Wall clock time and date at job start Tue Mar 31 2020 13:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47409 * 2 1 4 4 S 1.70620 * 124.52171 * 269.69869 * 3 2 1 5 5 C 1.75832 * 91.56165 * 179.97438 * 4 3 2 6 6 C 1.46582 * 125.45469 * 180.02562 * 5 4 3 7 7 O 1.21698 * 119.99837 * 174.26569 * 6 5 4 8 8 N 1.34777 * 119.99916 * 354.25587 * 6 5 4 9 9 C 1.47431 * 125.64504 * 185.04523 * 8 6 5 10 10 C 1.54914 * 104.82866 * 204.09449 * 9 8 6 11 11 C 1.55154 * 101.58177 * 322.99305 * 10 9 8 12 12 H 1.08998 * 110.71644 * 276.95871 * 11 10 9 13 13 N 1.46500 * 110.71938 * 153.86852 * 11 10 9 14 14 C 1.46503 * 119.99834 * 299.99819 * 13 11 10 15 15 C 1.36934 * 120.00249 * 119.99705 * 13 11 10 16 16 H 1.08002 * 120.00152 * 24.11156 * 15 13 11 17 17 C 1.38814 * 120.00135 * 204.10890 * 15 13 11 18 18 N 1.31618 * 120.00012 * 9.67488 * 17 15 13 19 19 Si 1.86796 * 120.00099 * 189.66711 * 17 15 13 20 20 H 1.48503 * 109.46938 * 60.00374 * 19 17 15 21 21 H 1.48503 * 109.47139 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47443 * 300.00314 * 19 17 15 23 23 C 1.47021 * 125.65125 * 4.74084 * 8 6 5 24 24 C 1.36642 * 109.08528 * 0.33710 * 5 4 3 25 25 C 1.33819 * 124.52419 * 89.99380 * 3 2 1 26 26 C 1.50703 * 122.44819 * 359.97438 * 25 3 2 27 27 H 1.09000 * 109.47541 * 300.00256 * 1 2 3 28 28 H 1.08996 * 109.46722 * 60.00301 * 1 2 3 29 29 H 1.09001 * 109.47032 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46780 * 119.99958 * 2 1 3 31 31 H 1.09002 * 109.47251 * 239.99035 * 2 1 3 32 32 H 1.08998 * 110.36791 * 322.92848 * 9 8 6 33 33 H 1.08999 * 110.36615 * 85.14582 * 9 8 6 34 34 H 1.09008 * 111.00115 * 81.06714 * 10 9 8 35 35 H 1.09002 * 111.00285 * 204.87654 * 10 9 8 36 36 H 1.08999 * 109.47365 * 95.13350 * 14 13 11 37 37 H 1.09002 * 109.46997 * 215.13385 * 14 13 11 38 38 H 1.09002 * 109.46947 * 335.13282 * 14 13 11 39 39 H 0.96997 * 120.00017 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.88045 * 298.39178 * 23 8 6 41 41 H 1.09004 * 109.87844 * 59.55477 * 23 8 6 42 42 H 1.07996 * 123.35054 * 179.71254 * 24 5 4 43 43 H 1.08998 * 109.47279 * 89.99825 * 26 25 3 44 44 H 1.09003 * 109.46672 * 210.00102 * 26 25 3 45 45 H 1.08999 * 109.47043 * 329.99540 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3617 2.3299 -1.4057 5 6 2.8481 3.7227 -0.4491 6 6 3.3043 5.0071 -0.9884 7 8 3.5181 5.9408 -0.2376 8 7 3.4873 5.1540 -2.3156 9 6 4.0394 6.3488 -2.9798 10 6 3.4856 6.2904 -4.4254 11 6 3.5210 4.7658 -4.7111 12 1 4.5155 4.4568 -5.0328 13 7 2.5176 4.4031 -5.7150 14 6 1.0985 4.6623 -5.4591 15 6 2.9059 3.8219 -6.8924 16 1 3.8397 3.2819 -6.9459 17 6 2.0995 3.9268 -8.0174 18 7 1.0627 4.7375 -8.0106 19 14 2.4858 2.9174 -9.5409 20 1 2.4419 1.4724 -9.2016 21 1 1.4814 3.2084 -10.5953 22 1 3.8408 3.2685 -10.0369 23 6 3.1752 4.1469 -3.3402 24 6 2.7392 3.4137 0.8774 25 6 2.2851 2.1358 1.1025 26 6 2.0879 1.5803 2.4895 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 3.6965 7.2540 -2.4786 33 1 5.1286 6.3095 -2.9871 34 1 2.4656 6.6725 -4.4687 35 1 4.1334 6.8327 -5.1141 36 1 0.8174 5.6168 -5.9043 37 1 0.4986 3.8656 -5.8989 38 1 0.9237 4.6975 -4.3838 39 1 0.4989 4.8105 -8.7966 40 1 3.7737 3.2512 -3.1740 41 1 2.1145 3.8984 -3.3047 42 1 2.9851 4.1047 1.6701 43 1 3.0091 1.1033 2.8242 44 1 1.8292 2.3900 3.1717 45 1 1.2827 0.8457 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980340892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:57 Heat of formation + Delta-G solvation = -0.059863 kcal Electronic energy + Delta-G solvation = -25338.385851 eV Core-core repulsion = 21868.334444 eV Total energy + Delta-G solvation = -3470.051407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22108 -39.75014 -38.73786 -36.50794 -34.73641 -33.44014 -32.05765 -30.89409 -29.48256 -28.27242 -28.06156 -26.22425 -24.96188 -23.62347 -22.98461 -21.15168 -20.92542 -19.16869 -19.09965 -18.89692 -17.56128 -17.15371 -16.93231 -16.46537 -15.78508 -15.45189 -15.18882 -15.12279 -15.04971 -14.61844 -14.46830 -14.32398 -14.13896 -13.73116 -13.44167 -13.31062 -13.18900 -13.01931 -12.92136 -12.79961 -12.64258 -12.53937 -12.41465 -12.33925 -12.19864 -12.09417 -11.99930 -11.82796 -11.66247 -11.33192 -11.21817 -10.61199 -9.97168 -9.48977 -9.33708 -8.79425 -7.80902 -5.32091 -0.50438 0.49865 0.99679 1.30646 1.51759 1.53062 1.59315 1.82825 2.07824 2.52774 3.30145 3.33277 3.67420 3.72215 3.78055 3.92252 4.10362 4.21365 4.22768 4.24748 4.37923 4.40078 4.45162 4.51204 4.55656 4.73535 4.80618 4.86259 4.86991 4.88056 4.90543 5.00450 5.05828 5.07517 5.12396 5.21621 5.30457 5.32025 5.35972 5.43027 5.57304 5.67484 5.73116 6.29102 6.36119 6.91677 7.15444 7.83956 8.29564 9.22265 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.003871 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.591446 B = 7231.582597 C = 8754.766643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.204 4.204 4 S 0.222 5.778 5 C -0.298 4.298 6 C 0.599 3.401 7 O -0.576 6.576 8 N -0.611 5.611 9 C 0.114 3.886 10 C -0.141 4.141 11 C 0.172 3.828 12 H 0.090 0.910 13 N -0.598 5.598 14 C 0.180 3.820 15 C -0.266 4.266 16 H 0.079 0.921 17 C -0.046 4.046 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.277 1.277 21 H -0.299 1.299 22 H -0.275 1.275 23 C 0.079 3.921 24 C -0.048 4.048 25 C -0.133 4.133 26 C -0.090 4.090 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.006 0.994 37 H 0.019 0.981 38 H 0.021 0.979 39 H 0.248 0.752 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -9.112 17.729 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.324 4.324 4 S 0.494 5.506 5 C -0.418 4.418 6 C 0.390 3.610 7 O -0.459 6.459 8 N -0.343 5.343 9 C -0.008 4.008 10 C -0.181 4.181 11 C 0.062 3.938 12 H 0.108 0.892 13 N -0.320 5.320 14 C 0.035 3.965 15 C -0.396 4.396 16 H 0.096 0.904 17 C -0.242 4.242 18 N -0.583 5.583 19 Si 0.797 3.203 20 H -0.203 1.203 21 H -0.225 1.225 22 H -0.201 1.201 23 C -0.047 4.047 24 C -0.083 4.083 25 C -0.144 4.144 26 C -0.149 4.149 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.024 0.976 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.168 0.832 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.187 -8.927 16.437 18.832 hybrid contribution -0.064 0.359 0.312 0.480 sum 2.123 -8.568 16.750 18.933 Atomic orbital electron populations 1.21790 0.93606 1.03079 1.02049 1.20260 0.96671 0.87974 1.04513 1.24856 1.06145 1.03306 0.98093 1.83862 1.59174 1.01244 1.06366 1.24360 1.19080 0.99348 0.99018 1.16891 0.76973 0.86561 0.80564 1.90754 1.55185 1.41872 1.58119 1.48364 1.62512 1.18526 1.04870 1.22294 0.98886 0.87604 0.92048 1.23252 1.01308 0.98969 0.94571 1.21414 0.93547 0.92313 0.86484 0.89188 1.43987 1.01554 1.70554 1.15856 1.20483 0.84032 0.98340 0.93648 1.19549 1.06378 1.26272 0.87408 0.90361 1.25789 0.98562 0.99562 1.00252 1.70218 1.19254 1.39368 1.29491 0.85329 0.77157 0.78721 0.79120 1.20285 1.22540 1.20063 1.22750 1.01377 0.91421 0.89117 1.20755 0.96406 0.96644 0.94484 1.18867 1.04366 0.93180 0.98008 1.20567 1.03052 1.01427 0.89821 0.92064 0.93697 0.90115 0.87924 0.90268 0.90837 0.89464 0.92512 0.89224 0.97556 0.96190 0.96032 0.94312 0.90053 0.91016 0.83224 0.90214 0.90953 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.90 71.98 0.71 -1.39 16 2 C -0.06 -0.84 5.72 29.85 0.17 -0.67 16 3 C -0.20 -4.33 5.53 24.68 0.14 -4.19 16 4 S 0.22 5.79 18.41 -56.49 -1.04 4.75 16 5 C -0.30 -9.01 6.38 24.07 0.15 -8.86 16 6 C 0.60 21.12 7.80 86.42 0.67 21.79 16 7 O -0.58 -23.20 17.08 -4.34 -0.07 -23.28 16 8 N -0.61 -20.34 3.33 -816.56 -2.72 -23.05 16 9 C 0.11 3.49 6.93 86.86 0.60 4.09 16 10 C -0.14 -4.80 6.66 31.99 0.21 -4.59 16 11 C 0.17 6.39 3.43 46.18 0.16 6.54 16 12 H 0.09 3.21 7.93 -2.39 -0.02 3.19 16 13 N -0.60 -27.87 2.94 -696.13 -2.04 -29.91 16 14 C 0.18 8.57 7.74 127.77 0.99 9.56 16 15 C -0.27 -13.61 9.61 84.03 0.81 -12.81 16 16 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 17 C -0.05 -2.46 5.17 84.86 0.44 -2.02 16 18 N -0.94 -53.39 10.60 21.65 0.23 -53.16 16 19 Si 0.97 42.97 29.56 68.60 2.03 45.00 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 C 0.08 2.63 4.71 86.73 0.41 3.04 16 24 C -0.05 -1.26 9.80 21.72 0.21 -1.05 16 25 C -0.13 -2.80 5.78 -21.05 -0.12 -2.93 16 26 C -0.09 -1.25 9.55 71.24 0.68 -0.57 16 27 H 0.06 0.84 7.80 -2.39 -0.02 0.82 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.15 7.25 -2.38 -0.02 1.14 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 2.29 7.99 -2.39 -0.02 2.27 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.17 7.34 -2.38 -0.02 2.15 16 35 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.01 0.33 7.33 -2.39 -0.02 0.31 16 37 H 0.02 1.02 7.33 -2.39 -0.02 1.00 16 38 H 0.02 0.91 6.18 -2.39 -0.01 0.89 16 39 H 0.25 13.87 8.31 -92.71 -0.77 13.09 16 40 H 0.08 2.50 6.85 -2.39 -0.02 2.48 16 41 H 0.07 2.55 4.87 -2.38 -0.01 2.53 16 42 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 45 H 0.08 0.90 6.86 -2.39 -0.02 0.88 16 Total: -1.00 -64.36 366.86 3.60 -60.76 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.98 Total: 12.93 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.24 Total: 5.96 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.53 Total: -106.12 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.07 Total: -23.28 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 5.79 SS G_CDS: -1.04 Total: 4.75 kcal Total: -64.36 3.60 -60.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980340892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.697 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds