Wall clock time and date at job start Tue Mar 31 2020 13:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47028 * 2 1 4 4 C 1.37477 * 123.34589 * 265.02258 * 3 2 1 5 5 C 1.33821 * 115.09670 * 179.97438 * 4 3 2 6 6 S 1.70620 * 110.95477 * 0.02562 * 5 4 3 7 7 C 1.36643 * 123.35173 * 84.72978 * 3 2 1 8 8 C 1.46581 * 125.46263 * 0.02562 * 7 3 2 9 9 O 1.21704 * 119.99468 * 0.02562 * 8 7 3 10 10 N 1.34769 * 120.00162 * 179.97438 * 8 7 3 11 11 C 1.46509 * 119.99866 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.63898 * 325.69751 * 11 10 8 13 13 C 1.54320 * 110.71999 * 88.84636 * 11 10 8 14 14 N 1.47017 * 107.27144 * 96.16987 * 13 11 10 15 15 C 1.36941 * 125.64715 * 178.90447 * 14 13 11 16 16 H 1.07998 * 119.99901 * 180.02562 * 15 14 13 17 17 C 1.38818 * 119.99701 * 0.02562 * 15 14 13 18 18 N 1.31611 * 120.00251 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99672 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47007 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47072 * 119.99857 * 19 17 15 22 22 H 1.48502 * 109.47043 * 240.00328 * 19 17 15 23 23 C 1.47420 * 108.70486 * 358.93938 * 14 13 11 24 24 C 1.55158 * 110.71780 * 202.56430 * 11 10 8 25 25 C 1.53001 * 111.00853 * 35.20911 * 24 11 10 26 26 C 1.52998 * 111.00451 * 159.06500 * 24 11 10 27 27 H 1.08998 * 109.47097 * 60.00441 * 1 2 3 28 28 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46739 * 300.00185 * 1 2 3 30 30 H 1.08996 * 109.47547 * 239.99834 * 2 1 3 31 31 H 1.08998 * 109.47097 * 119.99559 * 2 1 3 32 32 H 1.07992 * 122.45342 * 359.97438 * 4 3 2 33 33 H 1.07996 * 124.52080 * 179.97438 * 5 4 3 34 34 H 0.97002 * 120.00342 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.87725 * 215.58697 * 13 11 10 36 36 H 1.09002 * 109.88248 * 336.75091 * 13 11 10 37 37 H 0.96998 * 120.00424 * 180.02562 * 18 17 15 38 38 H 1.09000 * 110.36874 * 142.96698 * 23 14 13 39 39 H 1.09003 * 110.36764 * 265.18221 * 23 14 13 40 40 H 1.08998 * 109.47165 * 60.00138 * 25 24 11 41 41 H 1.08999 * 109.47308 * 180.02562 * 25 24 11 42 42 H 1.09004 * 109.46871 * 300.00592 * 25 24 11 43 43 H 1.08995 * 109.47106 * 59.99364 * 26 24 11 44 44 H 1.09000 * 109.47090 * 179.97438 * 26 24 11 45 45 H 1.09005 * 109.46680 * 299.99436 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3782 2.1002 -1.1441 5 6 2.8034 3.3545 -0.9529 6 16 2.7925 3.7564 0.7053 7 6 2.1839 2.1641 1.1366 8 6 1.8895 1.7063 2.4976 9 8 1.4733 0.5778 2.6833 10 7 2.0805 2.5347 3.5433 11 6 1.7867 2.0769 4.9037 12 1 0.9345 1.3975 4.9047 13 6 3.0242 1.4019 5.5317 14 7 3.7124 2.4183 6.3408 15 6 4.8468 2.2157 7.0807 16 1 5.2770 3.0307 7.6437 17 6 5.4436 0.9626 7.1070 18 7 4.9195 -0.0305 6.4205 19 14 6.9905 0.6860 8.1169 20 1 7.3744 1.9521 8.7913 21 1 6.7340 -0.3605 9.1388 22 1 8.0926 0.2464 7.2239 23 6 2.9787 3.6917 6.2242 24 6 1.5283 3.2830 5.8449 25 6 0.8112 4.4133 5.1038 26 6 0.7377 2.8534 7.0824 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3116 1.6542 -2.1254 33 1 3.1130 4.0229 -1.7426 34 1 2.4125 3.4341 3.3953 35 1 2.7119 0.5723 6.1661 36 1 3.6883 1.0411 4.7463 37 1 5.3363 -0.9062 6.4392 38 1 2.9862 4.2223 7.1763 39 1 3.4165 4.3115 5.4417 40 1 -0.1461 4.0517 4.7284 41 1 0.6429 5.2461 5.7867 42 1 1.4263 4.7475 4.2683 43 1 1.3014 2.0977 7.6293 44 1 0.5709 3.7178 7.7251 45 1 -0.2221 2.4386 6.7743 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977638453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:19 Heat of formation + Delta-G solvation = -5.498170 kcal Electronic energy + Delta-G solvation = -26010.348172 eV Core-core repulsion = 22540.060942 eV Total energy + Delta-G solvation = -3470.287230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34021 -39.92747 -38.56360 -35.71588 -34.56098 -33.62840 -32.62689 -30.88589 -29.41049 -28.05376 -27.43251 -26.34742 -25.05671 -23.32658 -22.77955 -21.75837 -20.63350 -19.44531 -19.09794 -18.66835 -17.26685 -16.98519 -16.71936 -16.06631 -15.96456 -15.61984 -15.41356 -15.06990 -14.82362 -14.67207 -14.60971 -14.04792 -13.83897 -13.79851 -13.46480 -13.27633 -13.16483 -12.96648 -12.84610 -12.82322 -12.72439 -12.60504 -12.39139 -12.08377 -11.99273 -11.86768 -11.75145 -11.66957 -11.53143 -11.31893 -10.91968 -10.74199 -10.11849 -9.70385 -9.39266 -8.90289 -7.84123 -5.21090 -0.44694 0.52696 0.96678 1.43271 1.44470 1.44721 1.55080 2.10251 2.25795 2.48461 3.34377 3.46310 3.70174 3.84842 3.90701 3.94621 4.05655 4.17837 4.33139 4.36958 4.48194 4.50632 4.54227 4.67766 4.77469 4.83994 4.86073 4.89802 4.93122 5.02662 5.08430 5.10687 5.12439 5.15297 5.25947 5.33123 5.33801 5.43321 5.45786 5.54570 5.56110 5.70348 5.73786 6.16747 6.50848 7.07259 7.20237 7.76967 8.41530 9.25482 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.004168 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.891215 B = 6715.728723 C = 7284.901596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C -0.024 4.024 4 C -0.156 4.156 5 C -0.211 4.211 6 S 0.215 5.785 7 C -0.305 4.305 8 C 0.581 3.419 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.138 3.862 12 H 0.080 0.920 13 C 0.195 3.805 14 N -0.620 5.620 15 C -0.235 4.235 16 H 0.088 0.912 17 C -0.070 4.070 18 N -0.955 5.955 19 Si 0.977 3.023 20 H -0.260 1.260 21 H -0.294 1.294 22 H -0.296 1.296 23 C 0.138 3.862 24 C -0.075 4.075 25 C -0.124 4.124 26 C -0.122 4.122 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.171 0.829 33 H 0.205 0.795 34 H 0.402 0.598 35 H 0.007 0.993 36 H -0.002 1.002 37 H 0.243 0.757 38 H 0.051 0.949 39 H 0.028 0.972 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.030 0.970 44 H 0.080 0.920 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 11.585 -15.266 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 C -0.040 4.040 4 C -0.186 4.186 5 C -0.349 4.349 6 S 0.484 5.516 7 C -0.425 4.425 8 C 0.369 3.631 9 O -0.444 6.444 10 N -0.351 5.351 11 C 0.033 3.967 12 H 0.098 0.902 13 C 0.069 3.931 14 N -0.346 5.346 15 C -0.364 4.364 16 H 0.106 0.894 17 C -0.262 4.262 18 N -0.604 5.604 19 Si 0.806 3.194 20 H -0.184 1.184 21 H -0.222 1.222 22 H -0.224 1.224 23 C 0.013 3.987 24 C -0.077 4.077 25 C -0.182 4.182 26 C -0.180 4.180 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.189 0.811 33 H 0.222 0.778 34 H 0.239 0.761 35 H 0.025 0.975 36 H 0.016 0.984 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.099 0.901 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.463 12.022 -14.226 20.892 hybrid contribution 1.040 -1.903 -0.136 2.173 sum -8.423 10.119 -14.362 19.484 Atomic orbital electron populations 1.21522 0.93617 1.02083 1.01277 1.20405 0.97164 0.90897 1.02949 1.19807 0.95637 0.97389 0.91152 1.20099 1.04268 0.94497 0.99774 1.25699 1.06022 1.01493 1.01661 1.82879 1.59364 1.09511 0.99875 1.24403 1.19335 1.02218 0.96572 1.17368 0.77223 0.84618 0.83905 1.90760 1.47809 1.20012 1.85813 1.45738 1.66851 1.16685 1.05778 1.22126 0.97137 0.96790 0.80689 0.90196 1.21061 0.90088 0.90100 0.91868 1.44684 1.28308 1.06861 1.54737 1.19530 1.00593 0.95578 1.20740 0.89380 1.25681 1.02677 0.95944 1.01927 1.70244 1.42221 1.01440 1.46505 0.85020 0.78833 0.77976 0.77598 1.18370 1.22165 1.22377 1.21971 0.89977 0.87956 0.98792 1.22091 0.95619 0.94590 0.95385 1.21648 0.99795 0.96743 0.99967 1.21579 0.98778 1.01646 0.95978 0.91184 0.91728 0.94791 0.89001 0.92343 0.81129 0.77827 0.76113 0.97486 0.98404 0.94772 0.93059 0.95438 0.91658 0.89907 0.92361 0.95054 0.90092 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.77 71.98 0.70 -2.41 16 2 C -0.07 -2.03 5.50 29.85 0.16 -1.87 16 3 C -0.02 -0.64 5.16 -20.42 -0.11 -0.74 16 4 C -0.16 -2.99 9.96 21.09 0.21 -2.78 16 5 C -0.21 -3.47 10.92 66.82 0.73 -2.74 16 6 S 0.22 4.57 22.16 -56.49 -1.25 3.32 16 7 C -0.31 -9.27 6.45 24.07 0.16 -9.11 16 8 C 0.58 22.09 7.78 86.42 0.67 22.77 16 9 O -0.56 -25.29 13.38 -4.36 -0.06 -25.35 16 10 N -0.70 -25.07 4.50 -440.96 -1.99 -27.06 16 11 C 0.14 5.56 2.54 46.18 0.12 5.68 16 12 H 0.08 3.38 7.53 -2.39 -0.02 3.36 16 13 C 0.20 10.37 4.80 86.73 0.42 10.78 16 14 N -0.62 -32.06 3.38 -691.03 -2.34 -34.40 16 15 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16 16 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 17 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 18 N -0.95 -60.99 10.31 21.65 0.22 -60.77 16 19 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 22 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 23 C 0.14 5.37 6.16 87.03 0.54 5.90 16 24 C -0.08 -2.44 0.84 -50.62 -0.04 -2.49 16 25 C -0.12 -2.85 8.23 71.98 0.59 -2.26 16 26 C -0.12 -3.78 8.58 71.98 0.62 -3.16 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 0.99 7.57 -2.38 -0.02 0.98 16 30 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 31 H 0.06 2.07 6.34 -2.39 -0.02 2.05 16 32 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.40 12.41 6.13 -92.71 -0.57 11.85 16 35 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 36 H 0.00 -0.14 7.41 -2.39 -0.02 -0.16 16 37 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 39 H 0.03 1.02 8.00 -2.39 -0.02 1.01 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.25 6.44 -2.39 -0.02 1.24 16 43 H 0.03 1.20 7.91 -2.39 -0.02 1.18 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -76.51 369.06 3.13 -73.38 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.42 Total: 20.15 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 6.10 Total: 1.45 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.10 Total: -122.23 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.35 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.25 Total: 3.32 kcal Total: -76.51 3.13 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977638453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.885 kcal (2) G-P(sol) polarization free energy of solvation -76.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds