Wall clock time and date at job start Tue Mar 31 2020 13:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47084 * 2 1 4 4 C 1.33808 * 124.52164 * 89.99920 * 3 2 1 5 5 C 1.37474 * 115.10018 * 179.97438 * 4 3 2 6 6 C 1.36650 * 113.29813 * 359.97438 * 5 4 3 7 7 C 1.46579 * 125.46198 * 180.02562 * 6 5 4 8 8 O 1.21703 * 119.99810 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00170 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27960 * 9 7 6 11 11 H 1.09004 * 109.47372 * 34.71852 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72131 * 10 9 7 13 13 C 1.53003 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47087 * 59.99958 * 13 12 10 15 15 C 1.52997 * 109.47114 * 300.00120 * 14 13 12 16 16 H 1.09004 * 109.46812 * 300.00187 * 15 14 13 17 17 N 1.46503 * 109.47302 * 180.02562 * 15 14 13 18 18 C 1.36934 * 119.99974 * 84.99824 * 17 15 14 19 19 H 1.08002 * 120.00358 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99675 * 180.02562 * 18 17 15 21 21 N 1.31622 * 119.99705 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00150 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47345 * 89.99804 * 22 20 18 24 24 H 1.48497 * 109.46893 * 210.00216 * 22 20 18 25 25 H 1.48501 * 109.46900 * 329.99881 * 22 20 18 26 26 C 1.52999 * 109.46963 * 154.72290 * 10 9 7 27 27 S 1.70614 * 124.52095 * 270.27428 * 3 2 1 28 28 H 1.09000 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47408 * 300.00021 * 1 2 3 30 30 H 1.08999 * 109.46942 * 60.00610 * 1 2 3 31 31 H 1.09000 * 109.47118 * 239.99803 * 2 1 3 32 32 H 1.08997 * 109.46843 * 119.99918 * 2 1 3 33 33 H 1.07997 * 122.45464 * 359.94082 * 4 3 2 34 34 H 1.08000 * 123.35312 * 179.97438 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.09009 * 109.47238 * 300.00198 * 12 10 9 37 37 H 1.08997 * 109.47293 * 60.00168 * 12 10 9 38 38 H 1.08995 * 109.46928 * 299.99922 * 13 12 10 39 39 H 1.09000 * 109.47191 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.47147 * 180.02562 * 14 13 12 41 41 H 1.08995 * 109.47266 * 60.00171 * 14 13 12 42 42 H 0.96995 * 119.99605 * 265.00178 * 17 15 14 43 43 H 0.96996 * 119.99704 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.46923 * 299.99333 * 26 10 9 45 45 H 1.08995 * 109.47266 * 59.99845 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2851 2.1358 1.1025 5 6 2.7377 3.4142 0.8774 6 6 2.8479 3.7229 -0.4492 7 6 3.3035 5.0075 -0.9884 8 8 3.6220 5.9063 -0.2322 9 7 3.3697 5.1933 -2.3217 10 6 3.8308 6.4752 -2.8606 11 1 4.6015 6.8871 -2.2090 12 6 2.6536 7.4494 -2.9370 13 6 3.1350 8.7880 -3.5004 14 6 3.7116 8.5739 -4.9013 15 6 4.8888 7.5997 -4.8249 16 1 5.6598 8.0118 -4.1737 17 7 5.4414 7.3951 -6.1662 18 6 6.3683 8.2706 -6.6657 19 1 6.6917 9.1122 -6.0710 20 6 6.8913 8.0771 -7.9369 21 7 7.7819 8.9189 -8.4172 22 14 6.3303 6.6227 -8.9663 23 1 5.1533 7.0176 -9.7810 24 1 7.4337 6.1970 -9.8643 25 1 5.9580 5.4974 -8.0717 26 6 4.4078 6.2616 -4.2614 27 16 2.3483 2.3347 -1.4057 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1434 1.7379 2.0964 34 1 2.9819 4.1059 1.6702 35 1 3.1161 4.4768 -2.9244 36 1 1.8828 7.0375 -3.5885 37 1 2.2425 7.6016 -1.9390 38 1 3.9059 9.2000 -2.8492 39 1 2.2964 9.4822 -3.5544 40 1 4.0550 9.5275 -5.3025 41 1 2.9407 8.1619 -5.5524 42 1 5.1506 6.6396 -6.7004 43 1 8.1477 8.7834 -9.3053 44 1 5.2465 5.5676 -4.2069 45 1 3.6370 5.8497 -4.9128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981206204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:35 Heat of formation + Delta-G solvation = -36.402780 kcal Electronic energy + Delta-G solvation = -24316.548709 eV Core-core repulsion = 20844.921354 eV Total energy + Delta-G solvation = -3471.627355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19282 -39.59094 -38.72523 -36.36895 -34.93413 -34.62457 -33.27731 -31.18897 -30.13043 -29.15440 -26.25893 -25.40663 -23.69343 -23.23941 -22.99634 -21.77079 -21.22375 -20.33754 -19.53110 -18.83738 -17.59066 -16.91930 -16.59851 -16.34089 -16.21064 -15.60637 -15.41273 -15.15441 -15.09508 -14.92791 -14.88458 -14.51588 -14.33245 -13.90328 -13.72799 -13.53091 -13.26942 -13.04623 -12.90585 -12.81324 -12.43059 -12.40304 -12.22606 -12.08636 -12.00441 -11.82019 -11.72711 -11.69938 -11.57154 -11.46873 -11.06491 -10.91100 -10.23792 -9.65723 -9.54618 -9.30829 -8.00471 -5.34449 -0.53270 0.44055 0.87779 1.36866 1.38723 1.43439 1.50609 1.99762 2.13853 2.50446 3.30560 3.42321 3.67265 3.75896 3.81080 3.98660 4.12417 4.14025 4.24830 4.33125 4.35059 4.40453 4.47596 4.48403 4.53361 4.61937 4.72769 4.79265 4.91922 4.93982 5.03979 5.06846 5.11157 5.15144 5.17904 5.20469 5.32939 5.34849 5.36837 5.42057 5.47858 5.59826 5.79269 6.23259 6.38605 7.05730 7.09593 7.84608 8.05496 9.21191 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.002646 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.689777 B =10581.345625 C =11567.945789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.163 4.163 5 C -0.054 4.054 6 C -0.302 4.302 7 C 0.589 3.411 8 O -0.572 6.572 9 N -0.710 5.710 10 C 0.157 3.843 11 H 0.070 0.930 12 C -0.116 4.116 13 C -0.107 4.107 14 C -0.128 4.128 15 C 0.181 3.819 16 H 0.035 0.965 17 N -0.749 5.749 18 C -0.228 4.228 19 H 0.052 0.948 20 C -0.069 4.069 21 N -0.986 5.986 22 Si 0.959 3.041 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.247 1.247 26 C -0.120 4.120 27 S 0.230 5.770 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.408 0.592 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.140 -21.451 18.615 34.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.302 4.302 4 C -0.192 4.192 5 C -0.088 4.088 6 C -0.423 4.423 7 C 0.376 3.624 8 O -0.454 6.454 9 N -0.360 5.360 10 C 0.052 3.948 11 H 0.088 0.912 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.168 4.168 15 C 0.073 3.927 16 H 0.054 0.946 17 N -0.392 5.392 18 C -0.359 4.359 19 H 0.070 0.930 20 C -0.260 4.260 21 N -0.637 5.637 22 Si 0.786 3.214 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.171 1.171 26 C -0.159 4.159 27 S 0.499 5.501 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.244 0.756 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.868 -20.930 17.556 33.201 hybrid contribution 0.446 -0.020 0.423 0.615 sum -18.422 -20.950 17.979 33.189 Atomic orbital electron populations 1.21811 0.93438 1.03109 1.02285 1.20317 0.96763 0.87785 1.04854 1.24697 1.05264 1.02989 0.97300 1.20114 1.04917 0.93297 1.00904 1.20934 0.95880 0.97057 0.94907 1.24488 1.18901 0.99734 0.99129 1.17290 0.76743 0.85993 0.82329 1.90805 1.51178 1.44461 1.58942 1.45854 1.67343 1.16830 1.06005 1.20823 0.96585 0.83224 0.94135 0.91184 1.21823 0.97427 0.95009 1.01214 1.21406 1.00707 0.96930 0.95497 1.22085 0.98267 0.99588 0.96886 1.20248 0.93614 0.93857 0.85021 0.94645 1.42715 1.49737 1.30872 1.15913 1.18992 1.14180 1.04391 0.98322 0.92976 1.25562 0.99537 1.01946 0.98936 1.69902 1.34741 1.40513 1.18555 0.85351 0.77179 0.80169 0.78717 1.20413 1.22598 1.17097 1.21941 1.01324 0.97812 0.94834 1.82831 1.58959 1.01023 1.07309 0.90396 0.92386 0.92859 0.89608 0.88255 0.81757 0.83549 0.75565 0.90173 0.92153 0.92718 0.90352 0.94215 0.91612 0.79950 0.93438 0.91345 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.90 71.98 0.71 -0.23 16 2 C -0.06 -0.41 6.37 29.85 0.19 -0.22 16 3 C -0.18 -2.24 5.53 24.68 0.14 -2.11 16 4 C -0.16 -2.24 9.99 21.08 0.21 -2.03 16 5 C -0.05 -1.03 10.01 21.72 0.22 -0.81 16 6 C -0.30 -6.39 6.45 24.08 0.16 -6.24 16 7 C 0.59 15.74 7.75 86.42 0.67 16.41 16 8 O -0.57 -19.74 16.50 -4.36 -0.07 -19.81 16 9 N -0.71 -16.34 5.07 -446.60 -2.27 -18.60 16 10 C 0.16 4.16 2.46 44.99 0.11 4.27 16 11 H 0.07 2.21 7.57 -2.39 -0.02 2.19 16 12 C -0.12 -2.85 5.50 30.59 0.17 -2.68 16 13 C -0.11 -2.87 5.92 30.59 0.18 -2.69 16 14 C -0.13 -4.26 5.50 30.59 0.17 -4.09 16 15 C 0.18 6.70 2.77 44.98 0.12 6.83 16 16 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 17 N -0.75 -34.19 4.93 -323.00 -1.59 -35.78 16 18 C -0.23 -12.99 10.41 84.03 0.87 -12.12 16 19 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 21 N -0.99 -63.76 13.97 21.65 0.30 -63.46 16 22 Si 0.96 44.94 27.74 68.60 1.90 46.85 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 25 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 26 C -0.12 -3.39 4.86 30.58 0.15 -3.25 16 27 S 0.23 3.26 22.10 -56.49 -1.25 2.01 16 28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.41 7.24 7.72 -92.71 -0.72 6.53 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.37 15.70 5.66 -92.71 -0.52 15.18 16 43 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -73.61 377.31 1.25 -72.36 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.31 Total: 28.99 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 4.53 Total: -12.56 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -3.55 Total: -117.83 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.07 Total: -19.81 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.25 Total: 2.01 kcal Total: -73.61 1.25 -72.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981206204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.954 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds