -0.4309 30 1 -0.0646 3.0871 1.3709 31 1 2.3596 -1.9397 2.0768 32 1 0.7009 -2.0376 1.3999 33 1 3.0246 -3.9237 1.0520 34 1 1.2745 -4.2696 1.0136 35 1 4.0268 -5.0954 0.4664 36 1 4.4075 -6.7653 -0.0178 37 1 4.8173 -5.4104 -1.0969 38 1 0.6828 -6.1523 -0.3923 39 1 1.7988 -7.4127 0.1859 40 1 1.8342 -5.7897 0.9158 41 1 3.3581 -8.6322 -1.0372 42 1 3.3508 -10.0054 -3.1812 43 1 2.7279 -8.6910 -5.2606 44 1 0.7273 -2.0284 -1.4234 45 1 2.3840 -1.8839 -2.0862 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972075888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:13 Heat of formation + Delta-G solvation = 22.039259 kcal Electronic energy + Delta-G solvation = -25678.604817 eV Core-core repulsion = 22209.511700 eV Total energy + Delta-G solvation = -3469.093118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70268 -39.34501 -38.57506 -36.71854 -35.83659 -33.38637 -31.33417 -29.92543 -28.89550 -28.28072 -28.08093 -26.17304 -25.14209 -24.01956 -22.72869 -21.00610 -20.62119 -19.60413 -18.96547 -18.06281 -17.67129 -17.44358 -16.48557 -16.22834 -16.13841 -15.78762 -15.30016 -15.06241 -14.76767 -14.48959 -14.31461 -14.26928 -14.04023 -13.60136 -13.46853 -13.33617 -13.20857 -13.11153 -12.89442 -12.74958 -12.70537 -12.42103 -12.38813 -12.25824 -12.13923 -12.09780 -12.02725 -11.76768 -11.45315 -11.36669 -10.64832 -10.40651 -9.74020 -9.43971 -9.21552 -8.81162 -7.83875 -5.32211 0.22330 0.92575 1.35933 1.46717 1.49298 1.49830 1.55775 1.96413 1.97377 2.50874 3.26048 3.33333 3.51685 3.55854 3.91019 3.97522 4.02631 4.07861 4.15987 4.27979 4.33932 4.39535 4.55467 4.69409 4.70022 4.74084 4.75765 4.80746 4.82610 4.88827 4.97426 5.02928 5.15953 5.21934 5.23158 5.27782 5.32077 5.33125 5.43136 5.49415 5.62672 5.72642 5.73634 6.30291 6.47895 6.97824 7.13414 7.83611 8.26666 9.18885 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028520 B = 0.002878 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.539901 B = 9728.096131 C =10103.322591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.268 4.268 4 H 0.072 0.928 5 C -0.048 4.048 6 N -0.935 5.935 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.294 1.294 10 H -0.273 1.273 11 C 0.167 3.833 12 H 0.076 0.924 13 C -0.143 4.143 14 C 0.096 3.904 15 N -0.602 5.602 16 C 0.522 3.478 17 O -0.564 6.564 18 C 0.002 3.998 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.191 4.191 22 C -0.129 4.129 23 C -0.146 4.146 24 C -0.273 4.273 25 S 0.142 5.858 26 C 0.097 3.903 27 H 0.012 0.988 28 H 0.014 0.986 29 H 0.025 0.975 30 H 0.249 0.751 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.167 0.833 44 H 0.054 0.946 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 -23.511 -0.083 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.324 5.324 3 C -0.398 4.398 4 H 0.089 0.911 5 C -0.243 4.243 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.220 1.220 10 H -0.199 1.199 11 C 0.058 3.942 12 H 0.094 0.906 13 C -0.182 4.182 14 C -0.026 4.026 15 N -0.333 5.333 16 C 0.312 3.688 17 O -0.446 6.446 18 C -0.003 4.003 19 C -0.194 4.194 20 C -0.203 4.203 21 C -0.309 4.309 22 C -0.160 4.160 23 C -0.176 4.176 24 C -0.408 4.408 25 S 0.407 5.593 26 C -0.028 4.028 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.181 0.819 42 H 0.171 0.829 43 H 0.185 0.815 44 H 0.073 0.927 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.083 -22.061 -1.543 22.692 hybrid contribution 0.341 0.288 0.177 0.480 sum 5.424 -21.773 -1.366 22.480 Atomic orbital electron populations 1.20502 0.82617 0.95427 0.97885 1.43960 1.02037 1.00894 1.85471 1.19512 0.97742 0.86412 1.36102 0.91069 1.25716 0.98258 1.01595 0.98773 1.70210 1.18364 1.27475 1.42125 0.85334 0.77799 0.79578 0.77661 1.20931 1.22038 1.19891 1.21522 0.95789 0.84720 0.92149 0.90624 1.23096 1.02276 0.93534 0.99339 1.22700 1.03940 0.97974 0.77947 1.48321 1.68368 1.08185 1.08419 1.20918 0.76061 0.86092 0.85748 1.90444 1.55039 1.82606 1.16470 1.19191 1.00104 0.87262 0.93755 1.22007 0.91849 1.05038 1.00477 1.22233 0.96192 1.04217 0.97612 1.24335 1.11021 0.98576 0.96967 1.20200 1.03247 0.91687 1.00858 1.20342 1.03898 1.01961 0.91417 1.26746 1.08904 1.01367 1.03773 1.85912 1.66469 1.04687 1.02204 1.22633 0.99916 0.81143 0.99089 0.96957 0.96745 0.95698 0.94197 0.89388 0.91701 0.88086 0.88373 0.89522 0.88337 0.93512 0.93367 0.88921 0.88328 0.81900 0.82860 0.81511 0.92743 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 7.65 127.77 0.98 9.69 16 2 N -0.60 -28.97 2.96 -695.04 -2.06 -31.03 16 3 C -0.27 -14.31 9.64 84.03 0.81 -13.50 16 4 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 5 C -0.05 -2.63 5.14 84.86 0.44 -2.20 16 6 N -0.94 -53.91 10.52 21.65 0.23 -53.68 16 7 Si 0.97 44.40 29.57 68.60 2.03 46.42 16 8 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 C 0.17 6.29 3.54 46.38 0.16 6.46 16 12 H 0.08 2.87 7.94 -2.39 -0.02 2.85 16 13 C -0.14 -4.18 6.52 31.78 0.21 -3.98 16 14 C 0.10 2.06 5.00 86.73 0.43 2.49 16 15 N -0.60 -17.21 3.32 -811.79 -2.70 -19.90 16 16 C 0.52 15.39 6.50 87.66 0.57 15.96 16 17 O -0.56 -20.87 13.19 -3.04 -0.04 -20.91 16 18 C 0.00 0.04 0.64 -53.67 -0.03 0.01 16 19 C -0.14 -2.16 8.19 71.98 0.59 -1.57 16 20 C -0.14 -2.20 7.56 71.98 0.54 -1.66 16 21 C -0.19 -4.40 5.11 24.59 0.13 -4.28 16 22 C -0.13 -2.34 9.01 21.22 0.19 -2.15 16 23 C -0.15 -2.69 10.18 21.22 0.22 -2.48 16 24 C -0.27 -5.88 11.23 66.72 0.75 -5.13 16 25 S 0.14 3.96 19.61 -56.49 -1.11 2.86 16 26 C 0.10 3.49 6.44 86.85 0.56 4.05 16 27 H 0.01 0.63 7.38 -2.39 -0.02 0.62 16 28 H 0.01 0.75 7.19 -2.39 -0.02 0.73 16 29 H 0.02 1.05 6.25 -2.38 -0.01 1.03 16 30 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.09 7.16 -2.39 -0.02 2.08 16 33 H 0.10 1.60 5.56 -2.38 -0.01 1.59 16 34 H 0.10 1.67 5.86 -2.39 -0.01 1.66 16 35 H 0.09 1.13 5.25 -2.39 -0.01 1.12 16 36 H 0.10 1.06 7.79 -2.39 -0.02 1.04 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.89 8.03 -2.39 -0.02 0.87 16 39 H 0.09 1.03 7.40 -2.39 -0.02 1.02 16 40 H 0.10 1.10 5.03 -2.39 -0.01 1.09 16 41 H 0.16 1.91 7.84 -2.91 -0.02 1.89 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 44 H 0.05 2.11 6.23 -2.39 -0.01 2.10 16 45 H 0.05 2.07 8.09 -2.38 -0.02 2.06 16 Total: -1.00 -67.90 354.38 3.88 -64.02 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.99 Total: 10.50 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.54 Total: 1.72 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -4.53 Total: -104.61 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.04 Total: -20.91 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -1.11 Total: 2.86 kcal Total: -67.90 3.88 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972075888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.057 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds