Wall clock time and date at job start Tue Mar 31 2020 13:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50696 * 109.47309 * 2 1 4 4 C 1.33819 * 124.51866 * 90.00399 * 3 2 1 5 5 C 1.37470 * 115.10221 * 179.97438 * 4 3 2 6 6 C 1.36647 * 113.29600 * 0.02562 * 5 4 3 7 7 C 1.46588 * 125.45877 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99989 * 179.72278 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27576 * 9 7 6 11 11 H 1.08999 * 109.46621 * 324.99673 * 10 9 7 12 12 C 1.52998 * 109.47145 * 84.99285 * 10 9 7 13 13 C 1.53000 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.53012 * 109.46983 * 300.00353 * 13 12 10 15 15 C 1.52998 * 109.46968 * 60.00003 * 14 13 12 16 16 H 1.09001 * 109.46820 * 180.02562 * 15 14 13 17 17 N 1.46501 * 109.47262 * 60.00102 * 15 14 13 18 18 C 1.36932 * 120.00082 * 85.00124 * 17 15 14 19 19 H 1.08002 * 119.99762 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99980 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00138 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46807 * 90.00035 * 22 20 18 24 24 H 1.48498 * 109.46805 * 210.00012 * 22 20 18 25 25 H 1.48500 * 109.47074 * 329.99899 * 22 20 18 26 26 C 1.52995 * 109.47290 * 204.99666 * 10 9 7 27 27 S 1.70616 * 124.52823 * 270.31094 * 3 2 1 28 28 H 1.08997 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46784 * 299.99584 * 1 2 3 30 30 H 1.09001 * 109.46937 * 59.99000 * 1 2 3 31 31 H 1.09000 * 109.46784 * 240.00416 * 2 1 3 32 32 H 1.09001 * 109.46937 * 120.01000 * 2 1 3 33 33 H 1.08004 * 122.45316 * 0.02562 * 4 3 2 34 34 H 1.08001 * 123.35353 * 180.02562 * 5 4 3 35 35 H 0.97000 * 119.99736 * 0.26848 * 9 7 6 36 36 H 1.09001 * 109.47335 * 300.00029 * 12 10 9 37 37 H 1.08999 * 109.47045 * 60.00647 * 12 10 9 38 38 H 1.08993 * 109.47425 * 180.02562 * 13 12 10 39 39 H 1.08998 * 109.47384 * 60.00085 * 13 12 10 40 40 H 1.08998 * 109.46841 * 300.00064 * 14 13 12 41 41 H 1.08998 * 109.46885 * 180.02562 * 14 13 12 42 42 H 0.96999 * 119.99479 * 264.99356 * 17 15 14 43 43 H 0.97007 * 120.00417 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46913 * 299.99975 * 26 10 9 45 45 H 1.09002 * 109.46851 * 59.99863 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2852 2.1357 1.1026 5 6 2.7378 3.4141 0.8777 6 6 2.8469 3.7232 -0.4489 7 6 3.3013 5.0084 -0.9880 8 8 3.6188 5.9075 -0.2317 9 7 3.3722 5.1927 -2.3213 10 6 3.8320 6.4750 -2.8601 11 1 3.4923 7.2837 -2.2130 12 6 5.3606 6.4821 -2.9254 13 6 5.8409 7.8216 -3.4875 14 6 5.2693 8.0192 -4.8930 15 6 3.7408 8.0121 -4.8276 16 1 3.3337 8.1524 -5.8290 17 7 3.2841 9.0987 -3.9576 18 6 3.1257 10.3609 -4.4643 19 1 3.3377 10.5554 -5.5053 20 6 2.6925 11.3904 -3.6401 21 7 2.4336 11.1532 -2.3716 22 14 2.4770 13.1125 -4.3312 23 1 1.0914 13.2713 -4.8411 24 1 2.7280 14.1104 -3.2606 25 1 3.4403 13.3244 -5.4413 26 6 3.2606 6.6720 -4.2656 27 16 2.3476 2.3351 -1.4056 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 2.1448 1.7372 2.0966 34 1 2.9828 4.1054 1.6705 35 1 3.1189 4.4761 -2.9240 36 1 5.7677 6.3418 -1.9240 37 1 5.7004 5.6734 -3.5724 38 1 6.9298 7.8265 -3.5344 39 1 5.5011 8.6301 -2.8402 40 1 5.6091 7.2107 -5.5403 41 1 5.6118 8.9732 -5.2937 42 1 3.0940 8.9240 -3.0226 43 1 2.1305 11.8726 -1.7957 44 1 3.6004 5.8633 -4.9125 45 1 2.1716 6.6670 -4.2190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981206205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:39 Heat of formation + Delta-G solvation = -35.788335 kcal Electronic energy + Delta-G solvation = -24745.348253 eV Core-core repulsion = 21273.747542 eV Total energy + Delta-G solvation = -3471.600710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.20349 -39.63515 -38.72501 -36.05200 -34.82611 -34.59239 -32.72063 -31.10832 -29.95926 -29.14043 -26.25953 -25.66900 -23.68939 -23.32204 -23.15974 -22.07078 -20.73009 -19.78976 -19.21642 -18.86571 -17.46348 -16.91121 -16.52587 -16.41302 -16.15523 -15.60770 -15.36131 -15.28071 -15.18503 -14.99872 -14.71921 -14.42903 -13.84414 -13.79525 -13.45640 -13.43602 -13.25252 -12.89782 -12.83411 -12.82095 -12.59688 -12.42681 -12.20858 -12.15284 -12.08727 -11.81091 -11.69760 -11.60684 -11.51763 -11.24245 -10.95779 -10.83072 -10.18500 -9.65160 -9.53005 -8.95618 -7.90009 -5.18053 -0.53465 0.43785 0.87170 1.37231 1.45911 1.48013 1.56227 2.04322 2.14898 2.58044 3.43095 3.66082 3.71933 3.81677 3.91842 4.07477 4.14852 4.16403 4.33050 4.34539 4.41667 4.43666 4.48530 4.54726 4.68085 4.74018 4.79622 4.80439 4.91855 5.00192 5.05699 5.08571 5.12362 5.17955 5.21321 5.29720 5.35821 5.40050 5.41991 5.43096 5.52760 5.61560 5.67059 6.31485 6.43101 7.11852 7.36838 8.16321 8.36862 9.33613 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.002725 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.096917 B =10272.110233 C =10691.857025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.182 4.182 4 C -0.163 4.163 5 C -0.059 4.059 6 C -0.303 4.303 7 C 0.581 3.419 8 O -0.579 6.579 9 N -0.706 5.706 10 C 0.152 3.848 11 H 0.046 0.954 12 C -0.110 4.110 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.168 3.832 16 H 0.057 0.943 17 N -0.735 5.735 18 C -0.230 4.230 19 H 0.080 0.920 20 C -0.083 4.083 21 N -0.974 5.974 22 Si 0.970 3.030 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.267 1.267 26 C -0.116 4.116 27 S 0.245 5.755 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.410 0.590 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.028 0.972 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.370 0.630 43 H 0.247 0.753 44 H 0.110 0.890 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -28.900 -0.119 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 C -0.302 4.302 4 C -0.192 4.192 5 C -0.093 4.093 6 C -0.423 4.423 7 C 0.368 3.632 8 O -0.460 6.460 9 N -0.357 5.357 10 C 0.048 3.952 11 H 0.064 0.936 12 C -0.148 4.148 13 C -0.144 4.144 14 C -0.166 4.166 15 C 0.059 3.941 16 H 0.075 0.925 17 N -0.376 5.376 18 C -0.362 4.362 19 H 0.098 0.902 20 C -0.275 4.275 21 N -0.626 5.626 22 Si 0.800 3.200 23 H -0.215 1.215 24 H -0.229 1.229 25 H -0.192 1.192 26 C -0.155 4.155 27 S 0.513 5.487 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.246 0.754 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.202 0.798 43 H 0.056 0.944 44 H 0.128 0.872 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.387 -28.412 -1.333 28.446 hybrid contribution -0.253 1.789 2.032 2.719 sum 0.134 -26.623 0.699 26.632 Atomic orbital electron populations 1.21825 0.93615 1.03161 1.02189 1.20319 0.96581 0.87508 1.05074 1.24736 1.05144 1.03105 0.97235 1.20077 1.05036 0.93055 1.01063 1.20932 0.96223 0.97216 0.94918 1.24483 1.18778 0.99752 0.99295 1.17476 0.76881 0.86149 0.82644 1.90847 1.51409 1.44589 1.59203 1.45815 1.67269 1.16797 1.05803 1.20827 0.94778 0.84221 0.95398 0.93625 1.21756 0.93997 0.98571 1.00518 1.21290 0.99783 0.96097 0.97232 1.22061 0.97299 1.01076 0.96150 1.20504 0.93068 0.86635 0.93855 0.92502 1.42760 1.79685 1.05516 1.09626 1.19665 1.34828 0.87000 0.94722 0.90243 1.25561 1.03781 1.02022 0.96100 1.69864 1.54415 1.32466 1.05817 0.85172 0.77847 0.80082 0.76892 1.21532 1.22890 1.19186 1.21990 1.00454 0.98699 0.94319 1.82592 1.58823 1.00230 1.07011 0.90150 0.92690 0.92911 0.89150 0.88150 0.81751 0.84257 0.75357 0.94023 0.88892 0.91205 0.95348 0.89438 0.93927 0.79773 0.94441 0.87158 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.52 16 2 C -0.06 -0.47 6.36 29.85 0.19 -0.28 16 3 C -0.18 -2.67 5.53 24.68 0.14 -2.54 16 4 C -0.16 -2.83 9.99 21.08 0.21 -2.62 16 5 C -0.06 -1.43 10.01 21.72 0.22 -1.21 16 6 C -0.30 -7.96 6.45 24.08 0.16 -7.80 16 7 C 0.58 19.81 7.75 86.42 0.67 20.48 16 8 O -0.58 -25.93 16.50 -4.36 -0.07 -26.01 16 9 N -0.71 -20.41 5.07 -446.60 -2.27 -22.68 16 10 C 0.15 5.22 2.28 44.99 0.10 5.32 16 11 H 0.05 2.12 5.94 -2.39 -0.01 2.10 16 12 C -0.11 -3.47 5.49 30.59 0.17 -3.30 16 13 C -0.11 -3.72 5.77 30.60 0.18 -3.55 16 14 C -0.13 -4.20 5.61 30.60 0.17 -4.03 16 15 C 0.17 6.33 3.10 45.01 0.14 6.47 16 16 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 17 N -0.73 -37.46 4.28 -322.87 -1.38 -38.84 16 18 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 21 N -0.97 -63.05 13.06 21.65 0.28 -62.77 16 22 Si 0.97 47.79 29.55 68.60 2.03 49.82 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 26 C -0.12 -3.53 5.08 30.61 0.16 -3.37 16 27 S 0.24 4.05 22.10 -56.49 -1.25 2.81 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 35 H 0.41 8.61 7.72 -92.71 -0.72 7.90 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.37 21.09 6.06 -92.71 -0.56 20.53 16 43 H 0.25 15.62 8.31 -92.70 -0.77 14.85 16 44 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -77.19 376.00 1.57 -75.62 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.28 Total: 35.56 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.51 Total: -13.52 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -3.36 Total: -124.29 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.07 Total: -26.01 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.25 Total: 2.81 kcal Total: -77.19 1.57 -75.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981206205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.834 kcal (2) G-P(sol) polarization free energy of solvation -77.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds