Wall clock time and date at job start Tue Mar 31 2020 13:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47078 * 2 1 4 4 C 1.37474 * 122.45097 * 265.02915 * 3 2 1 5 5 C 1.36645 * 113.29691 * 179.97438 * 4 3 2 6 6 C 1.46580 * 125.45809 * 179.97438 * 5 4 3 7 7 O 1.21707 * 119.99964 * 5.20658 * 6 5 4 8 8 N 1.34779 * 119.99972 * 185.20266 * 6 5 4 9 9 C 1.47424 * 125.64687 * 184.63017 * 8 6 5 10 10 C 1.54914 * 104.83177 * 155.82655 * 9 8 6 11 11 C 1.55150 * 101.58100 * 37.00725 * 10 9 8 12 12 H 1.09007 * 110.72286 * 83.03717 * 11 10 9 13 13 N 1.46495 * 110.72227 * 206.13446 * 11 10 9 14 14 C 1.46509 * 120.00031 * 60.00070 * 13 11 10 15 15 C 1.36934 * 120.00427 * 240.00244 * 13 11 10 16 16 H 1.08004 * 120.00023 * 339.32735 * 15 13 11 17 17 C 1.38813 * 120.00190 * 159.05070 * 15 13 11 18 18 N 1.31617 * 120.00017 * 339.67093 * 17 15 13 19 19 Si 1.86800 * 120.00028 * 159.67024 * 17 15 13 20 20 H 1.48503 * 109.47089 * 94.98661 * 19 17 15 21 21 H 1.48498 * 109.46969 * 214.98540 * 19 17 15 22 22 H 1.48503 * 109.47129 * 334.98601 * 19 17 15 23 23 C 1.47018 * 125.64940 * 4.57325 * 8 6 5 24 24 S 1.75828 * 109.08455 * 0.26745 * 5 4 3 25 25 C 1.33815 * 122.44774 * 85.00624 * 3 2 1 26 26 C 1.50703 * 124.52231 * 0.05242 * 25 3 2 27 27 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46979 * 299.99487 * 1 2 3 29 29 H 1.09001 * 109.47593 * 59.99628 * 1 2 3 30 30 H 1.09008 * 109.46859 * 240.00457 * 2 1 3 31 31 H 1.08992 * 109.47541 * 120.00185 * 2 1 3 32 32 H 1.07996 * 123.35023 * 359.97438 * 4 3 2 33 33 H 1.09003 * 110.37046 * 36.98590 * 9 8 6 34 34 H 1.09000 * 110.46124 * 274.70937 * 9 8 6 35 35 H 1.09004 * 111.00247 * 278.93395 * 10 9 8 36 36 H 1.08997 * 111.03644 * 155.09744 * 10 9 8 37 37 H 1.09002 * 109.46757 * 264.63225 * 14 13 11 38 38 H 1.09002 * 109.46628 * 24.62987 * 14 13 11 39 39 H 1.08996 * 109.46979 * 144.62916 * 14 13 11 40 40 H 0.96998 * 120.00538 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.88211 * 61.69058 * 23 8 6 42 42 H 1.08993 * 109.88510 * 300.52466 * 23 8 6 43 43 H 1.09004 * 109.46394 * 90.00700 * 26 25 3 44 44 H 1.08993 * 109.47228 * 210.00184 * 26 25 3 45 45 H 1.09000 * 109.47284 * 330.00776 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3729 2.0828 -1.1557 5 6 2.8043 3.3612 -0.9392 6 6 3.2331 4.3015 -1.9787 7 8 3.1331 3.9975 -3.1530 8 7 3.7380 5.5027 -1.6341 9 6 4.1160 6.5765 -2.5708 10 6 4.0284 7.8791 -1.7370 11 6 4.5474 7.4001 -0.3555 12 1 5.6371 7.4051 -0.3300 13 7 4.0018 8.2318 0.7200 14 6 2.5526 8.3153 0.9181 15 6 4.8463 8.9313 1.5402 16 1 5.8806 8.6338 1.6304 17 6 4.3744 10.0261 2.2512 18 7 3.2761 10.6390 1.8633 19 14 5.2981 10.6296 3.7585 20 1 6.2189 11.7274 3.3682 21 1 4.3285 11.1312 4.7652 22 1 6.0812 9.5099 4.3403 23 6 4.0019 5.9596 -0.2619 24 16 2.7707 3.6947 0.7868 25 6 2.1789 2.1305 1.1250 26 6 1.8697 1.6145 2.5067 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.3062 1.6369 -2.1370 33 1 3.4178 6.6137 -3.4071 34 1 5.1329 6.4257 -2.9331 35 1 2.9987 8.2299 -1.6673 36 1 4.6754 8.6527 -2.1506 37 1 2.1655 9.1944 0.4027 38 1 2.0787 7.4201 0.5154 39 1 2.3354 8.3936 1.9833 40 1 2.9465 11.4043 2.3598 41 1 4.7426 5.3126 0.2082 42 1 3.0779 5.9499 0.3162 43 1 2.7607 1.1497 2.9287 44 1 1.5563 2.4428 3.1421 45 1 1.0684 0.8778 2.4486 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980347210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:52 Heat of formation + Delta-G solvation = 0.160761 kcal Electronic energy + Delta-G solvation = -25311.051431 eV Core-core repulsion = 21841.009591 eV Total energy + Delta-G solvation = -3470.041840 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22506 -39.82609 -38.76430 -36.50624 -33.97558 -33.38607 -32.45929 -31.63450 -29.47265 -28.10033 -28.01993 -25.50780 -24.81900 -24.50107 -22.88552 -21.15908 -20.73374 -19.19224 -19.08917 -18.89370 -17.55701 -17.11197 -16.97841 -16.45254 -15.76245 -15.48052 -15.17779 -15.10967 -14.98132 -14.67303 -14.47463 -14.31600 -14.11550 -13.78311 -13.57716 -13.37849 -13.24999 -12.96367 -12.94099 -12.82097 -12.61966 -12.54183 -12.39837 -12.37068 -12.28520 -12.07209 -11.83925 -11.80772 -11.67561 -11.25032 -11.22641 -10.59510 -9.94632 -9.47322 -9.37243 -8.83248 -7.83657 -5.27772 -0.50099 0.50104 0.98759 1.30936 1.49762 1.52971 1.61778 1.82796 2.08189 2.53436 3.27038 3.32780 3.66186 3.74271 3.85896 3.91600 4.09684 4.17276 4.22511 4.24273 4.37585 4.40576 4.53784 4.55571 4.62834 4.71456 4.72670 4.73846 4.85173 4.89527 4.91040 4.98549 5.07053 5.09121 5.15102 5.21989 5.27858 5.34038 5.35151 5.46825 5.56552 5.65327 5.71032 6.27955 6.34973 6.91924 7.13219 7.84019 8.28701 9.20444 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.003673 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.234530 B = 7620.748271 C = 8933.444498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.045 4.045 5 C -0.300 4.300 6 C 0.600 3.400 7 O -0.576 6.576 8 N -0.611 5.611 9 C 0.115 3.885 10 C -0.141 4.141 11 C 0.171 3.829 12 H 0.089 0.911 13 N -0.596 5.596 14 C 0.174 3.826 15 C -0.267 4.267 16 H 0.078 0.922 17 C -0.046 4.046 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.080 3.920 24 S 0.222 5.778 25 C -0.204 4.204 26 C -0.088 4.088 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.006 0.994 38 H 0.028 0.972 39 H 0.018 0.982 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 -20.035 -0.751 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.419 4.419 6 C 0.391 3.609 7 O -0.459 6.459 8 N -0.343 5.343 9 C -0.007 4.007 10 C -0.182 4.182 11 C 0.062 3.938 12 H 0.108 0.892 13 N -0.317 5.317 14 C 0.029 3.971 15 C -0.396 4.396 16 H 0.096 0.904 17 C -0.242 4.242 18 N -0.577 5.577 19 Si 0.790 3.210 20 H -0.216 1.216 21 H -0.223 1.223 22 H -0.192 1.192 23 C -0.046 4.046 24 S 0.493 5.507 25 C -0.324 4.324 26 C -0.146 4.146 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.024 0.976 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.383 -18.827 -0.353 18.981 hybrid contribution -0.171 -0.169 -0.334 0.411 sum -2.553 -18.996 -0.686 19.179 Atomic orbital electron populations 1.21746 0.94367 1.02497 1.01724 1.20294 0.96260 0.89582 1.03796 1.18829 1.05280 0.99726 0.90524 1.20732 0.95356 0.91422 1.00429 1.24341 1.19146 1.00605 0.97844 1.16885 0.76672 0.80112 0.87275 1.90757 1.58672 1.76915 1.19556 1.48361 1.62288 1.14280 1.09368 1.22272 1.01183 0.84987 0.92292 1.23267 1.02050 0.96174 0.96681 1.21422 0.97647 0.87437 0.87326 0.89244 1.44043 1.02427 1.51814 1.33419 1.20497 0.83074 0.95617 0.97876 1.19543 0.94330 1.07024 1.18748 0.90378 1.25633 0.99015 0.96577 1.02966 1.70262 1.26054 1.21478 1.39901 0.85352 0.77574 0.78103 0.79947 1.21592 1.22298 1.19196 1.22760 1.01380 0.98275 0.82155 1.83913 1.59366 1.10273 0.97198 1.24861 1.05743 1.00124 1.01645 1.20543 1.03638 1.02037 0.88370 0.90666 0.92590 0.93717 0.90474 0.89419 0.83403 0.90833 0.89694 0.92376 0.89329 0.97569 0.95327 0.96333 0.94282 0.90088 0.90756 0.89048 0.90753 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.83 71.98 0.71 -1.26 16 2 C -0.06 -0.88 5.54 29.85 0.17 -0.72 16 3 C -0.13 -2.80 5.04 -21.05 -0.11 -2.91 16 4 C -0.04 -1.18 9.78 21.72 0.21 -0.96 16 5 C -0.30 -9.02 6.37 24.07 0.15 -8.87 16 6 C 0.60 21.00 7.81 86.42 0.67 21.67 16 7 O -0.58 -23.05 17.14 -4.37 -0.07 -23.12 16 8 N -0.61 -20.18 3.33 -816.59 -2.72 -22.89 16 9 C 0.11 3.51 6.89 86.86 0.60 4.11 16 10 C -0.14 -4.79 6.66 31.99 0.21 -4.58 16 11 C 0.17 6.31 3.45 46.18 0.16 6.47 16 12 H 0.09 3.19 7.91 -2.38 -0.02 3.17 16 13 N -0.60 -27.47 2.93 -696.14 -2.04 -29.51 16 14 C 0.17 8.13 7.79 127.77 0.99 9.13 16 15 C -0.27 -13.60 9.59 84.03 0.81 -12.80 16 16 H 0.08 3.81 7.86 -2.91 -0.02 3.79 16 17 C -0.05 -2.44 4.94 84.86 0.42 -2.02 16 18 N -0.93 -52.90 11.03 21.65 0.24 -52.66 16 19 Si 0.96 42.89 29.60 68.60 2.03 44.92 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 C 0.08 2.63 4.74 86.73 0.41 3.04 16 24 S 0.22 5.75 18.49 -56.49 -1.04 4.71 16 25 C -0.20 -4.29 6.28 24.68 0.15 -4.14 16 26 C -0.09 -1.26 9.71 71.24 0.69 -0.57 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 7.25 -2.39 -0.02 0.73 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.06 8.10 -2.38 -0.02 1.04 16 31 H 0.09 1.01 7.46 -2.39 -0.02 1.00 16 32 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.19 7.34 -2.39 -0.02 2.17 16 36 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.01 0.32 7.37 -2.39 -0.02 0.30 16 38 H 0.03 1.16 6.17 -2.39 -0.01 1.15 16 39 H 0.02 0.92 7.41 -2.39 -0.02 0.90 16 40 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 41 H 0.08 2.47 7.52 -2.38 -0.02 2.46 16 42 H 0.07 2.56 4.15 -4.97 -0.02 2.54 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.09 1.05 6.40 -2.39 -0.02 1.03 16 Total: -1.00 -64.13 366.47 3.62 -60.51 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.97 Total: 12.45 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 6.26 Total: 5.61 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.52 Total: -105.07 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.07 Total: -23.12 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.04 Total: 4.71 kcal Total: -64.13 3.62 -60.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980347210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.667 kcal (2) G-P(sol) polarization free energy of solvation -64.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds