Wall clock time and date at job start Tue Mar 31 2020 13:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.47304 * 2 1 4 4 C 1.37471 * 123.35113 * 265.02429 * 3 2 1 5 5 C 1.33821 * 115.09881 * 179.97438 * 4 3 2 6 6 S 1.70615 * 110.95562 * 359.76065 * 5 4 3 7 7 C 1.36645 * 123.35023 * 84.99780 * 3 2 1 8 8 C 1.46591 * 125.45849 * 359.97438 * 7 3 2 9 9 O 1.21700 * 119.99838 * 0.02562 * 8 7 3 10 10 N 1.34769 * 119.99670 * 179.97438 * 8 7 3 11 11 C 1.46505 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52996 * 109.46972 * 59.99834 * 13 11 10 15 15 C 1.53001 * 109.47486 * 60.00463 * 14 13 11 16 16 C 1.53002 * 109.46637 * 299.99742 * 15 14 13 17 17 H 1.08993 * 109.47662 * 299.99908 * 16 15 14 18 18 N 1.46504 * 109.46876 * 179.97438 * 16 15 14 19 19 C 1.36942 * 119.99382 * 85.00530 * 18 16 15 20 20 H 1.08000 * 120.00211 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99769 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99915 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00071 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47220 * 59.99712 * 23 21 19 25 25 H 1.48500 * 109.47143 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47059 * 299.99510 * 23 21 19 27 27 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 28 28 H 1.08993 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47208 * 300.00345 * 1 2 3 30 30 H 1.09003 * 109.47088 * 59.99701 * 1 2 3 31 31 H 1.08997 * 109.46942 * 240.00120 * 2 1 3 32 32 H 1.08995 * 109.46940 * 120.00049 * 2 1 3 33 33 H 1.08000 * 122.44992 * 359.95409 * 4 3 2 34 34 H 1.08001 * 124.51821 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 38 38 H 1.09001 * 109.46993 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47298 * 300.00176 * 14 13 11 40 40 H 1.08996 * 109.46778 * 59.99584 * 15 14 13 41 41 H 1.08992 * 109.47514 * 179.97438 * 15 14 13 42 42 H 0.96998 * 120.00342 * 264.99717 * 18 16 15 43 43 H 0.97001 * 120.00197 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.47533 * 59.99637 * 27 11 10 45 45 H 1.08996 * 109.47853 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3783 2.1002 -1.1440 5 6 2.8036 3.3545 -0.9527 6 16 2.7858 3.7587 0.7048 7 6 2.1890 2.1622 1.1371 8 6 1.8995 1.7026 2.4986 9 8 1.4833 0.5741 2.6842 10 7 2.0953 2.5293 3.5448 11 6 1.8065 2.0697 4.9056 12 1 0.9443 1.4030 4.8886 13 6 3.0200 1.3200 5.4591 14 6 4.2302 2.2558 5.4829 15 6 3.9254 3.4613 6.3744 16 6 2.7119 4.2109 5.8209 17 1 2.9267 4.5528 4.8085 18 7 2.4196 5.3649 6.6749 19 6 3.0776 6.5490 6.4744 20 1 3.8123 6.6320 5.6871 21 6 2.8011 7.6423 7.2839 22 7 1.9062 7.5409 8.2436 23 14 3.6992 9.2573 7.0110 24 1 3.4256 9.7499 5.6370 25 1 3.2261 10.2599 7.9991 26 1 5.1595 9.0464 7.1796 27 6 1.5016 3.2751 5.7971 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3119 1.6541 -2.1253 34 1 3.1132 4.0229 -1.7425 35 1 2.4282 3.4283 3.3970 36 1 2.8050 0.9777 6.4713 37 1 3.2373 0.4612 4.8240 38 1 5.0948 1.7216 5.8768 39 1 4.4451 2.5977 4.4704 40 1 3.7105 3.1193 7.3868 41 1 4.7877 4.1277 6.3918 42 1 1.7600 5.2902 7.3821 43 1 1.7127 8.3050 8.8090 44 1 0.6372 3.8093 5.4029 45 1 1.2863 2.9332 6.8094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981537045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:43 Heat of formation + Delta-G solvation = -14.672474 kcal Electronic energy + Delta-G solvation = -25353.413290 eV Core-core repulsion = 21882.728232 eV Total energy + Delta-G solvation = -3470.685058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.23697 -38.74078 -37.42205 -34.48830 -33.14676 -32.79297 -31.17833 -30.32566 -28.80981 -27.84075 -25.46660 -23.75419 -22.56919 -22.32820 -21.75862 -20.98518 -19.03514 -18.95046 -18.11934 -17.14838 -16.11385 -15.75792 -15.36335 -15.01328 -14.87538 -14.42997 -14.19842 -13.99823 -13.71800 -13.57542 -13.45644 -13.08172 -13.02685 -12.54107 -12.43319 -12.08239 -12.02115 -11.85938 -11.73832 -11.57652 -11.13383 -11.01441 -10.88504 -10.82210 -10.77236 -10.38734 -10.23230 -10.18166 -9.80808 -9.75654 -9.53524 -9.09738 -8.90738 -8.78055 -8.61524 -6.98896 -5.79059 -3.08106 0.38916 1.35543 1.75168 2.23714 3.20065 3.22847 3.41628 3.46316 3.47287 4.55105 4.63918 4.74949 4.96745 5.01562 5.09731 5.11186 5.17375 5.24923 5.36071 5.48150 5.54942 5.57543 5.64343 5.68451 5.75550 5.84510 5.86931 5.92028 5.97161 6.05606 6.09799 6.12427 6.21989 6.25460 6.29620 6.38049 6.49089 6.56067 6.65247 6.70796 6.92765 7.07274 7.55737 7.66395 8.22566 8.39302 9.50516 10.07802 10.42494 11.43444 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.003494 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.392651 B = 8012.542464 C = 9131.702193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.022 4.022 4 C -0.148 4.148 5 C -0.232 4.232 6 S 0.206 5.794 7 C -0.270 4.270 8 C 0.590 3.410 9 O -0.530 6.530 10 N -0.714 5.714 11 C 0.153 3.847 12 H 0.087 0.913 13 C -0.127 4.127 14 C -0.116 4.116 15 C -0.137 4.137 16 C 0.181 3.819 17 H 0.040 0.960 18 N -0.724 5.724 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.135 4.135 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -13.530 -17.124 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.038 4.038 4 C -0.180 4.180 5 C -0.370 4.370 6 S 0.475 5.525 7 C -0.390 4.390 8 C 0.376 3.624 9 O -0.410 6.410 10 N -0.366 5.366 11 C 0.049 3.951 12 H 0.105 0.895 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.177 4.177 16 C 0.070 3.930 17 H 0.057 0.943 18 N -0.364 5.364 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.218 0.782 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.869 -12.787 -16.178 20.639 hybrid contribution 0.245 0.321 -0.932 1.015 sum 1.114 -12.466 -17.110 21.199 Atomic orbital electron populations 1.21601 0.94352 1.01657 1.01798 1.20395 0.96475 0.90633 1.03456 1.19500 0.96390 0.97466 0.90419 1.19898 1.04208 0.94275 0.99618 1.25284 1.08168 1.01353 1.02145 1.83370 1.59668 1.10920 0.98498 1.24538 1.17024 0.99681 0.97766 1.16904 0.77647 0.85077 0.82734 1.90761 1.46264 1.18792 1.85152 1.46115 1.67044 1.16882 1.06534 1.20987 0.97907 0.96279 0.79954 0.89541 1.21899 0.95406 0.98132 1.01132 1.21511 0.96920 0.96849 1.00149 1.22284 1.00724 0.95827 0.98868 1.20143 0.91300 0.87376 0.94151 0.94251 1.42408 1.48433 1.07382 1.38218 1.19177 1.16572 0.88478 1.12904 0.91278 1.24732 0.99534 0.98203 0.98352 1.69646 1.35920 1.30651 1.21835 0.86300 0.79188 0.83706 0.77176 1.21263 1.21717 1.21281 1.22145 0.99992 0.95487 0.99721 0.92440 0.92116 0.93338 0.91534 0.88699 0.84001 0.81472 0.76399 0.91030 0.92005 0.92779 0.92722 0.92482 0.92045 0.78218 0.93448 0.91183 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.78 37.16 0.36 -1.04 16 2 C -0.07 -0.75 5.50 -27.88 -0.15 -0.90 16 3 C -0.02 -0.26 5.16 -105.48 -0.54 -0.80 16 4 C -0.15 -1.41 9.96 -41.41 -0.41 -1.82 16 5 C -0.23 -2.09 10.92 29.18 0.32 -1.77 16 6 S 0.21 2.19 22.16 -107.50 -2.38 -0.19 16 7 C -0.27 -3.40 6.45 -36.79 -0.24 -3.64 16 8 C 0.59 8.44 7.74 -12.90 -0.10 8.34 16 9 O -0.53 -8.52 13.38 5.19 0.07 -8.45 16 10 N -0.71 -9.85 4.23 -55.14 -0.23 -10.08 16 11 C 0.15 2.15 2.78 -67.93 -0.19 1.96 16 12 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 13 C -0.13 -1.71 5.60 -26.73 -0.15 -1.86 16 14 C -0.12 -1.64 5.76 -26.73 -0.15 -1.79 16 15 C -0.14 -2.35 5.50 -26.73 -0.15 -2.49 16 16 C 0.18 3.35 2.60 -67.92 -0.18 3.17 16 17 H 0.04 0.74 6.44 -51.93 -0.33 0.40 16 18 N -0.72 -17.38 5.12 -53.42 -0.27 -17.65 16 19 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 20 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C -0.13 -2.12 5.08 -26.73 -0.14 -2.26 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.40 5.43 5.98 -40.82 -0.24 5.19 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.77 7.60 -51.93 -0.39 0.37 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -30.20 370.07 -10.53 -40.73 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -7.03 Total: 11.98 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -1.96 Total: -11.93 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.22 Total: -54.65 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.38 Total: -0.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.20 -10.53 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.062 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds