Wall clock time and date at job start Tue Mar 31 2020 13:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47409 * 2 1 4 4 S 1.70620 * 124.52171 * 269.69869 * 3 2 1 5 5 C 1.75832 * 91.56165 * 179.97438 * 4 3 2 6 6 C 1.46582 * 125.45469 * 180.02562 * 5 4 3 7 7 O 1.21698 * 119.99837 * 174.26569 * 6 5 4 8 8 N 1.34777 * 119.99916 * 354.25587 * 6 5 4 9 9 C 1.47431 * 125.64504 * 185.04523 * 8 6 5 10 10 C 1.54914 * 104.82866 * 204.09449 * 9 8 6 11 11 C 1.55154 * 101.58177 * 322.99305 * 10 9 8 12 12 H 1.08998 * 110.71644 * 276.95871 * 11 10 9 13 13 N 1.46500 * 110.71938 * 153.86852 * 11 10 9 14 14 C 1.46503 * 119.99834 * 299.99819 * 13 11 10 15 15 C 1.36934 * 120.00249 * 119.99705 * 13 11 10 16 16 H 1.08002 * 120.00152 * 24.11156 * 15 13 11 17 17 C 1.38814 * 120.00135 * 204.10890 * 15 13 11 18 18 N 1.31618 * 120.00012 * 9.67488 * 17 15 13 19 19 Si 1.86796 * 120.00099 * 189.66711 * 17 15 13 20 20 H 1.48503 * 109.46938 * 60.00374 * 19 17 15 21 21 H 1.48503 * 109.47139 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47443 * 300.00314 * 19 17 15 23 23 C 1.47021 * 125.65125 * 4.74084 * 8 6 5 24 24 C 1.36642 * 109.08528 * 0.33710 * 5 4 3 25 25 C 1.33819 * 124.52419 * 89.99380 * 3 2 1 26 26 C 1.50703 * 122.44819 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47541 * 300.00256 * 1 2 3 28 28 H 1.08996 * 109.46722 * 60.00301 * 1 2 3 29 29 H 1.09001 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46780 * 119.99958 * 2 1 3 31 31 H 1.09002 * 109.47251 * 239.99035 * 2 1 3 32 32 H 1.08998 * 110.36791 * 322.92848 * 9 8 6 33 33 H 1.08999 * 110.36615 * 85.14582 * 9 8 6 34 34 H 1.09008 * 111.00115 * 81.06714 * 10 9 8 35 35 H 1.09002 * 111.00285 * 204.87654 * 10 9 8 36 36 H 1.08999 * 109.47365 * 95.13350 * 14 13 11 37 37 H 1.09002 * 109.46997 * 215.13385 * 14 13 11 38 38 H 1.09002 * 109.46947 * 335.13282 * 14 13 11 39 39 H 0.96997 * 120.00017 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.88045 * 298.39178 * 23 8 6 41 41 H 1.09004 * 109.87844 * 59.55477 * 23 8 6 42 42 H 1.07996 * 123.35054 * 179.71254 * 24 5 4 43 43 H 1.08998 * 109.47279 * 89.99825 * 26 25 3 44 44 H 1.09003 * 109.46672 * 210.00102 * 26 25 3 45 45 H 1.08999 * 109.47043 * 329.99540 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3617 2.3299 -1.4057 5 6 2.8481 3.7227 -0.4491 6 6 3.3043 5.0071 -0.9884 7 8 3.5181 5.9408 -0.2376 8 7 3.4873 5.1540 -2.3156 9 6 4.0394 6.3488 -2.9798 10 6 3.4856 6.2904 -4.4254 11 6 3.5210 4.7658 -4.7111 12 1 4.5155 4.4568 -5.0328 13 7 2.5176 4.4031 -5.7150 14 6 1.0985 4.6623 -5.4591 15 6 2.9059 3.8219 -6.8924 16 1 3.8397 3.2819 -6.9459 17 6 2.0995 3.9268 -8.0174 18 7 1.0627 4.7375 -8.0106 19 14 2.4858 2.9174 -9.5409 20 1 2.4419 1.4724 -9.2016 21 1 1.4814 3.2084 -10.5953 22 1 3.8408 3.2685 -10.0369 23 6 3.1752 4.1469 -3.3402 24 6 2.7392 3.4137 0.8774 25 6 2.2851 2.1358 1.1025 26 6 2.0879 1.5803 2.4895 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 3.6965 7.2540 -2.4786 33 1 5.1286 6.3095 -2.9871 34 1 2.4656 6.6725 -4.4687 35 1 4.1334 6.8327 -5.1141 36 1 0.8174 5.6168 -5.9043 37 1 0.4986 3.8656 -5.8989 38 1 0.9237 4.6975 -4.3838 39 1 0.4989 4.8105 -8.7966 40 1 3.7737 3.2512 -3.1740 41 1 2.1145 3.8984 -3.3047 42 1 2.9851 4.1047 1.6701 43 1 3.0091 1.1033 2.8242 44 1 1.8292 2.3900 3.1717 45 1 1.2827 0.8457 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980340892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:58 Heat of formation + Delta-G solvation = 15.201223 kcal Electronic energy + Delta-G solvation = -25337.724081 eV Core-core repulsion = 21868.334444 eV Total energy + Delta-G solvation = -3469.389637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86208 -38.69165 -37.30814 -34.76977 -33.87866 -31.71926 -30.73964 -29.78612 -27.99088 -27.38403 -26.11985 -25.04129 -23.38188 -22.56783 -21.79421 -19.75692 -19.55362 -18.11937 -17.85064 -17.09999 -16.08618 -15.95336 -15.60305 -14.87571 -14.49983 -14.33949 -14.26157 -13.81711 -13.44829 -13.43418 -13.24600 -12.81148 -12.73307 -12.60174 -12.47357 -12.30152 -12.16354 -11.83048 -11.68995 -11.47437 -11.33606 -11.24696 -11.04125 -10.86443 -10.78466 -10.51433 -10.38705 -10.29844 -10.02217 -9.93211 -9.76334 -8.74913 -8.63778 -8.38002 -8.24963 -6.87160 -5.81163 -3.30858 0.57020 1.55810 2.00838 2.34407 3.14097 3.33392 3.33980 3.39808 3.39998 4.38854 4.55431 4.65184 4.83762 5.04831 5.09626 5.11110 5.19202 5.25549 5.30083 5.32927 5.46966 5.47630 5.56886 5.58789 5.64358 5.72023 5.73825 5.77544 5.84986 5.89975 5.97486 6.01456 6.12898 6.29106 6.32086 6.44380 6.49800 6.58312 6.71259 6.82923 7.29013 7.64496 7.69836 7.72762 8.26496 8.30284 9.13292 9.74399 10.23529 11.23279 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.003871 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.591446 B = 7231.582597 C = 8754.766643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.220 4.220 4 S 0.240 5.760 5 C -0.264 4.264 6 C 0.602 3.398 7 O -0.544 6.544 8 N -0.608 5.608 9 C 0.109 3.891 10 C -0.151 4.151 11 C 0.179 3.821 12 H 0.082 0.918 13 N -0.585 5.585 14 C 0.159 3.841 15 C -0.263 4.263 16 H 0.070 0.930 17 C 0.008 3.992 18 N -0.905 5.905 19 Si 0.907 3.093 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.063 3.937 24 C -0.055 4.055 25 C -0.126 4.126 26 C -0.092 4.092 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.034 0.966 37 H 0.044 0.956 38 H -0.001 1.001 39 H 0.254 0.746 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -7.110 16.239 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.339 4.339 4 S 0.511 5.489 5 C -0.385 4.385 6 C 0.391 3.609 7 O -0.425 6.425 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.191 4.191 11 C 0.068 3.932 12 H 0.100 0.900 13 N -0.306 5.306 14 C 0.015 3.985 15 C -0.393 4.393 16 H 0.088 0.912 17 C -0.191 4.191 18 N -0.549 5.549 19 Si 0.737 3.263 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.208 1.208 23 C -0.063 4.063 24 C -0.089 4.089 25 C -0.139 4.139 26 C -0.150 4.150 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.166 0.834 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.342 -6.919 14.934 16.513 hybrid contribution 0.182 -0.213 0.654 0.711 sum 1.524 -7.132 15.588 17.209 Atomic orbital electron populations 1.21790 0.94201 1.01983 1.02660 1.20095 0.96288 0.89686 1.03186 1.24519 1.07666 1.02392 0.99331 1.83912 1.58583 1.01316 1.05068 1.24493 1.16438 0.99472 0.98065 1.16575 0.77572 0.86027 0.80758 1.90786 1.53547 1.40584 1.57551 1.48323 1.62547 1.18360 1.04871 1.22279 0.97803 0.87813 0.93465 1.23417 1.02106 1.00360 0.93239 1.21229 0.94262 0.91131 0.86593 0.90011 1.43863 1.00991 1.70234 1.15514 1.20835 0.83837 1.00884 0.92921 1.19169 1.06490 1.26867 0.86751 0.91207 1.25066 0.98326 0.98231 0.97495 1.70044 1.18115 1.37567 1.29179 0.86304 0.77531 0.79926 0.82545 1.20964 1.21603 1.20838 1.23016 1.01695 0.91170 0.90397 1.20497 0.97617 0.95757 0.95025 1.18574 1.04972 0.94019 0.96312 1.20483 1.01816 1.00844 0.91901 0.92339 0.92165 0.92015 0.90181 0.90687 0.90805 0.91565 0.90551 0.90079 0.94756 0.93678 0.98245 0.93541 0.91388 0.90074 0.83444 0.91533 0.91606 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.05 -0.49 5.72 -27.88 -0.16 -0.65 16 3 C -0.22 -2.56 5.53 -35.86 -0.20 -2.76 16 4 S 0.24 3.24 18.41 -107.50 -1.98 1.26 16 5 C -0.26 -4.07 6.38 -36.80 -0.23 -4.30 16 6 C 0.60 10.65 7.80 -12.90 -0.10 10.55 16 7 O -0.54 -10.92 17.08 5.19 0.09 -10.83 16 8 N -0.61 -10.30 3.33 -172.08 -0.57 -10.87 16 9 C 0.11 1.72 6.93 -2.52 -0.02 1.70 16 10 C -0.15 -2.60 6.66 -24.58 -0.16 -2.76 16 11 C 0.18 3.39 3.43 -66.09 -0.23 3.16 16 12 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 13 N -0.59 -13.60 2.94 -171.38 -0.50 -14.10 16 14 C 0.16 3.71 7.74 59.85 0.46 4.18 16 15 C -0.26 -6.77 9.61 -15.06 -0.14 -6.91 16 16 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 17 C 0.01 0.21 5.17 -17.43 -0.09 0.12 16 18 N -0.91 -25.18 10.60 55.49 0.59 -24.59 16 19 Si 0.91 20.87 29.56 -169.99 -5.03 15.84 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.06 1.07 4.71 -3.06 -0.01 1.06 16 24 C -0.06 -0.75 9.80 -40.44 -0.40 -1.15 16 25 C -0.13 -1.48 5.78 -106.45 -0.62 -2.09 16 26 C -0.09 -0.79 9.55 36.01 0.34 -0.44 16 27 H 0.06 0.49 7.80 -51.93 -0.41 0.08 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.62 7.25 -51.93 -0.38 0.24 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.17 7.99 -51.93 -0.41 0.75 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.44 7.34 -51.92 -0.38 1.06 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 37 H 0.04 1.13 7.33 -51.93 -0.38 0.75 16 38 H 0.00 -0.02 6.18 -51.93 -0.32 -0.34 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.07 1.08 6.85 -51.93 -0.36 0.73 16 41 H 0.08 1.45 4.87 -51.93 -0.25 1.20 16 42 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 45 H 0.07 0.49 6.86 -51.93 -0.36 0.14 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -29.76 366.86 -10.03 -39.78 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.96 Total: -0.82 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.19 Total: -1.20 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.49 Total: -49.56 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.98 Total: 1.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.76 -10.03 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980340892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.984 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds