Wall clock time and date at job start Tue Mar 31 2020 13:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47241 * 2 1 4 4 C 1.37477 * 123.35391 * 265.02561 * 3 2 1 5 5 C 1.33820 * 115.09995 * 179.97438 * 4 3 2 6 6 S 1.70614 * 110.95738 * 0.02562 * 5 4 3 7 7 C 1.36653 * 123.34878 * 85.00197 * 3 2 1 8 8 C 1.46575 * 125.45735 * 0.28673 * 7 3 2 9 9 O 1.21697 * 120.00168 * 359.72040 * 8 7 3 10 10 N 1.34778 * 119.99949 * 179.71779 * 8 7 3 11 11 C 1.46497 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47448 * 325.00226 * 11 10 8 13 13 C 1.53004 * 109.47062 * 84.99830 * 11 10 8 14 14 C 1.53002 * 109.46932 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47416 * 299.99943 * 14 13 11 16 16 C 1.53004 * 109.47024 * 60.00113 * 15 14 13 17 17 H 1.08998 * 109.46764 * 59.99689 * 16 15 14 18 18 N 1.46499 * 109.47321 * 179.97438 * 16 15 14 19 19 C 1.36937 * 119.99985 * 275.00372 * 18 16 15 20 20 H 1.08001 * 119.99918 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00030 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99818 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47346 * 59.99892 * 23 21 19 25 25 H 1.48505 * 109.47109 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47080 * 299.99532 * 23 21 19 27 27 C 1.52998 * 109.47320 * 204.99794 * 11 10 8 28 28 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46846 * 299.99882 * 1 2 3 30 30 H 1.09002 * 109.47537 * 59.99709 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00623 * 2 1 3 32 32 H 1.09002 * 109.47537 * 120.00291 * 2 1 3 33 33 H 1.07995 * 122.44979 * 359.97438 * 4 3 2 34 34 H 1.08003 * 124.51996 * 179.97438 * 5 4 3 35 35 H 0.97005 * 120.00165 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47618 * 300.00067 * 13 11 10 37 37 H 1.09004 * 109.47185 * 60.00318 * 13 11 10 38 38 H 1.09008 * 109.46706 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.46992 * 60.00634 * 14 13 11 40 40 H 1.08998 * 109.47604 * 300.00316 * 15 14 13 41 41 H 1.08998 * 109.47004 * 180.02562 * 15 14 13 42 42 H 0.96997 * 119.99748 * 95.00209 * 18 16 15 43 43 H 0.97003 * 119.99978 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.47604 * 300.00216 * 27 11 10 45 45 H 1.08998 * 109.47089 * 60.00031 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1002 -1.1440 5 6 2.8034 3.3545 -0.9527 6 16 2.7926 3.7563 0.7055 7 6 2.1890 2.1622 1.1372 8 6 1.9057 1.7003 2.4991 9 8 1.4898 0.5718 2.6848 10 7 2.1058 2.5255 3.5458 11 6 1.8221 2.0641 4.9070 12 1 0.9597 1.3977 4.8925 13 6 3.0376 1.3132 5.4547 14 6 2.7416 0.8319 6.8765 15 6 2.4409 2.0366 7.7705 16 6 1.2254 2.7874 7.2229 17 1 0.3630 2.1211 7.2087 18 7 0.9371 3.9405 8.0793 19 6 0.1698 3.7843 9.2026 20 1 -0.2231 2.8110 9.4571 21 6 -0.1038 4.8770 10.0138 22 7 0.3747 6.0632 9.7034 23 14 -1.1510 4.6639 11.5458 24 1 -0.4986 3.6927 12.4604 25 1 -1.2935 5.9722 12.2339 26 1 -2.4930 4.1575 11.1616 27 6 1.5211 3.2683 5.8014 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3115 1.6543 -2.1253 34 1 3.1130 4.0230 -1.7424 35 1 2.4369 3.4252 3.3978 36 1 3.2521 0.4553 4.8175 37 1 3.9001 1.9797 5.4693 38 1 3.6074 0.2966 7.2665 39 1 1.8791 0.1656 6.8623 40 1 3.3034 2.7029 7.7847 41 1 2.2305 1.6937 8.7836 42 1 1.2898 4.8147 7.8505 43 1 0.1838 6.8267 10.2704 44 1 2.3835 3.9348 5.8160 45 1 0.6552 3.8032 5.4112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981537043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:36 Heat of formation + Delta-G solvation = -17.427909 kcal Electronic energy + Delta-G solvation = -24803.929175 eV Core-core repulsion = 21333.124633 eV Total energy + Delta-G solvation = -3470.804542 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.18955 -38.68340 -37.53199 -34.69201 -33.38361 -32.88911 -31.13865 -30.30409 -28.74874 -27.71529 -25.51121 -23.74262 -22.63863 -22.39685 -21.73205 -20.52255 -19.77570 -18.80318 -18.29803 -17.04968 -16.23522 -15.96709 -15.44436 -15.10422 -14.52684 -14.37834 -14.24961 -13.99512 -13.76463 -13.66384 -13.51029 -13.18051 -13.10790 -12.72243 -12.52680 -12.13580 -12.11088 -12.05179 -11.68021 -11.23162 -10.99154 -10.94719 -10.90697 -10.85857 -10.71732 -10.34703 -10.27385 -10.17109 -10.05227 -9.70770 -9.58407 -9.17612 -8.91390 -8.84242 -8.72358 -6.95925 -5.76354 -3.04973 0.28142 1.23100 1.62111 2.14332 3.10020 3.11946 3.44778 3.49249 3.50020 4.54673 4.58455 4.65248 4.90183 4.93968 5.01938 5.10044 5.17828 5.31390 5.33016 5.47919 5.50785 5.57454 5.61424 5.68993 5.74249 5.76970 5.87403 5.89010 5.97739 6.02667 6.05037 6.14691 6.19845 6.26469 6.31938 6.36329 6.52436 6.54230 6.62736 6.73456 6.97204 7.13036 7.45167 7.70863 8.14170 8.42437 9.53510 10.10762 10.45610 11.46347 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.002638 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.469005 B =10609.620852 C =11022.741417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.230 4.230 6 S 0.196 5.804 7 C -0.268 4.268 8 C 0.590 3.410 9 O -0.524 6.524 10 N -0.720 5.720 11 C 0.151 3.849 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.184 3.816 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.130 4.130 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.395 0.605 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -7.728 -23.166 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.036 4.036 4 C -0.178 4.178 5 C -0.368 4.368 6 S 0.465 5.535 7 C -0.388 4.388 8 C 0.376 3.624 9 O -0.403 6.403 10 N -0.370 5.370 11 C 0.047 3.953 12 H 0.108 0.892 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.074 3.926 17 H 0.067 0.933 18 N -0.365 5.365 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.169 4.169 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.958 -7.208 -22.036 24.207 hybrid contribution -0.492 -0.339 -0.305 0.671 sum 6.466 -7.546 -22.341 24.451 Atomic orbital electron populations 1.21604 0.94224 1.01820 1.01820 1.20417 0.96579 0.90530 1.03560 1.19539 0.96094 0.97523 0.90423 1.19924 1.03976 0.94231 0.99693 1.25251 1.08252 1.01351 1.01905 1.83102 1.60041 1.11599 0.98783 1.24526 1.16960 0.99569 0.97759 1.16902 0.77713 0.85153 0.82668 1.90788 1.45710 1.18701 1.85052 1.46071 1.67541 1.16549 1.06823 1.21062 0.98498 0.96725 0.79030 0.89179 1.21888 0.97631 0.99811 0.96928 1.21483 1.01023 0.98530 0.94247 1.22292 1.00173 0.96073 0.99186 1.20078 0.94808 0.90257 0.87495 0.93335 1.42391 1.61387 1.06033 1.26640 1.19201 1.23341 0.94419 0.99902 0.91194 1.24732 1.01290 0.95524 0.99423 1.69650 1.49741 0.99066 1.39815 0.86279 0.80291 0.76554 0.83142 1.21279 1.21734 1.21270 1.22095 1.01988 0.96387 0.96452 0.92315 0.92082 0.93310 0.91445 0.88631 0.83897 0.81445 0.77081 0.92096 0.92066 0.92489 0.92141 0.92665 0.91870 0.78334 0.93499 0.91696 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.78 37.15 0.36 -1.01 16 2 C -0.07 -0.73 5.50 -27.89 -0.15 -0.88 16 3 C -0.02 -0.22 5.16 -105.47 -0.54 -0.76 16 4 C -0.15 -1.24 9.96 -41.41 -0.41 -1.65 16 5 C -0.23 -1.75 10.92 29.18 0.32 -1.43 16 6 S 0.20 1.69 22.16 -107.50 -2.38 -0.69 16 7 C -0.27 -3.06 6.45 -36.79 -0.24 -3.30 16 8 C 0.59 7.99 7.74 -12.90 -0.10 7.89 16 9 O -0.52 -8.37 13.39 5.19 0.07 -8.30 16 10 N -0.72 -9.07 5.07 -55.15 -0.28 -9.35 16 11 C 0.15 2.14 2.45 -67.93 -0.17 1.97 16 12 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.12 -1.69 5.50 -26.73 -0.15 -1.84 16 14 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 15 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 16 C 0.18 3.57 2.77 -67.95 -0.19 3.38 16 17 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 18 N -0.72 -17.81 5.12 -53.45 -0.27 -18.09 16 19 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.13 -2.08 4.86 -26.76 -0.13 -2.21 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.75 7.62 -51.93 -0.40 0.35 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.10 1.16 6.32 -51.93 -0.33 0.83 16 33 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.40 4.26 7.72 -40.82 -0.31 3.94 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.38 9.97 7.80 -40.82 -0.32 9.66 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -31.06 374.52 -10.68 -41.74 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -7.21 Total: 10.33 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -1.95 Total: -11.35 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.17 Total: -54.72 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.06 -10.68 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.316 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds