Wall clock time and date at job start Tue Mar 31 2020 13:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46942 * 2 1 4 4 C 1.33822 * 124.52276 * 90.00526 * 3 2 1 5 5 C 1.37470 * 115.09984 * 179.76968 * 4 3 2 6 6 C 1.36647 * 113.29962 * 0.44588 * 5 4 3 7 7 C 1.46581 * 125.46085 * 179.83825 * 6 5 4 8 8 O 1.21704 * 120.00081 * 359.72536 * 7 6 5 9 9 N 1.34783 * 120.00200 * 179.71903 * 7 6 5 10 10 C 1.46495 * 120.00206 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.88807 * 322.58077 * 10 9 7 12 12 C 1.54914 * 111.00061 * 86.45660 * 10 9 7 13 13 N 1.47426 * 104.82992 * 81.10625 * 12 10 9 14 14 C 1.36936 * 125.64483 * 204.16378 * 13 12 10 15 15 H 1.08004 * 119.99836 * 179.97438 * 14 13 12 16 16 C 1.38815 * 120.00358 * 359.95842 * 14 13 12 17 17 N 1.31619 * 119.99732 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00198 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46977 * 60.00100 * 18 16 14 20 20 H 1.48497 * 109.47073 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46946 * 300.00062 * 18 16 14 22 22 C 1.47018 * 108.70517 * 24.12623 * 13 12 10 23 23 C 1.54325 * 107.40412 * 358.86539 * 22 13 12 24 24 C 1.53004 * 110.72125 * 96.24436 * 23 22 13 25 25 C 1.52995 * 110.72304 * 219.52316 * 23 22 13 26 26 S 1.70615 * 124.52385 * 270.02143 * 3 2 1 27 27 H 1.09000 * 109.47010 * 300.00050 * 1 2 3 28 28 H 1.09008 * 109.47165 * 59.99767 * 1 2 3 29 29 H 1.08994 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47010 * 239.99950 * 2 1 3 31 31 H 1.08994 * 109.47022 * 120.00075 * 2 1 3 32 32 H 1.07994 * 122.45073 * 0.03202 * 4 3 2 33 33 H 1.08004 * 123.35653 * 180.27005 * 5 4 3 34 34 H 0.96998 * 119.99535 * 0.02562 * 9 7 6 35 35 H 1.08999 * 110.37121 * 322.26360 * 12 10 9 36 36 H 1.09003 * 110.36718 * 199.94264 * 12 10 9 37 37 H 0.96996 * 119.99954 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.88241 * 118.36067 * 22 13 12 39 39 H 1.09000 * 109.88049 * 239.37196 * 22 13 12 40 40 H 1.08999 * 109.47052 * 61.45720 * 24 23 22 41 41 H 1.08993 * 109.46847 * 181.45696 * 24 23 22 42 42 H 1.09005 * 109.46970 * 301.45810 * 24 23 22 43 43 H 1.08999 * 109.47083 * 58.54334 * 25 23 22 44 44 H 1.09002 * 109.47293 * 178.54343 * 25 23 22 45 45 H 1.09000 * 109.47062 * 298.54438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7419 3.4128 0.8775 6 6 2.8457 3.7237 -0.4491 7 6 3.2999 5.0088 -0.9883 8 8 3.6181 5.9078 -0.2320 9 7 3.3654 5.1950 -2.3216 10 6 3.8188 6.4795 -2.8605 11 1 3.4548 7.3068 -2.2512 12 6 5.3627 6.5168 -2.9818 13 7 5.6598 5.8046 -4.2380 14 6 6.8406 5.1815 -4.5421 15 1 6.9596 4.6846 -5.4936 16 6 7.8849 5.1887 -3.6275 17 7 7.7398 5.7941 -2.4678 18 14 9.4955 4.3380 -4.0420 19 1 10.0811 4.9535 -5.2600 20 1 10.4416 4.4897 -2.9076 21 1 9.2442 2.8954 -4.2882 22 6 4.4779 5.8734 -5.1098 23 6 3.3829 6.6445 -4.3430 24 6 3.3787 8.1210 -4.7442 25 6 2.0095 6.0135 -4.5802 26 16 2.3541 2.3326 -1.4057 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1449 1.7373 2.0965 33 1 2.9910 4.1027 1.6702 34 1 3.1115 4.4786 -2.9243 35 1 5.8222 6.0037 -2.1370 36 1 5.7141 7.5471 -3.0377 37 1 8.4695 5.7994 -1.8289 38 1 4.7268 6.4008 -6.0307 39 1 4.1293 4.8670 -5.3417 40 1 3.1604 8.2076 -5.8086 41 1 2.6165 8.6505 -4.1727 42 1 4.3562 8.5565 -4.5372 43 1 2.0275 4.9723 -4.2583 44 1 1.2564 6.5572 -4.0098 45 1 1.7661 6.0614 -5.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974783246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:32 Heat of formation + Delta-G solvation = 12.681080 kcal Electronic energy + Delta-G solvation = -25642.509403 eV Core-core repulsion = 22173.010484 eV Total energy + Delta-G solvation = -3469.498919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.71702 -38.35577 -37.38220 -33.82873 -33.81213 -32.99928 -30.68779 -29.17185 -27.90518 -26.80479 -25.60736 -25.15417 -23.37157 -22.42888 -21.35654 -19.97578 -19.37204 -18.37056 -17.66475 -16.67955 -16.18836 -15.60355 -15.10721 -14.72652 -14.41824 -14.32820 -14.00174 -13.76635 -13.69424 -13.44124 -13.19692 -12.88898 -12.63933 -12.34280 -12.21770 -11.98308 -11.86957 -11.74773 -11.67246 -11.30533 -11.28029 -11.15051 -10.99013 -10.81458 -10.74370 -10.39451 -10.21293 -9.93794 -9.80008 -9.66480 -9.54568 -8.67634 -8.62813 -8.53339 -8.30414 -6.78477 -5.59564 -3.02893 0.62667 1.52191 1.94851 2.50820 3.42157 3.46237 3.48512 3.53972 3.70812 4.51278 4.51573 4.80320 4.97057 5.02163 5.15573 5.23624 5.25285 5.29196 5.42333 5.51309 5.54823 5.59005 5.63889 5.73419 5.79788 5.87895 5.91436 6.02058 6.04768 6.10816 6.16922 6.23886 6.27750 6.41913 6.43412 6.50072 6.62010 6.70779 6.75139 6.98826 7.50967 7.64638 7.89150 8.01174 8.42670 8.66137 9.25039 9.86720 10.50834 11.42941 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.004408 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.251029 B = 6350.142983 C = 7497.506542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.202 4.202 4 C -0.151 4.151 5 C -0.062 4.062 6 C -0.249 4.249 7 C 0.588 3.412 8 O -0.531 6.531 9 N -0.697 5.697 10 C 0.125 3.875 11 H 0.087 0.913 12 C 0.146 3.854 13 N -0.600 5.600 14 C -0.227 4.227 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.916 5.916 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.143 3.857 23 C -0.088 4.088 24 C -0.128 4.128 25 C -0.132 4.132 26 S 0.198 5.802 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.393 0.607 35 H 0.114 0.886 36 H 0.022 0.978 37 H 0.253 0.747 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.580 -7.793 2.372 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.321 4.321 4 C -0.182 4.182 5 C -0.095 4.095 6 C -0.370 4.370 7 C 0.373 3.627 8 O -0.410 6.410 9 N -0.347 5.347 10 C 0.020 3.980 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.326 5.326 14 C -0.355 4.355 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.564 5.564 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.017 3.983 23 C -0.089 4.089 24 C -0.185 4.185 25 C -0.190 4.190 26 S 0.466 5.534 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.228 0.772 35 H 0.132 0.868 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.218 -7.458 1.420 17.907 hybrid contribution 1.002 -0.540 1.056 1.553 sum -15.216 -7.998 2.477 17.367 Atomic orbital electron populations 1.21799 0.94247 1.01948 1.02560 1.20120 0.96188 0.89596 1.03432 1.24196 1.07982 1.02008 0.97958 1.19902 1.04736 0.94206 0.99337 1.20711 0.97228 0.96251 0.95292 1.24746 1.14955 0.99345 0.97932 1.16847 0.77833 0.85451 0.82573 1.90811 1.49426 1.42681 1.58050 1.45706 1.66702 1.16722 1.05581 1.22601 0.98987 0.84221 0.92212 0.89506 1.22320 0.87267 0.96055 0.92319 1.44440 1.10606 1.63240 1.14362 1.18975 0.88822 1.27098 1.00619 0.90627 1.24788 0.98319 1.00746 0.96518 1.69791 1.31530 1.47442 1.07633 0.86202 0.83334 0.79176 0.77045 1.21254 1.21603 1.21247 1.21400 0.87418 0.96039 0.93449 1.21890 0.95100 0.96533 0.95366 1.21682 1.02261 0.94048 1.00552 1.21726 0.95939 1.00029 1.01264 1.82996 1.59723 1.02926 1.07744 0.92246 0.92381 0.92046 0.90662 0.89967 0.84189 0.83074 0.77211 0.86811 0.96061 0.93627 0.95800 0.96176 0.92615 0.93058 0.91700 0.93121 0.92696 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.70 16 2 C -0.05 -0.46 6.36 -27.88 -0.18 -0.63 16 3 C -0.20 -2.30 5.53 -35.86 -0.20 -2.50 16 4 C -0.15 -1.80 10.00 -41.41 -0.41 -2.22 16 5 C -0.06 -0.91 10.01 -40.44 -0.40 -1.31 16 6 C -0.25 -4.08 6.45 -36.79 -0.24 -4.32 16 7 C 0.59 11.57 7.78 -12.89 -0.10 11.47 16 8 O -0.53 -12.19 16.59 5.18 0.09 -12.10 16 9 N -0.70 -13.02 4.68 -52.93 -0.25 -13.27 16 10 C 0.12 2.48 2.57 -65.65 -0.17 2.31 16 11 H 0.09 1.73 7.63 -51.93 -0.40 1.34 16 12 C 0.15 3.65 5.27 -2.53 -0.01 3.63 16 13 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 14 C -0.23 -6.32 10.27 -15.06 -0.15 -6.47 16 15 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 17 N -0.92 -27.47 10.09 55.49 0.56 -26.91 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.14 2.89 6.40 -3.07 -0.02 2.87 16 23 C -0.09 -1.48 0.81 -152.54 -0.12 -1.60 16 24 C -0.13 -1.94 8.44 37.16 0.31 -1.63 16 25 C -0.13 -1.77 8.17 37.15 0.30 -1.47 16 26 S 0.20 2.57 22.10 -107.50 -2.38 0.19 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 34 H 0.39 6.67 5.93 -40.82 -0.24 6.42 16 35 H 0.11 3.33 5.87 -51.93 -0.30 3.02 16 36 H 0.02 0.57 7.73 -51.93 -0.40 0.17 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 39 H 0.02 0.40 7.82 -51.93 -0.41 0.00 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.11 7.46 -51.93 -0.39 0.73 16 43 H 0.05 0.66 6.21 -51.93 -0.32 0.34 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -32.51 373.20 -10.14 -42.65 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.06 Total: 5.04 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.12 Total: -2.86 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.26 Total: -55.93 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.38 Total: 0.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.51 -10.14 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974783246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.333 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds