Wall clock time and date at job start Tue Mar 31 2020 13:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47078 * 2 1 4 4 C 1.37474 * 122.45097 * 265.02915 * 3 2 1 5 5 C 1.36645 * 113.29691 * 179.97438 * 4 3 2 6 6 C 1.46580 * 125.45809 * 179.97438 * 5 4 3 7 7 O 1.21707 * 119.99964 * 5.20658 * 6 5 4 8 8 N 1.34779 * 119.99972 * 185.20266 * 6 5 4 9 9 C 1.47424 * 125.64687 * 184.63017 * 8 6 5 10 10 C 1.54914 * 104.83177 * 155.82655 * 9 8 6 11 11 C 1.55150 * 101.58100 * 37.00725 * 10 9 8 12 12 H 1.09007 * 110.72286 * 83.03717 * 11 10 9 13 13 N 1.46495 * 110.72227 * 206.13446 * 11 10 9 14 14 C 1.46509 * 120.00031 * 60.00070 * 13 11 10 15 15 C 1.36934 * 120.00427 * 240.00244 * 13 11 10 16 16 H 1.08004 * 120.00023 * 339.32735 * 15 13 11 17 17 C 1.38813 * 120.00190 * 159.05070 * 15 13 11 18 18 N 1.31617 * 120.00017 * 339.67093 * 17 15 13 19 19 Si 1.86800 * 120.00028 * 159.67024 * 17 15 13 20 20 H 1.48503 * 109.47089 * 94.98661 * 19 17 15 21 21 H 1.48498 * 109.46969 * 214.98540 * 19 17 15 22 22 H 1.48503 * 109.47129 * 334.98601 * 19 17 15 23 23 C 1.47018 * 125.64940 * 4.57325 * 8 6 5 24 24 S 1.75828 * 109.08455 * 0.26745 * 5 4 3 25 25 C 1.33815 * 122.44774 * 85.00624 * 3 2 1 26 26 C 1.50703 * 124.52231 * 0.05242 * 25 3 2 27 27 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46979 * 299.99487 * 1 2 3 29 29 H 1.09001 * 109.47593 * 59.99628 * 1 2 3 30 30 H 1.09008 * 109.46859 * 240.00457 * 2 1 3 31 31 H 1.08992 * 109.47541 * 120.00185 * 2 1 3 32 32 H 1.07996 * 123.35023 * 359.97438 * 4 3 2 33 33 H 1.09003 * 110.37046 * 36.98590 * 9 8 6 34 34 H 1.09000 * 110.46124 * 274.70937 * 9 8 6 35 35 H 1.09004 * 111.00247 * 278.93395 * 10 9 8 36 36 H 1.08997 * 111.03644 * 155.09744 * 10 9 8 37 37 H 1.09002 * 109.46757 * 264.63225 * 14 13 11 38 38 H 1.09002 * 109.46628 * 24.62987 * 14 13 11 39 39 H 1.08996 * 109.46979 * 144.62916 * 14 13 11 40 40 H 0.96998 * 120.00538 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.88211 * 61.69058 * 23 8 6 42 42 H 1.08993 * 109.88510 * 300.52466 * 23 8 6 43 43 H 1.09004 * 109.46394 * 90.00700 * 26 25 3 44 44 H 1.08993 * 109.47228 * 210.00184 * 26 25 3 45 45 H 1.09000 * 109.47284 * 330.00776 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3729 2.0828 -1.1557 5 6 2.8043 3.3612 -0.9392 6 6 3.2331 4.3015 -1.9787 7 8 3.1331 3.9975 -3.1530 8 7 3.7380 5.5027 -1.6341 9 6 4.1160 6.5765 -2.5708 10 6 4.0284 7.8791 -1.7370 11 6 4.5474 7.4001 -0.3555 12 1 5.6371 7.4051 -0.3300 13 7 4.0018 8.2318 0.7200 14 6 2.5526 8.3153 0.9181 15 6 4.8463 8.9313 1.5402 16 1 5.8806 8.6338 1.6304 17 6 4.3744 10.0261 2.2512 18 7 3.2761 10.6390 1.8633 19 14 5.2981 10.6296 3.7585 20 1 6.2189 11.7274 3.3682 21 1 4.3285 11.1312 4.7652 22 1 6.0812 9.5099 4.3403 23 6 4.0019 5.9596 -0.2619 24 16 2.7707 3.6947 0.7868 25 6 2.1789 2.1305 1.1250 26 6 1.8697 1.6145 2.5067 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.3062 1.6369 -2.1370 33 1 3.4178 6.6137 -3.4071 34 1 5.1329 6.4257 -2.9331 35 1 2.9987 8.2299 -1.6673 36 1 4.6754 8.6527 -2.1506 37 1 2.1655 9.1944 0.4027 38 1 2.0787 7.4201 0.5154 39 1 2.3354 8.3936 1.9833 40 1 2.9465 11.4043 2.3598 41 1 4.7426 5.3126 0.2082 42 1 3.0779 5.9499 0.3162 43 1 2.7607 1.1497 2.9287 44 1 1.5563 2.4428 3.1421 45 1 1.0684 0.8778 2.4486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980347210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:53 Heat of formation + Delta-G solvation = 15.489687 kcal Electronic energy + Delta-G solvation = -25310.386719 eV Core-core repulsion = 21841.009591 eV Total energy + Delta-G solvation = -3469.377128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.87916 -38.78238 -37.33371 -34.77969 -33.03082 -31.77891 -31.52532 -30.18352 -27.95758 -27.07037 -26.13008 -24.12046 -24.02752 -23.01394 -21.65487 -19.63404 -19.55135 -18.12980 -17.85763 -17.10217 -16.06990 -15.96967 -15.63860 -14.81612 -14.57869 -14.32730 -14.14376 -13.87024 -13.47656 -13.39119 -13.28843 -12.86737 -12.83150 -12.62885 -12.55245 -12.39860 -12.06004 -11.86075 -11.69659 -11.47134 -11.34390 -11.16804 -11.11105 -10.80660 -10.78867 -10.57683 -10.44655 -10.27171 -10.00078 -9.91305 -9.77463 -8.72506 -8.62734 -8.38974 -8.27374 -6.91558 -5.84612 -3.27269 0.56982 1.55650 2.00057 2.34420 3.13556 3.32775 3.33235 3.41057 3.43025 4.39556 4.61427 4.67901 4.87001 4.94239 5.08467 5.13100 5.19410 5.22860 5.30104 5.35897 5.43646 5.46525 5.51202 5.56449 5.66259 5.69746 5.71722 5.77655 5.84018 5.90223 5.97758 6.04364 6.11616 6.30101 6.31264 6.43632 6.48923 6.56163 6.66643 6.81230 7.19991 7.58257 7.67203 7.72684 8.24851 8.27357 9.09767 9.73941 10.21975 11.20761 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.003673 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.234530 B = 7620.748271 C = 8933.444498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.126 4.126 4 C -0.052 4.052 5 C -0.266 4.266 6 C 0.602 3.398 7 O -0.544 6.544 8 N -0.609 5.609 9 C 0.110 3.890 10 C -0.152 4.152 11 C 0.178 3.822 12 H 0.083 0.917 13 N -0.584 5.584 14 C 0.155 3.845 15 C -0.265 4.265 16 H 0.072 0.928 17 C 0.007 3.993 18 N -0.898 5.898 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.065 3.935 24 S 0.239 5.761 25 C -0.220 4.220 26 C -0.085 4.085 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.004 0.996 39 H 0.041 0.959 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -17.707 -1.677 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.138 4.138 4 C -0.086 4.086 5 C -0.386 4.386 6 C 0.391 3.609 7 O -0.425 6.425 8 N -0.342 5.342 9 C -0.013 4.013 10 C -0.192 4.192 11 C 0.067 3.933 12 H 0.101 0.899 13 N -0.304 5.304 14 C 0.011 3.989 15 C -0.394 4.394 16 H 0.090 0.910 17 C -0.192 4.192 18 N -0.541 5.541 19 Si 0.730 3.270 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.061 4.061 24 S 0.510 5.490 25 C -0.339 4.339 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.023 0.977 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.869 -16.478 -1.267 16.774 hybrid contribution -0.011 -0.771 -0.024 0.771 sum -2.880 -17.249 -1.290 17.535 Atomic orbital electron populations 1.21754 0.94976 1.01431 1.02328 1.20207 0.95853 0.91495 1.02571 1.18563 1.05523 0.98298 0.91400 1.20491 0.96678 0.91882 0.99525 1.24477 1.16524 1.00162 0.97462 1.16577 0.77269 0.79907 0.87149 1.90789 1.57205 1.76244 1.18214 1.48325 1.62343 1.14151 1.09339 1.22266 1.00073 0.86184 0.92732 1.23435 1.03162 0.95247 0.97380 1.21239 0.97244 0.87017 0.87762 0.89898 1.43917 1.02710 1.51553 1.32237 1.20816 0.82603 0.95789 0.99718 1.19183 0.93818 1.07517 1.18918 0.91040 1.24924 0.97935 0.95896 1.00466 1.70116 1.24305 1.20846 1.38856 0.86314 0.78933 0.78577 0.83155 1.21481 1.21541 1.20356 1.23011 1.01403 0.99625 0.82049 1.83964 1.58470 1.08343 0.98202 1.24511 1.07632 1.01671 1.00134 1.20376 1.02271 1.01414 0.90260 0.92536 0.92603 0.92469 0.91108 0.91167 0.83488 0.90932 0.91540 0.90579 0.90038 0.94737 0.97744 0.94027 0.93624 0.91292 0.90192 0.90647 0.91092 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.83 37.16 0.37 -0.83 16 2 C -0.06 -0.55 5.54 -27.88 -0.15 -0.70 16 3 C -0.13 -1.47 5.04 -106.45 -0.54 -2.00 16 4 C -0.05 -0.71 9.78 -40.44 -0.40 -1.10 16 5 C -0.27 -4.08 6.37 -36.79 -0.23 -4.31 16 6 C 0.60 10.60 7.81 -12.90 -0.10 10.50 16 7 O -0.54 -10.85 17.14 5.18 0.09 -10.76 16 8 N -0.61 -10.24 3.33 -172.09 -0.57 -10.82 16 9 C 0.11 1.73 6.89 -2.53 -0.02 1.71 16 10 C -0.15 -2.60 6.66 -24.58 -0.16 -2.77 16 11 C 0.18 3.36 3.45 -66.10 -0.23 3.13 16 12 H 0.08 1.53 7.91 -51.93 -0.41 1.12 16 13 N -0.58 -13.46 2.93 -171.38 -0.50 -13.96 16 14 C 0.16 3.56 7.79 59.85 0.47 4.02 16 15 C -0.27 -6.80 9.59 -15.06 -0.14 -6.95 16 16 H 0.07 1.78 7.86 -52.48 -0.41 1.37 16 17 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 18 N -0.90 -24.97 11.03 55.49 0.61 -24.36 16 19 Si 0.90 20.80 29.60 -169.99 -5.03 15.76 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 23 C 0.07 1.10 4.74 -3.07 -0.01 1.08 16 24 S 0.24 3.24 18.49 -107.50 -1.99 1.25 16 25 C -0.22 -2.57 6.28 -35.86 -0.23 -2.79 16 26 C -0.08 -0.75 9.71 36.01 0.35 -0.40 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.46 7.25 -51.93 -0.38 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.58 8.10 -51.92 -0.42 0.16 16 31 H 0.07 0.55 7.46 -51.93 -0.39 0.16 16 32 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.42 7.34 -51.93 -0.38 1.04 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.87 7.37 -51.93 -0.38 0.49 16 38 H 0.00 0.08 6.17 -51.93 -0.32 -0.24 16 39 H 0.04 1.02 7.41 -51.93 -0.38 0.64 16 40 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.07 1.10 7.52 -51.93 -0.39 0.71 16 42 H 0.08 1.40 4.15 -47.88 -0.20 1.20 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.57 6.40 -51.93 -0.33 0.24 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -29.77 366.47 -9.90 -39.67 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.91 Total: -1.01 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.12 Total: -1.30 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.46 Total: -49.13 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.99 Total: 1.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.77 -9.90 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980347210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.159 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds