Wall clock time and date at job start Tue Mar 31 2020 13:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46942 * 2 1 4 4 C 1.33822 * 124.52276 * 90.00526 * 3 2 1 5 5 C 1.37470 * 115.09984 * 179.76968 * 4 3 2 6 6 C 1.36647 * 113.29962 * 0.44588 * 5 4 3 7 7 C 1.46581 * 125.46085 * 179.83825 * 6 5 4 8 8 O 1.21704 * 120.00081 * 359.72536 * 7 6 5 9 9 N 1.34783 * 120.00200 * 179.71903 * 7 6 5 10 10 C 1.46495 * 120.00206 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.88807 * 322.58077 * 10 9 7 12 12 C 1.54914 * 111.00061 * 86.45660 * 10 9 7 13 13 N 1.47426 * 104.82992 * 81.10625 * 12 10 9 14 14 C 1.36936 * 125.64483 * 204.16378 * 13 12 10 15 15 H 1.08004 * 119.99836 * 179.97438 * 14 13 12 16 16 C 1.38815 * 120.00358 * 359.95842 * 14 13 12 17 17 N 1.31619 * 119.99732 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00198 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46977 * 60.00100 * 18 16 14 20 20 H 1.48497 * 109.47073 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46946 * 300.00062 * 18 16 14 22 22 C 1.47018 * 108.70517 * 24.12623 * 13 12 10 23 23 C 1.54325 * 107.40412 * 358.86539 * 22 13 12 24 24 C 1.53004 * 110.72125 * 96.24436 * 23 22 13 25 25 C 1.52995 * 110.72304 * 219.52316 * 23 22 13 26 26 S 1.70615 * 124.52385 * 270.02143 * 3 2 1 27 27 H 1.09000 * 109.47010 * 300.00050 * 1 2 3 28 28 H 1.09008 * 109.47165 * 59.99767 * 1 2 3 29 29 H 1.08994 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47010 * 239.99950 * 2 1 3 31 31 H 1.08994 * 109.47022 * 120.00075 * 2 1 3 32 32 H 1.07994 * 122.45073 * 0.03202 * 4 3 2 33 33 H 1.08004 * 123.35653 * 180.27005 * 5 4 3 34 34 H 0.96998 * 119.99535 * 0.02562 * 9 7 6 35 35 H 1.08999 * 110.37121 * 322.26360 * 12 10 9 36 36 H 1.09003 * 110.36718 * 199.94264 * 12 10 9 37 37 H 0.96996 * 119.99954 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.88241 * 118.36067 * 22 13 12 39 39 H 1.09000 * 109.88049 * 239.37196 * 22 13 12 40 40 H 1.08999 * 109.47052 * 61.45720 * 24 23 22 41 41 H 1.08993 * 109.46847 * 181.45696 * 24 23 22 42 42 H 1.09005 * 109.46970 * 301.45810 * 24 23 22 43 43 H 1.08999 * 109.47083 * 58.54334 * 25 23 22 44 44 H 1.09002 * 109.47293 * 178.54343 * 25 23 22 45 45 H 1.09000 * 109.47062 * 298.54438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2852 2.1358 1.1026 5 6 2.7419 3.4128 0.8775 6 6 2.8457 3.7237 -0.4491 7 6 3.2999 5.0088 -0.9883 8 8 3.6181 5.9078 -0.2320 9 7 3.3654 5.1950 -2.3216 10 6 3.8188 6.4795 -2.8605 11 1 3.4548 7.3068 -2.2512 12 6 5.3627 6.5168 -2.9818 13 7 5.6598 5.8046 -4.2380 14 6 6.8406 5.1815 -4.5421 15 1 6.9596 4.6846 -5.4936 16 6 7.8849 5.1887 -3.6275 17 7 7.7398 5.7941 -2.4678 18 14 9.4955 4.3380 -4.0420 19 1 10.0811 4.9535 -5.2600 20 1 10.4416 4.4897 -2.9076 21 1 9.2442 2.8954 -4.2882 22 6 4.4779 5.8734 -5.1098 23 6 3.3829 6.6445 -4.3430 24 6 3.3787 8.1210 -4.7442 25 6 2.0095 6.0135 -4.5802 26 16 2.3541 2.3326 -1.4057 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1449 1.7373 2.0965 33 1 2.9910 4.1027 1.6702 34 1 3.1115 4.4786 -2.9243 35 1 5.8222 6.0037 -2.1370 36 1 5.7141 7.5471 -3.0377 37 1 8.4695 5.7994 -1.8289 38 1 4.7268 6.4008 -6.0307 39 1 4.1293 4.8670 -5.3417 40 1 3.1604 8.2076 -5.8086 41 1 2.6165 8.6505 -4.1727 42 1 4.3562 8.5565 -4.5372 43 1 2.0275 4.9723 -4.2583 44 1 1.2564 6.5572 -4.0098 45 1 1.7661 6.0614 -5.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974783246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:31 Heat of formation + Delta-G solvation = -6.977600 kcal Electronic energy + Delta-G solvation = -25643.361867 eV Core-core repulsion = 22173.010484 eV Total energy + Delta-G solvation = -3470.351383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26843 -39.70438 -38.65680 -35.70369 -34.72195 -34.48334 -32.62265 -30.50529 -29.30191 -28.03487 -27.42838 -26.26514 -24.98036 -23.27610 -22.85066 -21.72370 -20.76235 -19.69908 -18.90000 -18.67477 -17.56570 -16.92475 -16.71334 -16.20953 -15.93932 -15.60962 -15.32467 -15.17872 -14.88888 -14.69601 -14.48819 -14.08057 -13.85501 -13.72333 -13.67081 -13.30838 -13.06692 -13.02075 -12.92016 -12.77105 -12.62147 -12.58230 -12.40674 -12.17738 -12.06796 -11.80081 -11.77918 -11.68190 -11.47227 -11.38301 -11.12817 -10.75881 -10.10984 -9.63091 -9.53780 -8.85795 -7.75506 -5.21189 -0.49966 0.45224 0.90394 1.40544 1.43290 1.46849 1.53494 2.08776 2.27773 2.48530 3.33707 3.52128 3.66596 3.71076 3.85623 3.94979 4.04575 4.15573 4.34529 4.37857 4.42529 4.48998 4.49641 4.69521 4.81133 4.81649 4.85915 4.90453 4.92922 5.00831 5.05365 5.07813 5.15900 5.18156 5.21602 5.26023 5.31225 5.36762 5.44031 5.46835 5.51065 5.64305 5.81964 6.30504 6.48527 7.08315 7.16175 7.78612 8.42573 9.24807 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.004408 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.251029 B = 6350.142983 C = 7497.506542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.160 4.160 5 C -0.057 4.057 6 C -0.300 4.300 7 C 0.582 3.418 8 O -0.579 6.579 9 N -0.691 5.691 10 C 0.135 3.865 11 H 0.082 0.918 12 C 0.155 3.845 13 N -0.618 5.618 14 C -0.236 4.236 15 H 0.085 0.915 16 C -0.068 4.068 17 N -0.949 5.949 18 Si 0.978 3.022 19 H -0.276 1.276 20 H -0.299 1.299 21 H -0.274 1.274 22 C 0.137 3.863 23 C -0.074 4.074 24 C -0.126 4.126 25 C -0.126 4.126 26 S 0.222 5.778 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.170 0.830 33 H 0.144 0.856 34 H 0.402 0.598 35 H 0.068 0.932 36 H -0.012 1.012 37 H 0.242 0.758 38 H 0.029 0.971 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.951 -10.367 1.092 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.301 4.301 4 C -0.190 4.190 5 C -0.091 4.091 6 C -0.420 4.420 7 C 0.370 3.630 8 O -0.461 6.461 9 N -0.341 5.341 10 C 0.029 3.971 11 H 0.100 0.900 12 C 0.028 3.972 13 N -0.344 5.344 14 C -0.365 4.365 15 H 0.103 0.897 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.202 1.202 20 H -0.226 1.226 21 H -0.200 1.200 22 C 0.013 3.987 23 C -0.075 4.075 24 C -0.183 4.183 25 C -0.184 4.184 26 S 0.490 5.510 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.239 0.761 35 H 0.086 0.914 36 H 0.006 0.994 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.631 -10.057 0.078 21.172 hybrid contribution 1.703 0.186 1.459 2.250 sum -16.928 -9.872 1.536 19.656 Atomic orbital electron populations 1.21798 0.93017 1.03194 1.02367 1.20326 0.97100 0.87359 1.04796 1.24727 1.05360 1.03106 0.96934 1.20091 1.04858 0.93001 1.01021 1.20937 0.96152 0.97386 0.94624 1.24517 1.18608 0.99553 0.99333 1.17389 0.76848 0.86308 0.82457 1.90765 1.51652 1.44692 1.59014 1.45603 1.66241 1.16556 1.05653 1.22304 0.95287 0.84877 0.94654 0.90038 1.21936 0.90813 0.93440 0.90984 1.44669 1.11505 1.62816 1.15368 1.19421 0.89863 1.26449 1.00720 0.89676 1.25646 1.01823 1.02035 0.96538 1.70121 1.31792 1.49289 1.08658 0.85162 0.79124 0.78563 0.76563 1.20208 1.22576 1.20032 1.21648 0.86630 0.97268 0.93185 1.21894 0.96137 0.97650 0.91816 1.21688 1.01352 0.92739 1.02525 1.21712 0.93424 0.99917 1.03310 1.82805 1.59064 1.01238 1.07867 0.92249 0.92836 0.90137 0.89781 0.88141 0.81287 0.83807 0.76098 0.91408 0.99408 0.94809 0.95283 0.94916 0.90073 0.90932 0.94693 0.92891 0.91188 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 71.98 0.71 -0.86 16 2 C -0.06 -0.74 6.36 29.85 0.19 -0.55 16 3 C -0.18 -3.67 5.53 24.68 0.14 -3.53 16 4 C -0.16 -3.52 10.00 21.08 0.21 -3.31 16 5 C -0.06 -1.67 10.01 21.72 0.22 -1.46 16 6 C -0.30 -9.99 6.45 24.08 0.16 -9.83 16 7 C 0.58 24.00 7.78 86.42 0.67 24.67 16 8 O -0.58 -28.43 16.59 -4.36 -0.07 -28.50 16 9 N -0.69 -26.41 4.68 -439.58 -2.06 -28.46 16 10 C 0.13 5.51 2.57 46.47 0.12 5.63 16 11 H 0.08 3.42 7.63 -2.39 -0.02 3.40 16 12 C 0.15 8.20 5.27 86.86 0.46 8.66 16 13 N -0.62 -32.03 3.39 -691.97 -2.35 -34.38 16 14 C -0.24 -13.35 10.27 84.03 0.86 -12.49 16 15 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 16 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 17 N -0.95 -60.05 10.09 21.65 0.22 -59.83 16 18 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 C 0.14 5.45 6.40 86.73 0.56 6.00 16 23 C -0.07 -2.40 0.81 -50.91 -0.04 -2.44 16 24 C -0.13 -3.64 8.44 71.98 0.61 -3.03 16 25 C -0.13 -2.98 8.17 71.98 0.59 -2.39 16 26 S 0.22 5.44 22.10 -56.49 -1.25 4.19 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 33 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.40 13.55 5.93 -92.71 -0.55 13.00 16 35 H 0.07 4.27 5.87 -2.39 -0.01 4.25 16 36 H -0.01 -0.69 7.73 -2.39 -0.02 -0.71 16 37 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.03 1.14 7.84 -2.39 -0.02 1.12 16 39 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.03 1.21 7.46 -2.38 -0.02 1.19 16 43 H 0.05 1.23 6.21 -2.39 -0.01 1.22 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.99 373.20 2.87 -73.12 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.44 Total: 23.21 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.91 Total: 1.54 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -4.19 Total: -122.67 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.07 Total: -28.50 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.25 Total: 4.19 kcal Total: -75.99 2.87 -73.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974783246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.146 kcal (2) G-P(sol) polarization free energy of solvation -75.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds