Wall clock time and date at job start Tue Mar 31 2020 13:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47102 * 2 1 4 4 C 1.37470 * 123.35401 * 265.22514 * 3 2 1 5 5 C 1.33813 * 115.10268 * 180.29863 * 4 3 2 6 6 S 1.70618 * 110.95523 * 359.71788 * 5 4 3 7 7 C 1.36649 * 123.35076 * 84.99783 * 3 2 1 8 8 C 1.46586 * 125.45868 * 0.02562 * 7 3 2 9 9 O 1.21704 * 119.99901 * 359.71282 * 8 7 3 10 10 N 1.34777 * 119.99956 * 179.71838 * 8 7 3 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47581 * 34.99768 * 11 10 8 13 13 C 1.53004 * 109.46984 * 274.99541 * 11 10 8 14 14 C 1.53007 * 109.46800 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47210 * 59.99994 * 14 13 11 16 16 C 1.52995 * 109.47206 * 299.99865 * 15 14 13 17 17 H 1.08997 * 109.47058 * 299.99907 * 16 15 14 18 18 N 1.46500 * 109.46969 * 180.02562 * 16 15 14 19 19 C 1.36932 * 120.00792 * 84.99942 * 18 16 15 20 20 H 1.08007 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 120.00743 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99624 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00622 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46722 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47311 * 119.99529 * 23 21 19 26 26 H 1.48494 * 109.47555 * 240.00045 * 23 21 19 27 27 C 1.52996 * 109.47326 * 60.00320 * 16 15 14 28 28 H 1.08996 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46816 * 299.99748 * 1 2 3 30 30 H 1.08991 * 109.47306 * 59.99979 * 1 2 3 31 31 H 1.08994 * 109.47086 * 240.00576 * 2 1 3 32 32 H 1.08997 * 109.47729 * 120.00154 * 2 1 3 33 33 H 1.08003 * 122.45262 * 359.97438 * 4 3 2 34 34 H 1.08002 * 124.52335 * 179.76349 * 5 4 3 35 35 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.46965 * 300.00196 * 13 11 10 37 37 H 1.08998 * 109.47107 * 60.00144 * 13 11 10 38 38 H 1.08996 * 109.46746 * 299.99171 * 14 13 11 39 39 H 1.09008 * 109.46534 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.47000 * 179.97438 * 15 14 13 41 41 H 1.09005 * 109.47370 * 59.99767 * 15 14 13 42 42 H 0.97001 * 119.99551 * 264.99377 * 18 16 15 43 43 H 0.97001 * 119.99750 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47132 * 180.02562 * 27 16 15 45 45 H 1.08997 * 109.47389 * 59.99790 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3744 2.1016 -1.1443 5 6 2.8067 3.3534 -0.9524 6 16 2.7998 3.7538 0.7061 7 6 2.1889 2.1623 1.1371 8 6 1.9005 1.7023 2.4987 9 8 1.4797 0.5754 2.6839 10 7 2.1010 2.5273 3.5454 11 6 1.8132 2.0673 4.9062 12 1 2.0546 1.0077 4.9903 13 6 0.3291 2.2781 5.2126 14 6 0.0287 1.7983 6.6340 15 6 0.8733 2.5948 7.6304 16 6 2.3574 2.3840 7.3240 17 1 2.5989 1.3245 7.4085 18 7 3.1661 3.1463 8.2785 19 6 3.4761 2.6064 9.4981 20 1 3.1240 1.6186 9.7566 21 6 4.2420 3.3289 10.4027 22 7 4.6707 4.5329 10.0879 23 14 4.6642 2.5927 12.0667 24 1 4.0673 1.2371 12.1740 25 1 6.1396 2.4956 12.2051 26 1 4.1219 3.4595 13.1436 27 6 2.6579 2.8639 5.9027 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.3046 1.6568 -2.1260 34 1 3.1177 4.0213 -1.7420 35 1 2.4366 3.4253 3.3977 36 1 0.0877 3.3378 5.1285 37 1 -0.2727 1.7110 4.5024 38 1 0.2701 0.7387 6.7184 39 1 -1.0286 1.9489 6.8525 40 1 0.6590 2.2533 8.6431 41 1 0.6319 3.6544 7.5460 42 1 3.4821 4.0336 8.0464 43 1 5.2055 5.0379 10.7201 44 1 3.7151 2.7133 5.6842 45 1 2.4164 3.9235 5.8182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981537044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:39 Heat of formation + Delta-G solvation = -17.570239 kcal Electronic energy + Delta-G solvation = -24807.659896 eV Core-core repulsion = 21336.849182 eV Total energy + Delta-G solvation = -3470.810714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19008 -38.68488 -37.53260 -34.69448 -33.38764 -32.89576 -31.13973 -30.30571 -28.75217 -27.71565 -25.51889 -23.74678 -22.64615 -22.39784 -21.73466 -20.52371 -19.77478 -18.80905 -18.30146 -17.05316 -16.22757 -15.96947 -15.41817 -15.15867 -14.51384 -14.38169 -14.24441 -13.99881 -13.78152 -13.64563 -13.52566 -13.17610 -13.11998 -12.70276 -12.56162 -12.13308 -12.11375 -12.06257 -11.68671 -11.23462 -10.99933 -10.97706 -10.89738 -10.86152 -10.72179 -10.34568 -10.26676 -10.16479 -10.02786 -9.70481 -9.59476 -9.17838 -8.91763 -8.84915 -8.72401 -6.96016 -5.76897 -3.05420 0.28075 1.23030 1.62027 2.14273 3.09884 3.11897 3.43492 3.49621 3.51454 4.54491 4.58123 4.65094 4.89898 4.93662 5.01682 5.10039 5.17200 5.30274 5.32769 5.47225 5.50515 5.56732 5.61174 5.68786 5.74037 5.76406 5.86846 5.88538 5.97380 6.02372 6.04313 6.14455 6.18193 6.25981 6.31761 6.36257 6.52228 6.54019 6.62495 6.73210 6.96918 7.12740 7.45070 7.71566 8.14066 8.41878 9.53147 10.10375 10.45161 11.45931 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021004 B = 0.002647 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.737829 B =10576.949393 C =11272.942230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.230 4.230 6 S 0.196 5.804 7 C -0.268 4.268 8 C 0.589 3.411 9 O -0.524 6.524 10 N -0.720 5.720 11 C 0.151 3.849 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.184 3.816 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.130 4.130 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.395 0.605 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.069 0.931 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 -2.727 -24.472 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.036 4.036 4 C -0.178 4.178 5 C -0.368 4.368 6 S 0.465 5.535 7 C -0.388 4.388 8 C 0.376 3.624 9 O -0.402 6.402 10 N -0.370 5.370 11 C 0.047 3.953 12 H 0.108 0.892 13 C -0.162 4.162 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.074 3.926 17 H 0.067 0.933 18 N -0.365 5.365 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.169 4.169 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.076 -2.296 -23.329 24.486 hybrid contribution 0.240 -0.570 -0.239 0.663 sum -6.836 -2.866 -23.568 24.706 Atomic orbital electron populations 1.21597 0.94282 1.01788 1.01722 1.20418 0.96530 0.90548 1.03626 1.19535 0.96149 0.97469 0.90423 1.19922 1.03968 0.94238 0.99692 1.25249 1.08166 1.01461 1.01881 1.83102 1.59823 1.11824 0.98773 1.24528 1.16848 0.99672 0.97766 1.16908 0.77786 0.85049 0.82699 1.90790 1.45627 1.18858 1.84972 1.46069 1.67260 1.16774 1.06883 1.21066 0.95026 1.00136 0.79095 0.89176 1.21887 0.95528 1.01323 0.97505 1.21484 0.99513 1.00254 0.94031 1.22291 0.97433 0.99473 0.98529 1.20088 0.89889 0.95736 0.86929 0.93321 1.42410 1.60899 1.18553 1.14619 1.19289 1.26132 0.99595 0.91662 0.91088 1.24735 1.00961 0.96631 0.98729 1.69672 1.41205 1.11455 1.35898 0.86134 0.77780 0.78151 0.84258 1.20532 1.21912 1.21912 1.22107 0.99518 0.99710 0.95593 0.92333 0.92139 0.93348 0.91412 0.88607 0.83896 0.81445 0.77080 0.92072 0.92097 0.92134 0.92488 0.91868 0.92662 0.78339 0.93609 0.91255 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.77 37.16 0.36 -0.96 16 2 C -0.07 -0.73 5.50 -27.88 -0.15 -0.88 16 3 C -0.02 -0.22 5.16 -105.47 -0.54 -0.76 16 4 C -0.15 -1.23 9.96 -41.41 -0.41 -1.65 16 5 C -0.23 -1.74 10.92 29.18 0.32 -1.43 16 6 S 0.20 1.69 22.16 -107.50 -2.38 -0.69 16 7 C -0.27 -3.06 6.45 -36.79 -0.24 -3.30 16 8 C 0.59 7.98 7.74 -12.89 -0.10 7.88 16 9 O -0.52 -8.36 13.37 5.18 0.07 -8.29 16 10 N -0.72 -9.06 5.07 -55.14 -0.28 -9.34 16 11 C 0.15 2.14 2.45 -67.93 -0.17 1.97 16 12 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 13 C -0.12 -1.68 5.50 -26.73 -0.15 -1.83 16 14 C -0.11 -1.64 5.92 -26.73 -0.16 -1.79 16 15 C -0.14 -2.40 5.50 -26.74 -0.15 -2.54 16 16 C 0.18 3.56 2.77 -67.93 -0.19 3.37 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -17.80 5.12 -53.43 -0.27 -18.07 16 19 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 C -0.13 -2.07 4.86 -26.73 -0.13 -2.20 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.71 7.59 -51.93 -0.39 0.31 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.10 1.18 6.33 -51.93 -0.33 0.85 16 33 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.40 4.25 7.71 -40.82 -0.31 3.94 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -31.10 374.48 -10.68 -41.78 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.21 Total: 10.16 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.95 Total: -11.26 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.17 Total: -54.68 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.10 -10.68 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.206 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds