Wall clock time and date at job start Tue Mar 31 2020 13:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47102 * 2 1 4 4 C 1.37470 * 123.35401 * 265.22514 * 3 2 1 5 5 C 1.33813 * 115.10268 * 180.29863 * 4 3 2 6 6 S 1.70618 * 110.95523 * 359.71788 * 5 4 3 7 7 C 1.36649 * 123.35076 * 84.99783 * 3 2 1 8 8 C 1.46586 * 125.45868 * 0.02562 * 7 3 2 9 9 O 1.21704 * 119.99901 * 359.71282 * 8 7 3 10 10 N 1.34777 * 119.99956 * 179.71838 * 8 7 3 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47581 * 34.99768 * 11 10 8 13 13 C 1.53004 * 109.46984 * 274.99541 * 11 10 8 14 14 C 1.53007 * 109.46800 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47210 * 59.99994 * 14 13 11 16 16 C 1.52995 * 109.47206 * 299.99865 * 15 14 13 17 17 H 1.08997 * 109.47058 * 299.99907 * 16 15 14 18 18 N 1.46500 * 109.46969 * 180.02562 * 16 15 14 19 19 C 1.36932 * 120.00792 * 84.99942 * 18 16 15 20 20 H 1.08007 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 120.00743 * 180.02562 * 19 18 16 22 22 N 1.31623 * 119.99624 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00622 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46722 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47311 * 119.99529 * 23 21 19 26 26 H 1.48494 * 109.47555 * 240.00045 * 23 21 19 27 27 C 1.52996 * 109.47326 * 60.00320 * 16 15 14 28 28 H 1.08996 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46816 * 299.99748 * 1 2 3 30 30 H 1.08991 * 109.47306 * 59.99979 * 1 2 3 31 31 H 1.08994 * 109.47086 * 240.00576 * 2 1 3 32 32 H 1.08997 * 109.47729 * 120.00154 * 2 1 3 33 33 H 1.08003 * 122.45262 * 359.97438 * 4 3 2 34 34 H 1.08002 * 124.52335 * 179.76349 * 5 4 3 35 35 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 36 36 H 1.09005 * 109.46965 * 300.00196 * 13 11 10 37 37 H 1.08998 * 109.47107 * 60.00144 * 13 11 10 38 38 H 1.08996 * 109.46746 * 299.99171 * 14 13 11 39 39 H 1.09008 * 109.46534 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.47000 * 179.97438 * 15 14 13 41 41 H 1.09005 * 109.47370 * 59.99767 * 15 14 13 42 42 H 0.97001 * 119.99551 * 264.99377 * 18 16 15 43 43 H 0.97001 * 119.99750 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.47132 * 180.02562 * 27 16 15 45 45 H 1.08997 * 109.47389 * 59.99790 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3744 2.1016 -1.1443 5 6 2.8067 3.3534 -0.9524 6 16 2.7998 3.7538 0.7061 7 6 2.1889 2.1623 1.1371 8 6 1.9005 1.7023 2.4987 9 8 1.4797 0.5754 2.6839 10 7 2.1010 2.5273 3.5454 11 6 1.8132 2.0673 4.9062 12 1 2.0546 1.0077 4.9903 13 6 0.3291 2.2781 5.2126 14 6 0.0287 1.7983 6.6340 15 6 0.8733 2.5948 7.6304 16 6 2.3574 2.3840 7.3240 17 1 2.5989 1.3245 7.4085 18 7 3.1661 3.1463 8.2785 19 6 3.4761 2.6064 9.4981 20 1 3.1240 1.6186 9.7566 21 6 4.2420 3.3289 10.4027 22 7 4.6707 4.5329 10.0879 23 14 4.6642 2.5927 12.0667 24 1 4.0673 1.2371 12.1740 25 1 6.1396 2.4956 12.2051 26 1 4.1219 3.4595 13.1436 27 6 2.6579 2.8639 5.9027 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.3046 1.6568 -2.1260 34 1 3.1177 4.0213 -1.7420 35 1 2.4366 3.4253 3.3977 36 1 0.0877 3.3378 5.1285 37 1 -0.2727 1.7110 4.5024 38 1 0.2701 0.7387 6.7184 39 1 -1.0286 1.9489 6.8525 40 1 0.6590 2.2533 8.6431 41 1 0.6319 3.6544 7.5460 42 1 3.4821 4.0336 8.0464 43 1 5.2055 5.0379 10.7201 44 1 3.7151 2.7133 5.6842 45 1 2.4164 3.9235 5.8182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981537044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:39 Heat of formation + Delta-G solvation = -35.893045 kcal Electronic energy + Delta-G solvation = -24808.454433 eV Core-core repulsion = 21336.849182 eV Total energy + Delta-G solvation = -3471.605251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.23024 -39.72884 -38.61326 -36.23343 -34.87801 -33.64161 -32.95759 -31.37332 -29.98346 -29.16197 -26.31974 -25.69582 -23.65088 -23.26961 -23.02139 -21.73607 -21.07339 -19.90929 -19.13292 -18.95297 -17.38351 -16.91886 -16.53023 -16.20330 -16.15546 -15.60837 -15.32314 -15.09835 -15.02747 -14.98574 -14.72026 -14.46491 -14.20205 -13.89095 -13.58012 -13.43410 -13.22571 -12.91463 -12.84804 -12.82959 -12.40629 -12.27269 -12.15806 -12.03428 -12.00863 -11.97376 -11.68308 -11.62278 -11.46584 -11.37416 -10.90018 -10.82618 -10.18373 -9.72704 -9.39620 -9.00012 -7.93909 -5.21745 -0.46302 0.52986 0.95738 1.42456 1.47442 1.47712 1.57655 2.06631 2.16707 2.56711 3.39563 3.59905 3.78831 3.84990 3.90763 4.02640 4.16309 4.26408 4.29524 4.33481 4.41778 4.48792 4.51456 4.54657 4.56140 4.65921 4.74928 4.77591 4.89901 5.00459 5.08805 5.09199 5.12258 5.16266 5.20804 5.32290 5.34516 5.39250 5.47621 5.49768 5.53254 5.55131 5.65065 6.28967 6.45247 7.13271 7.35219 8.10519 8.34482 9.29720 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021004 B = 0.002647 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.737829 B =10576.949393 C =11272.942230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.214 4.214 6 S 0.217 5.783 7 C -0.306 4.306 8 C 0.587 3.413 9 O -0.557 6.557 10 N -0.715 5.715 11 C 0.161 3.839 12 H 0.073 0.927 13 C -0.115 4.115 14 C -0.105 4.105 15 C -0.126 4.126 16 C 0.178 3.822 17 H 0.037 0.963 18 N -0.736 5.736 19 C -0.235 4.235 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.294 1.294 26 H -0.293 1.293 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.168 0.832 34 H 0.200 0.800 35 H 0.405 0.595 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.060 0.940 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 -2.528 -26.665 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.112 4.112 3 C -0.039 4.039 4 C -0.188 4.188 5 C -0.352 4.352 6 S 0.485 5.515 7 C -0.426 4.426 8 C 0.375 3.625 9 O -0.437 6.437 10 N -0.365 5.365 11 C 0.056 3.944 12 H 0.091 0.909 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.070 3.930 17 H 0.055 0.945 18 N -0.375 5.375 19 C -0.367 4.367 20 H 0.091 0.909 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.798 3.202 24 H -0.193 1.193 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.155 4.155 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.185 0.815 34 H 0.217 0.783 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.680 -2.111 -25.549 26.762 hybrid contribution 0.416 -0.643 0.325 0.832 sum -7.263 -2.754 -25.224 26.393 Atomic orbital electron populations 1.21543 0.94034 1.02097 1.01170 1.20407 0.96747 0.90746 1.03328 1.19794 0.95491 0.97527 0.91042 1.20115 1.04213 0.94514 0.99957 1.25690 1.06067 1.01501 1.01927 1.83015 1.59051 1.09751 0.99641 1.24417 1.19568 1.01850 0.96784 1.17238 0.77062 0.84581 0.83626 1.90768 1.47150 1.20168 1.85640 1.45915 1.67295 1.17233 1.06067 1.20789 0.95180 0.98756 0.79630 0.90910 1.21810 0.94778 1.01993 0.96822 1.21408 0.99964 0.99561 0.93456 1.22095 0.96331 0.99838 0.98394 1.20288 0.90388 0.94522 0.87846 0.94490 1.42583 1.61681 1.18495 1.14790 1.19614 1.24984 0.99463 0.92636 0.90948 1.25495 1.01783 0.97262 1.02224 1.69812 1.42455 1.12764 1.36926 0.85140 0.77125 0.77831 0.80106 1.19253 1.22139 1.22059 1.21894 0.99376 1.00369 0.93866 0.91651 0.94642 0.91766 0.89165 0.91356 0.81487 0.78333 0.75925 0.90937 0.91937 0.92220 0.90486 0.93852 0.92807 0.79442 0.94084 0.92130 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.77 71.98 0.70 -1.74 16 2 C -0.07 -1.43 5.50 29.85 0.16 -1.27 16 3 C -0.02 -0.44 5.16 -20.42 -0.11 -0.55 16 4 C -0.16 -2.19 9.96 21.08 0.21 -1.98 16 5 C -0.21 -2.52 10.92 66.81 0.73 -1.79 16 6 S 0.22 3.28 22.16 -56.49 -1.25 2.03 16 7 C -0.31 -6.76 6.45 24.08 0.16 -6.60 16 8 C 0.59 15.97 7.74 86.42 0.67 16.64 16 9 O -0.56 -18.27 13.37 -4.36 -0.06 -18.33 16 10 N -0.71 -17.76 5.07 -446.58 -2.27 -20.03 16 11 C 0.16 4.54 2.45 45.00 0.11 4.65 16 12 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16 13 C -0.12 -3.01 5.50 30.60 0.17 -2.84 16 14 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 15 C -0.13 -4.40 5.50 30.59 0.17 -4.23 16 16 C 0.18 6.98 2.77 44.99 0.12 7.10 16 17 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 18 N -0.74 -36.78 5.12 -322.96 -1.65 -38.44 16 19 C -0.24 -13.06 9.93 84.03 0.83 -12.23 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 22 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 23 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 C -0.12 -3.70 4.86 30.60 0.15 -3.55 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.03 0.83 7.59 -2.39 -0.02 0.81 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 32 H 0.07 1.73 6.33 -2.39 -0.02 1.72 16 33 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.41 8.39 7.71 -92.71 -0.72 7.68 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.37 19.86 7.80 -92.71 -0.72 19.13 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.10 374.48 1.37 -66.74 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.44 Total: 33.31 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.73 Total: -14.99 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -3.64 Total: -117.22 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.25 Total: 2.03 kcal Total: -68.10 1.37 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.842 kcal (2) G-P(sol) polarization free energy of solvation -68.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds