Wall clock time and date at job start Tue Mar 31 2020 13:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47241 * 2 1 4 4 C 1.37477 * 123.35391 * 265.02561 * 3 2 1 5 5 C 1.33820 * 115.09995 * 179.97438 * 4 3 2 6 6 S 1.70614 * 110.95738 * 0.02562 * 5 4 3 7 7 C 1.36653 * 123.34878 * 85.00197 * 3 2 1 8 8 C 1.46575 * 125.45735 * 0.28673 * 7 3 2 9 9 O 1.21697 * 120.00168 * 359.72040 * 8 7 3 10 10 N 1.34778 * 119.99949 * 179.71779 * 8 7 3 11 11 C 1.46497 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47448 * 325.00226 * 11 10 8 13 13 C 1.53004 * 109.47062 * 84.99830 * 11 10 8 14 14 C 1.53002 * 109.46932 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47416 * 299.99943 * 14 13 11 16 16 C 1.53004 * 109.47024 * 60.00113 * 15 14 13 17 17 H 1.08998 * 109.46764 * 59.99689 * 16 15 14 18 18 N 1.46499 * 109.47321 * 179.97438 * 16 15 14 19 19 C 1.36937 * 119.99985 * 275.00372 * 18 16 15 20 20 H 1.08001 * 119.99918 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00030 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99818 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47346 * 59.99892 * 23 21 19 25 25 H 1.48505 * 109.47109 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47080 * 299.99532 * 23 21 19 27 27 C 1.52998 * 109.47320 * 204.99794 * 11 10 8 28 28 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46846 * 299.99882 * 1 2 3 30 30 H 1.09002 * 109.47537 * 59.99709 * 1 2 3 31 31 H 1.09000 * 109.47058 * 240.00623 * 2 1 3 32 32 H 1.09002 * 109.47537 * 120.00291 * 2 1 3 33 33 H 1.07995 * 122.44979 * 359.97438 * 4 3 2 34 34 H 1.08003 * 124.51996 * 179.97438 * 5 4 3 35 35 H 0.97005 * 120.00165 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47618 * 300.00067 * 13 11 10 37 37 H 1.09004 * 109.47185 * 60.00318 * 13 11 10 38 38 H 1.09008 * 109.46706 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.46992 * 60.00634 * 14 13 11 40 40 H 1.08998 * 109.47604 * 300.00316 * 15 14 13 41 41 H 1.08998 * 109.47004 * 180.02562 * 15 14 13 42 42 H 0.96997 * 119.99748 * 95.00209 * 18 16 15 43 43 H 0.97003 * 119.99978 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.47604 * 300.00216 * 27 11 10 45 45 H 1.08998 * 109.47089 * 60.00031 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3781 2.1002 -1.1440 5 6 2.8034 3.3545 -0.9527 6 16 2.7926 3.7563 0.7055 7 6 2.1890 2.1622 1.1372 8 6 1.9057 1.7003 2.4991 9 8 1.4898 0.5718 2.6848 10 7 2.1058 2.5255 3.5458 11 6 1.8221 2.0641 4.9070 12 1 0.9597 1.3977 4.8925 13 6 3.0376 1.3132 5.4547 14 6 2.7416 0.8319 6.8765 15 6 2.4409 2.0366 7.7705 16 6 1.2254 2.7874 7.2229 17 1 0.3630 2.1211 7.2087 18 7 0.9371 3.9405 8.0793 19 6 0.1698 3.7843 9.2026 20 1 -0.2231 2.8110 9.4571 21 6 -0.1038 4.8770 10.0138 22 7 0.3747 6.0632 9.7034 23 14 -1.1510 4.6639 11.5458 24 1 -0.4986 3.6927 12.4604 25 1 -1.2935 5.9722 12.2339 26 1 -2.4930 4.1575 11.1616 27 6 1.5211 3.2683 5.8014 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3115 1.6543 -2.1253 34 1 3.1130 4.0230 -1.7424 35 1 2.4369 3.4252 3.3978 36 1 3.2521 0.4553 4.8175 37 1 3.9001 1.9797 5.4693 38 1 3.6074 0.2966 7.2665 39 1 1.8791 0.1656 6.8623 40 1 3.3034 2.7029 7.7847 41 1 2.2305 1.6937 8.7836 42 1 1.2898 4.8147 7.8505 43 1 0.1838 6.8267 10.2704 44 1 2.3835 3.9348 5.8160 45 1 0.6552 3.8032 5.4112 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981537043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:35 Heat of formation + Delta-G solvation = -35.733081 kcal Electronic energy + Delta-G solvation = -24804.722947 eV Core-core repulsion = 21333.124633 eV Total energy + Delta-G solvation = -3471.598314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23150 -39.72966 -38.61342 -36.23142 -34.87707 -33.64589 -32.95814 -31.37463 -29.98274 -29.16495 -26.32101 -25.69225 -23.65236 -23.27564 -23.01586 -21.73660 -21.07567 -19.90755 -19.12739 -18.95128 -17.38795 -16.91335 -16.57887 -16.23030 -16.03881 -15.65168 -15.32051 -15.09786 -15.02978 -15.01934 -14.63998 -14.53804 -14.18313 -13.90222 -13.55679 -13.44776 -13.22684 -12.90889 -12.83754 -12.79126 -12.41524 -12.29272 -12.18593 -12.06253 -12.02744 -11.97554 -11.68034 -11.62317 -11.45583 -11.37514 -10.87566 -10.82763 -10.18579 -9.72834 -9.39660 -8.99982 -7.93472 -5.21441 -0.46328 0.52972 0.95783 1.42437 1.47463 1.49863 1.55804 2.06675 2.16568 2.57094 3.39624 3.59919 3.78801 3.84968 3.90733 4.02614 4.16310 4.26390 4.29545 4.33406 4.41729 4.48253 4.51479 4.54126 4.56160 4.65908 4.74927 4.77081 4.89345 5.00391 5.08573 5.09167 5.11523 5.16275 5.20810 5.31637 5.34575 5.39127 5.47418 5.49603 5.52892 5.55058 5.65072 6.29046 6.45188 7.13221 7.35358 8.10799 8.34844 9.29759 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.002638 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.469005 B =10609.620852 C =11022.741417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.214 4.214 6 S 0.216 5.784 7 C -0.306 4.306 8 C 0.587 3.413 9 O -0.557 6.557 10 N -0.715 5.715 11 C 0.161 3.839 12 H 0.072 0.928 13 C -0.116 4.116 14 C -0.105 4.105 15 C -0.126 4.126 16 C 0.178 3.822 17 H 0.037 0.963 18 N -0.736 5.736 19 C -0.238 4.238 20 H 0.072 0.928 21 C -0.074 4.074 22 N -0.969 5.969 23 Si 0.969 3.031 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.116 4.116 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.200 0.800 35 H 0.405 0.595 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.074 0.926 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.876 -8.043 -25.227 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.039 4.039 4 C -0.188 4.188 5 C -0.352 4.352 6 S 0.485 5.515 7 C -0.426 4.426 8 C 0.375 3.625 9 O -0.437 6.437 10 N -0.365 5.365 11 C 0.057 3.943 12 H 0.091 0.909 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.070 3.930 17 H 0.055 0.945 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.090 0.910 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.798 3.202 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.155 4.155 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.185 0.815 34 H 0.217 0.783 35 H 0.241 0.759 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.859 -7.550 -24.122 26.469 hybrid contribution -0.752 -0.261 0.221 0.826 sum 7.107 -7.812 -23.901 26.130 Atomic orbital electron populations 1.21555 0.94333 1.02088 1.01027 1.20403 0.96463 0.90780 1.03478 1.19798 0.95439 0.97589 0.91037 1.20119 1.04203 0.94508 0.99960 1.25692 1.06158 1.01394 1.01947 1.83016 1.59260 1.09529 0.99661 1.24417 1.19686 1.01737 0.96780 1.17234 0.76953 0.84721 0.83594 1.90765 1.47196 1.20059 1.85713 1.45917 1.67515 1.17049 1.06029 1.20784 0.98363 0.95479 0.79721 0.90934 1.21812 0.97493 0.99943 0.96174 1.21408 1.01875 0.97078 0.94035 1.22095 0.98872 0.97035 0.98649 1.20277 0.95210 0.88787 0.88763 0.94518 1.42564 1.61195 1.07036 1.26736 1.19550 1.22645 0.94377 1.00464 0.90972 1.25497 1.03204 0.95414 1.02549 1.69797 1.51538 0.99632 1.40971 0.85277 0.78892 0.76241 0.79770 1.20500 1.22136 1.20601 1.21882 1.01998 0.97081 0.94537 0.91580 0.94957 0.91839 0.89016 0.91126 0.81472 0.78331 0.75924 0.91905 0.90916 0.90479 0.92227 0.92810 0.93877 0.79444 0.94056 0.90723 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.78 71.98 0.70 -1.90 16 2 C -0.07 -1.41 5.50 29.85 0.16 -1.25 16 3 C -0.02 -0.44 5.16 -20.42 -0.11 -0.55 16 4 C -0.16 -2.18 9.96 21.09 0.21 -1.97 16 5 C -0.21 -2.52 10.92 66.82 0.73 -1.79 16 6 S 0.22 3.29 22.16 -56.49 -1.25 2.04 16 7 C -0.31 -6.76 6.45 24.08 0.16 -6.61 16 8 C 0.59 15.99 7.74 86.42 0.67 16.66 16 9 O -0.56 -18.30 13.39 -4.34 -0.06 -18.36 16 10 N -0.71 -17.80 5.07 -446.61 -2.27 -20.06 16 11 C 0.16 4.55 2.45 44.99 0.11 4.66 16 12 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16 13 C -0.12 -3.02 5.50 30.60 0.17 -2.85 16 14 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 15 C -0.13 -4.41 5.50 30.59 0.17 -4.24 16 16 C 0.18 7.00 2.77 44.98 0.12 7.12 16 17 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 18 N -0.74 -36.86 5.12 -323.02 -1.65 -38.51 16 19 C -0.24 -13.28 9.93 84.03 0.83 -12.45 16 20 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 21 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 22 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 23 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 C -0.12 -3.70 4.86 30.58 0.15 -3.56 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.03 0.81 7.62 -2.39 -0.02 0.79 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 32 H 0.07 1.76 6.32 -2.39 -0.02 1.74 16 33 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 34 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.41 8.41 7.72 -92.70 -0.72 7.69 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.37 19.89 7.80 -92.71 -0.72 19.17 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.11 374.52 1.37 -66.74 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.44 Total: 33.76 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 4.73 Total: -15.26 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -3.64 Total: -117.36 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.06 Total: -18.36 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.25 Total: 2.04 kcal Total: -68.11 1.37 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.011 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds