Wall clock time and date at job start Tue Mar 31 2020 13:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47028 * 2 1 4 4 C 1.37477 * 123.34589 * 265.02258 * 3 2 1 5 5 C 1.33821 * 115.09670 * 179.97438 * 4 3 2 6 6 S 1.70620 * 110.95477 * 0.02562 * 5 4 3 7 7 C 1.36643 * 123.35173 * 84.72978 * 3 2 1 8 8 C 1.46581 * 125.46263 * 0.02562 * 7 3 2 9 9 O 1.21704 * 119.99468 * 0.02562 * 8 7 3 10 10 N 1.34769 * 120.00162 * 179.97438 * 8 7 3 11 11 C 1.46509 * 119.99866 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.63898 * 325.69751 * 11 10 8 13 13 C 1.54320 * 110.71999 * 88.84636 * 11 10 8 14 14 N 1.47017 * 107.27144 * 96.16987 * 13 11 10 15 15 C 1.36941 * 125.64715 * 178.90447 * 14 13 11 16 16 H 1.07998 * 119.99901 * 180.02562 * 15 14 13 17 17 C 1.38818 * 119.99701 * 0.02562 * 15 14 13 18 18 N 1.31611 * 120.00251 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99672 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47007 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47072 * 119.99857 * 19 17 15 22 22 H 1.48502 * 109.47043 * 240.00328 * 19 17 15 23 23 C 1.47420 * 108.70486 * 358.93938 * 14 13 11 24 24 C 1.55158 * 110.71780 * 202.56430 * 11 10 8 25 25 C 1.53001 * 111.00853 * 35.20911 * 24 11 10 26 26 C 1.52998 * 111.00451 * 159.06500 * 24 11 10 27 27 H 1.08998 * 109.47097 * 60.00441 * 1 2 3 28 28 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46739 * 300.00185 * 1 2 3 30 30 H 1.08996 * 109.47547 * 239.99834 * 2 1 3 31 31 H 1.08998 * 109.47097 * 119.99559 * 2 1 3 32 32 H 1.07992 * 122.45342 * 359.97438 * 4 3 2 33 33 H 1.07996 * 124.52080 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00342 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.87725 * 215.58697 * 13 11 10 36 36 H 1.09002 * 109.88248 * 336.75091 * 13 11 10 37 37 H 0.96998 * 120.00424 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.36874 * 142.96698 * 23 14 13 39 39 H 1.09003 * 110.36764 * 265.18221 * 23 14 13 40 40 H 1.08998 * 109.47165 * 60.00138 * 25 24 11 41 41 H 1.08999 * 109.47308 * 180.02562 * 25 24 11 42 42 H 1.09004 * 109.46871 * 300.00592 * 25 24 11 43 43 H 1.08995 * 109.47106 * 59.99364 * 26 24 11 44 44 H 1.09000 * 109.47090 * 179.97438 * 26 24 11 45 45 H 1.09005 * 109.46680 * 299.99436 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3782 2.1002 -1.1441 5 6 2.8034 3.3545 -0.9529 6 16 2.7925 3.7564 0.7053 7 6 2.1839 2.1641 1.1366 8 6 1.8895 1.7063 2.4976 9 8 1.4733 0.5778 2.6833 10 7 2.0805 2.5347 3.5433 11 6 1.7867 2.0769 4.9037 12 1 0.9345 1.3975 4.9047 13 6 3.0242 1.4019 5.5317 14 7 3.7124 2.4183 6.3408 15 6 4.8468 2.2157 7.0807 16 1 5.2770 3.0307 7.6437 17 6 5.4436 0.9626 7.1070 18 7 4.9195 -0.0305 6.4205 19 14 6.9905 0.6860 8.1169 20 1 7.3744 1.9521 8.7913 21 1 6.7340 -0.3605 9.1388 22 1 8.0926 0.2464 7.2239 23 6 2.9787 3.6917 6.2242 24 6 1.5283 3.2830 5.8449 25 6 0.8112 4.4133 5.1038 26 6 0.7377 2.8534 7.0824 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3116 1.6542 -2.1254 33 1 3.1130 4.0229 -1.7426 34 1 2.4125 3.4341 3.3953 35 1 2.7119 0.5723 6.1661 36 1 3.6883 1.0411 4.7463 37 1 5.3363 -0.9062 6.4392 38 1 2.9862 4.2223 7.1763 39 1 3.4165 4.3115 5.4417 40 1 -0.1461 4.0517 4.7284 41 1 0.6429 5.2461 5.7867 42 1 1.4263 4.7475 4.2683 43 1 1.3014 2.0977 7.6293 44 1 0.5709 3.7178 7.7251 45 1 -0.2221 2.4386 6.7743 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977638453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:20 Heat of formation + Delta-G solvation = 13.887109 kcal Electronic energy + Delta-G solvation = -26009.507563 eV Core-core repulsion = 22540.060942 eV Total energy + Delta-G solvation = -3469.446621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.91254 -38.62535 -37.27317 -33.88147 -33.06787 -32.60312 -30.69559 -29.62267 -27.87916 -26.78911 -25.62384 -25.21344 -23.40825 -22.33864 -21.32018 -20.01907 -19.25751 -18.11500 -18.04021 -16.67525 -15.92294 -15.66373 -15.07106 -14.82872 -14.39143 -14.05620 -13.89560 -13.81475 -13.62127 -13.44414 -13.24893 -12.88858 -12.54027 -12.34684 -12.03724 -11.96381 -11.85969 -11.67106 -11.44106 -11.36891 -11.07399 -10.99680 -10.93030 -10.78118 -10.66328 -10.35717 -10.22277 -9.98699 -9.84954 -9.62875 -9.48312 -8.84560 -8.61555 -8.47535 -8.38911 -6.80531 -5.66994 -3.01806 0.56723 1.49419 1.88253 2.41972 3.41539 3.45911 3.47125 3.49684 3.58622 4.51851 4.78105 4.91989 5.02317 5.16289 5.23416 5.28614 5.31658 5.41714 5.54899 5.55594 5.64511 5.71325 5.80869 5.81065 5.93114 6.00224 6.03404 6.11937 6.17249 6.20494 6.24981 6.29082 6.39356 6.42719 6.57982 6.58900 6.62954 6.68566 6.75281 6.96359 7.57654 7.66670 7.83481 7.93103 8.27922 8.57959 9.24272 9.85015 10.50426 11.43741 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.004168 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.891215 B = 6715.728723 C = 7284.901596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 C -0.026 4.026 4 C -0.144 4.144 5 C -0.236 4.236 6 S 0.190 5.810 7 C -0.256 4.256 8 C 0.587 3.413 9 O -0.523 6.523 10 N -0.706 5.706 11 C 0.125 3.875 12 H 0.090 0.910 13 C 0.176 3.824 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.144 3.856 24 C -0.090 4.090 25 C -0.131 4.131 26 C -0.125 4.125 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.166 0.834 34 H 0.392 0.608 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.252 0.748 38 H 0.041 0.959 39 H 0.015 0.985 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 8.244 -13.397 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 C -0.041 4.041 4 C -0.176 4.176 5 C -0.373 4.373 6 S 0.458 5.542 7 C -0.376 4.376 8 C 0.372 3.628 9 O -0.401 6.401 10 N -0.356 5.356 11 C 0.021 3.979 12 H 0.108 0.892 13 C 0.050 3.950 14 N -0.329 5.329 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.017 3.983 24 C -0.092 4.092 25 C -0.189 4.189 26 C -0.183 4.183 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.032 8.602 -12.359 17.559 hybrid contribution 0.891 -0.898 -0.646 1.420 sum -8.141 7.704 -13.004 17.168 Atomic orbital electron populations 1.21588 0.94462 1.01632 1.01546 1.20409 0.96375 0.90632 1.03709 1.19506 0.96695 0.97456 0.90411 1.19898 1.03950 0.94178 0.99586 1.25187 1.08838 1.01513 1.01794 1.83039 1.60226 1.12207 0.98689 1.24597 1.15683 0.99313 0.98002 1.16833 0.78204 0.85182 0.82535 1.90788 1.46048 1.18373 1.84892 1.45907 1.66697 1.16271 1.06718 1.22517 1.00474 0.95693 0.79238 0.89198 1.21526 0.88970 0.90487 0.93997 1.44437 1.28404 1.04846 1.55200 1.19067 1.00019 0.95420 1.21253 0.90425 1.24804 0.99290 0.95963 1.00260 1.69967 1.40696 1.01377 1.44471 0.86081 0.82850 0.77651 0.79384 1.20558 1.21779 1.21843 1.21710 0.88674 0.90003 0.97886 1.22105 0.96830 0.94740 0.95525 1.21674 0.99791 0.97806 0.99613 1.21588 0.98787 1.01561 0.96334 0.93537 0.92453 0.92137 0.91569 0.88381 0.84065 0.81654 0.77336 0.92744 0.93337 0.93741 0.94056 0.96794 0.92771 0.92528 0.93233 0.91158 0.92859 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.77 37.16 0.36 -1.29 16 2 C -0.07 -0.96 5.50 -27.88 -0.15 -1.12 16 3 C -0.03 -0.36 5.16 -105.47 -0.54 -0.90 16 4 C -0.14 -1.61 9.96 -41.41 -0.41 -2.03 16 5 C -0.24 -2.41 10.92 29.18 0.32 -2.10 16 6 S 0.19 2.23 22.16 -107.50 -2.38 -0.15 16 7 C -0.26 -3.87 6.45 -36.80 -0.24 -4.11 16 8 C 0.59 10.61 7.78 -12.90 -0.10 10.51 16 9 O -0.52 -10.82 13.38 5.18 0.07 -10.75 16 10 N -0.71 -12.29 4.50 -53.36 -0.24 -12.53 16 11 C 0.13 2.41 2.54 -66.09 -0.17 2.25 16 12 H 0.09 1.78 7.53 -51.93 -0.39 1.39 16 13 C 0.18 4.34 4.80 -3.07 -0.01 4.32 16 14 N -0.60 -15.07 3.38 -169.77 -0.57 -15.64 16 15 C -0.23 -6.35 10.28 -15.05 -0.15 -6.50 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -27.50 10.31 55.49 0.57 -26.93 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.14 2.85 6.16 -2.27 -0.01 2.84 16 24 C -0.09 -1.51 0.84 -152.10 -0.13 -1.64 16 25 C -0.13 -1.72 8.23 37.16 0.31 -1.41 16 26 C -0.13 -1.99 8.58 37.16 0.32 -1.67 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.86 7.57 -51.93 -0.39 0.46 16 30 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.10 1.60 6.34 -51.93 -0.33 1.27 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.39 6.12 6.13 -40.82 -0.25 5.87 16 35 H 0.05 1.51 7.38 -51.93 -0.38 1.13 16 36 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 39 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 43 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -31.76 369.06 -9.79 -41.56 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.06 Total: 4.71 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.72 Total: -3.12 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.24 Total: -55.11 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.38 Total: -0.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.76 -9.79 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977638453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.445 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds