Wall clock time and date at job start Tue Mar 31 2020 13:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47084 * 2 1 4 4 C 1.33808 * 124.52164 * 89.99920 * 3 2 1 5 5 C 1.37474 * 115.10018 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29813 * 359.97438 * 5 4 3 7 7 C 1.46579 * 125.46198 * 180.02562 * 6 5 4 8 8 O 1.21703 * 119.99810 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00170 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27960 * 9 7 6 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.53003 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47087 * 59.99958 * 13 12 10 15 15 C 1.52997 * 109.47114 * 300.00120 * 14 13 12 16 16 H 1.09004 * 109.46812 * 300.00187 * 15 14 13 17 17 N 1.46503 * 109.47302 * 180.02562 * 15 14 13 18 18 C 1.36934 * 119.99974 * 84.99824 * 17 15 14 19 19 H 1.08002 * 120.00358 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99675 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99705 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00150 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47345 * 89.99804 * 22 20 18 24 24 H 1.48497 * 109.46893 * 210.00216 * 22 20 18 25 25 H 1.48501 * 109.46900 * 329.99881 * 22 20 18 26 26 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 27 27 S 1.70614 * 124.52095 * 270.27428 * 3 2 1 28 28 H 1.09000 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47408 * 300.00021 * 1 2 3 30 30 H 1.08999 * 109.46942 * 60.00610 * 1 2 3 31 31 H 1.09000 * 109.47118 * 239.99803 * 2 1 3 32 32 H 1.08997 * 109.46843 * 119.99918 * 2 1 3 33 33 H 1.07997 * 122.45464 * 359.94082 * 4 3 2 34 34 H 1.08000 * 123.35312 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 37 37 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 38 38 H 1.08995 * 109.46928 * 299.99922 * 13 12 10 39 39 H 1.09000 * 109.47191 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.47147 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47266 * 60.00171 * 14 13 12 42 42 H 0.96995 * 119.99605 * 265.00178 * 17 15 14 43 43 H 0.96996 * 119.99704 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.46923 * 299.99333 * 26 10 9 45 45 H 1.08995 * 109.47266 * 59.99845 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7377 3.4142 0.8774 6 6 2.8479 3.7229 -0.4492 7 6 3.3035 5.0075 -0.9884 8 8 3.6220 5.9063 -0.2322 9 7 3.3697 5.1933 -2.3217 10 6 3.8308 6.4752 -2.8606 11 1 4.6015 6.8871 -2.2090 12 6 2.6536 7.4494 -2.9370 13 6 3.1350 8.7880 -3.5004 14 6 3.7116 8.5739 -4.9013 15 6 4.8888 7.5997 -4.8249 16 1 5.6598 8.0118 -4.1737 17 7 5.4414 7.3951 -6.1662 18 6 6.3683 8.2706 -6.6657 19 1 6.6917 9.1122 -6.0710 20 6 6.8913 8.0771 -7.9369 21 7 7.7819 8.9189 -8.4172 22 14 6.3303 6.6227 -8.9663 23 1 5.1533 7.0176 -9.7810 24 1 7.4337 6.1970 -9.8643 25 1 5.9580 5.4974 -8.0717 26 6 4.4078 6.2616 -4.2614 27 16 2.3483 2.3347 -1.4057 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1434 1.7379 2.0964 34 1 2.9819 4.1059 1.6702 35 1 3.1161 4.4768 -2.9244 36 1 1.8828 7.0375 -3.5885 37 1 2.2425 7.6016 -1.9390 38 1 3.9059 9.2000 -2.8492 39 1 2.2964 9.4822 -3.5544 40 1 4.0550 9.5275 -5.3025 41 1 2.9407 8.1619 -5.5524 42 1 5.1506 6.6396 -6.7004 43 1 8.1477 8.7834 -9.3053 44 1 5.2465 5.5676 -4.2069 45 1 3.6370 5.8497 -4.9128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981206204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:36 Heat of formation + Delta-G solvation = -16.067215 kcal Electronic energy + Delta-G solvation = -24315.666893 eV Core-core repulsion = 20844.921354 eV Total energy + Delta-G solvation = -3470.745538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11655 -38.57943 -37.75576 -34.82739 -34.16131 -33.40265 -31.35064 -30.08933 -28.83934 -28.06309 -25.57528 -23.54562 -22.85363 -22.43753 -21.74764 -20.52852 -19.98091 -19.25818 -18.19642 -17.43423 -16.60340 -15.99058 -15.49910 -15.20941 -14.75587 -14.54380 -14.43808 -14.20898 -13.92388 -13.76005 -13.49014 -13.40022 -13.11753 -12.73433 -12.66496 -12.39030 -12.24592 -12.18090 -11.97071 -11.59616 -11.27450 -11.19259 -11.04390 -10.99308 -10.86562 -10.43039 -10.34146 -10.31557 -10.05659 -9.78920 -9.59031 -9.18859 -8.94775 -8.91480 -8.87527 -7.27704 -5.76825 -3.12580 0.20192 1.11687 1.54191 2.09596 3.00801 3.07440 3.36235 3.38817 3.44530 4.20209 4.52726 4.58454 4.61390 4.76018 4.83829 4.91635 4.99187 5.06563 5.22051 5.24463 5.34651 5.42790 5.44460 5.50061 5.55637 5.61141 5.67865 5.68664 5.77393 5.79888 5.84366 5.92607 6.04090 6.05821 6.19615 6.21398 6.36402 6.46178 6.50654 6.63718 6.88235 7.02358 7.35508 7.99733 8.05079 8.42207 9.20451 9.92849 10.12547 11.41519 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002646 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.689777 B =10581.345625 C =11567.945789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.192 4.192 4 C -0.154 4.154 5 C -0.053 4.053 6 C -0.265 4.265 7 C 0.590 3.410 8 O -0.529 6.529 9 N -0.720 5.720 10 C 0.150 3.850 11 H 0.093 0.907 12 C -0.125 4.125 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.188 3.812 16 H 0.058 0.942 17 N -0.748 5.748 18 C -0.241 4.241 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.134 4.134 27 S 0.199 5.801 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.070 0.930 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.472 -17.868 18.276 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.312 4.312 4 C -0.184 4.184 5 C -0.086 4.086 6 C -0.386 4.386 7 C 0.375 3.625 8 O -0.407 6.407 9 N -0.370 5.370 10 C 0.046 3.954 11 H 0.111 0.889 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.079 3.921 16 H 0.076 0.924 17 N -0.390 5.390 18 C -0.371 4.371 19 H 0.109 0.891 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.173 4.173 27 S 0.467 5.533 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.149 -17.306 17.189 29.253 hybrid contribution -0.379 -1.137 0.411 1.267 sum -16.528 -18.443 17.600 30.382 Atomic orbital electron populations 1.21807 0.93980 1.02253 1.02655 1.20169 0.96424 0.89342 1.03632 1.24269 1.07065 1.02076 0.97776 1.19956 1.04769 0.94127 0.99582 1.20758 0.96421 0.96200 0.95243 1.24656 1.16334 0.99483 0.98101 1.16949 0.77571 0.85491 0.82450 1.90835 1.49096 1.42751 1.58003 1.46047 1.67807 1.17104 1.06025 1.21065 0.96728 0.82257 0.95357 0.88942 1.21900 0.97512 0.95910 1.01018 1.21479 1.00393 0.95767 0.97663 1.22256 0.98883 1.01684 0.94918 1.20058 0.93581 0.91194 0.87315 0.92406 1.42761 1.50389 1.31560 1.14312 1.19077 1.14168 1.05067 0.98823 0.89131 1.24681 0.98919 0.98332 0.97312 1.69702 1.32565 1.37831 1.18070 0.86543 0.77958 0.83366 0.80604 1.21147 1.21810 1.20385 1.22138 1.00746 1.00356 0.94057 1.83016 1.59829 1.02706 1.07721 0.91802 0.92149 0.92323 0.90524 0.89736 0.83888 0.82939 0.77088 0.92047 0.91957 0.91903 0.92264 0.91315 0.92744 0.80734 0.93084 0.91137 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.90 37.16 0.37 -0.33 16 2 C -0.06 -0.30 6.37 -27.88 -0.18 -0.47 16 3 C -0.19 -1.45 5.53 -35.86 -0.20 -1.65 16 4 C -0.15 -1.23 9.99 -41.41 -0.41 -1.64 16 5 C -0.05 -0.53 10.01 -40.43 -0.40 -0.94 16 6 C -0.27 -2.94 6.45 -36.79 -0.24 -3.18 16 7 C 0.59 8.01 7.75 -12.90 -0.10 7.91 16 8 O -0.53 -8.93 16.50 5.19 0.09 -8.85 16 9 N -0.72 -8.80 5.07 -55.15 -0.28 -9.08 16 10 C 0.15 2.06 2.46 -67.93 -0.17 1.90 16 11 H 0.09 1.43 7.57 -51.93 -0.39 1.04 16 12 C -0.12 -1.64 5.50 -26.73 -0.15 -1.79 16 13 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.14 -2.32 5.50 -26.73 -0.15 -2.46 16 15 C 0.19 3.50 2.77 -67.95 -0.19 3.32 16 16 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 17 N -0.75 -17.27 4.93 -53.45 -0.26 -17.53 16 18 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 22 Si 0.88 21.90 27.74 -169.99 -4.71 17.18 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 26 C -0.13 -2.01 4.86 -26.75 -0.13 -2.14 16 27 S 0.20 1.65 22.10 -107.50 -2.38 -0.72 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.40 3.99 7.72 -40.82 -0.31 3.67 16 36 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -32.78 377.31 -10.73 -43.52 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.29 Total: 8.38 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.35 Total: -10.12 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.23 Total: -55.08 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.38 Total: -0.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.78 -10.73 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981206204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.449 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds