Wall clock time and date at job start Tue Mar 31 2020 13:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47309 * 2 1 4 4 C 1.33819 * 124.51866 * 90.00399 * 3 2 1 5 5 C 1.37470 * 115.10221 * 179.97438 * 4 3 2 6 6 C 1.36647 * 113.29600 * 0.02562 * 5 4 3 7 7 C 1.46588 * 125.45877 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99989 * 179.72278 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27576 * 9 7 6 11 11 H 1.08999 * 109.46621 * 324.99673 * 10 9 7 12 12 C 1.52998 * 109.47145 * 84.99285 * 10 9 7 13 13 C 1.53000 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.53012 * 109.46983 * 300.00353 * 13 12 10 15 15 C 1.52998 * 109.46968 * 60.00003 * 14 13 12 16 16 H 1.09001 * 109.46820 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47262 * 60.00102 * 15 14 13 18 18 C 1.36932 * 120.00082 * 85.00124 * 17 15 14 19 19 H 1.08002 * 119.99762 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99980 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00138 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46807 * 90.00035 * 22 20 18 24 24 H 1.48498 * 109.46805 * 210.00012 * 22 20 18 25 25 H 1.48500 * 109.47074 * 329.99899 * 22 20 18 26 26 C 1.52995 * 109.47290 * 204.99666 * 10 9 7 27 27 S 1.70616 * 124.52823 * 270.31094 * 3 2 1 28 28 H 1.08997 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46784 * 299.99584 * 1 2 3 30 30 H 1.09001 * 109.46937 * 59.99000 * 1 2 3 31 31 H 1.09000 * 109.46784 * 240.00416 * 2 1 3 32 32 H 1.09001 * 109.46937 * 120.01000 * 2 1 3 33 33 H 1.08004 * 122.45316 * 0.02562 * 4 3 2 34 34 H 1.08001 * 123.35353 * 180.02562 * 5 4 3 35 35 H 0.97000 * 119.99736 * 0.26848 * 9 7 6 36 36 H 1.09001 * 109.47335 * 300.00029 * 12 10 9 37 37 H 1.08999 * 109.47045 * 60.00647 * 12 10 9 38 38 H 1.08993 * 109.47425 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47384 * 60.00085 * 13 12 10 40 40 H 1.08998 * 109.46841 * 300.00064 * 14 13 12 41 41 H 1.08998 * 109.46885 * 180.02562 * 14 13 12 42 42 H 0.96999 * 119.99479 * 264.99356 * 17 15 14 43 43 H 0.97007 * 120.00417 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46913 * 299.99975 * 26 10 9 45 45 H 1.09002 * 109.46851 * 59.99863 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7378 3.4141 0.8777 6 6 2.8469 3.7232 -0.4489 7 6 3.3013 5.0084 -0.9880 8 8 3.6188 5.9075 -0.2317 9 7 3.3722 5.1927 -2.3213 10 6 3.8320 6.4750 -2.8601 11 1 3.4923 7.2837 -2.2130 12 6 5.3606 6.4821 -2.9254 13 6 5.8409 7.8216 -3.4875 14 6 5.2693 8.0192 -4.8930 15 6 3.7408 8.0121 -4.8276 16 1 3.3337 8.1524 -5.8290 17 7 3.2841 9.0987 -3.9576 18 6 3.1257 10.3609 -4.4643 19 1 3.3377 10.5554 -5.5053 20 6 2.6925 11.3904 -3.6401 21 7 2.4336 11.1532 -2.3716 22 14 2.4770 13.1125 -4.3312 23 1 1.0914 13.2713 -4.8411 24 1 2.7280 14.1104 -3.2606 25 1 3.4403 13.3244 -5.4413 26 6 3.2606 6.6720 -4.2656 27 16 2.3476 2.3351 -1.4056 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 2.1448 1.7372 2.0966 34 1 2.9828 4.1054 1.6705 35 1 3.1189 4.4761 -2.9240 36 1 5.7677 6.3418 -1.9240 37 1 5.7004 5.6734 -3.5724 38 1 6.9298 7.8265 -3.5344 39 1 5.5011 8.6301 -2.8402 40 1 5.6091 7.2107 -5.5403 41 1 5.6118 8.9732 -5.2937 42 1 3.0940 8.9240 -3.0226 43 1 2.1305 11.8726 -1.7957 44 1 3.6004 5.8633 -4.9125 45 1 2.1716 6.6670 -4.2190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981206205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:40 Heat of formation + Delta-G solvation = -15.397153 kcal Electronic energy + Delta-G solvation = -24744.464025 eV Core-core repulsion = 21273.747542 eV Total energy + Delta-G solvation = -3470.716482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.90436 -38.46527 -37.61917 -34.45005 -34.03482 -33.00886 -30.91534 -29.87272 -28.54698 -27.87648 -25.43221 -23.63585 -22.75676 -22.29298 -21.84764 -20.77808 -19.56641 -18.50514 -17.81462 -17.23263 -16.36624 -15.73643 -15.31074 -14.92848 -14.61470 -14.58695 -14.38762 -13.97643 -13.66331 -13.58303 -13.52074 -13.21895 -12.93732 -12.54738 -12.42715 -12.09977 -12.00388 -11.85445 -11.74111 -11.48719 -11.35751 -11.07788 -10.87107 -10.79115 -10.70342 -10.22093 -10.15801 -10.04682 -9.96129 -9.55285 -9.46865 -8.97088 -8.83244 -8.78877 -8.67367 -6.89924 -5.69775 -2.99103 0.35874 1.25641 1.67687 2.25832 3.24986 3.30803 3.47075 3.51974 3.54093 4.31450 4.62488 4.63852 4.81919 4.85762 5.03956 5.16256 5.20351 5.25530 5.33879 5.43074 5.51265 5.55095 5.64146 5.72971 5.75118 5.78221 5.82464 5.87575 5.92914 5.98965 6.11679 6.14429 6.18851 6.22604 6.40235 6.47053 6.65143 6.70439 6.83146 6.88528 7.05376 7.14627 7.60598 7.75446 8.31786 8.47950 9.58977 10.16755 10.50985 11.52363 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.002725 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.096917 B =10272.110233 C =10691.857025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.151 4.151 5 C -0.056 4.056 6 C -0.258 4.258 7 C 0.585 3.415 8 O -0.520 6.520 9 N -0.720 5.720 10 C 0.146 3.854 11 H 0.102 0.898 12 C -0.120 4.120 13 C -0.109 4.109 14 C -0.135 4.135 15 C 0.180 3.820 16 H 0.051 0.949 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.128 4.128 27 S 0.194 5.806 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.391 0.609 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.061 0.939 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -25.255 2.176 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.316 4.316 4 C -0.182 4.182 5 C -0.089 4.089 6 C -0.379 4.379 7 C 0.370 3.630 8 O -0.397 6.397 9 N -0.370 5.370 10 C 0.043 3.957 11 H 0.119 0.881 12 C -0.159 4.159 13 C -0.147 4.147 14 C -0.176 4.176 15 C 0.069 3.931 16 H 0.069 0.931 17 N -0.364 5.364 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.167 4.167 27 S 0.462 5.538 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.225 0.775 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.234 -24.705 1.058 24.729 hybrid contribution -0.199 0.833 1.340 1.591 sum 0.035 -23.872 2.398 23.992 Atomic orbital electron populations 1.21811 0.94034 1.02141 1.02753 1.20143 0.96393 0.89403 1.03444 1.24228 1.07524 1.02028 0.97789 1.19952 1.04615 0.94126 0.99525 1.20778 0.96596 0.96182 0.95364 1.24721 1.15700 0.99406 0.98026 1.16974 0.77897 0.85496 0.82644 1.90884 1.48659 1.42250 1.57888 1.46060 1.67863 1.17217 1.05900 1.21116 0.94055 0.84704 0.95833 0.88059 1.21851 0.94940 0.98372 1.00747 1.21359 0.98579 0.96910 0.97898 1.22182 0.99132 1.00387 0.95870 1.20159 0.91786 0.86631 0.94525 0.93065 1.42511 1.79478 1.04829 1.09595 1.19217 1.37471 0.85819 0.94522 0.91227 1.24738 1.02424 0.98017 0.95733 1.69669 1.51969 1.31848 1.04307 0.86233 0.77718 0.84866 0.77616 1.21857 1.21868 1.20851 1.22098 1.00965 0.99125 0.94543 1.82890 1.60217 1.02823 1.07914 0.91895 0.92114 0.92297 0.90658 0.89851 0.83964 0.82891 0.77521 0.92242 0.92754 0.93245 0.90284 0.93879 0.91967 0.78022 0.93513 0.92027 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.05 -0.33 6.36 -27.88 -0.18 -0.51 16 3 C -0.20 -1.70 5.53 -35.86 -0.20 -1.90 16 4 C -0.15 -1.43 9.99 -41.41 -0.41 -1.85 16 5 C -0.06 -0.68 10.01 -40.44 -0.40 -1.08 16 6 C -0.26 -3.37 6.45 -36.79 -0.24 -3.61 16 7 C 0.58 9.55 7.75 -12.89 -0.10 9.45 16 8 O -0.52 -10.71 16.50 5.19 0.09 -10.62 16 9 N -0.72 -10.48 5.07 -55.15 -0.28 -10.76 16 10 C 0.15 2.48 2.28 -67.93 -0.15 2.32 16 11 H 0.10 2.17 5.94 -51.93 -0.31 1.87 16 12 C -0.12 -1.94 5.49 -26.73 -0.15 -2.09 16 13 C -0.11 -1.93 5.77 -26.73 -0.15 -2.09 16 14 C -0.14 -2.39 5.61 -26.73 -0.15 -2.54 16 15 C 0.18 3.47 3.10 -67.91 -0.21 3.26 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 N -0.72 -17.83 4.28 -53.40 -0.23 -18.05 16 18 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 22 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.13 -2.06 5.08 -26.71 -0.14 -2.20 16 27 S 0.19 1.83 22.10 -107.50 -2.38 -0.55 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.39 4.51 7.72 -40.82 -0.31 4.20 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.69 7.60 -51.93 -0.39 1.29 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.38 10.31 6.06 -40.82 -0.25 10.06 16 43 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -32.65 376.00 -10.94 -43.59 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -7.15 Total: 11.51 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.36 Total: -10.52 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.22 Total: -56.70 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.38 Total: -0.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.65 -10.94 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981206205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.195 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds