Wall clock time and date at job start Tue Mar 31 2020 13:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.47304 * 2 1 4 4 C 1.37471 * 123.35113 * 265.02429 * 3 2 1 5 5 C 1.33821 * 115.09881 * 179.97438 * 4 3 2 6 6 S 1.70615 * 110.95562 * 359.76065 * 5 4 3 7 7 C 1.36645 * 123.35023 * 84.99780 * 3 2 1 8 8 C 1.46591 * 125.45849 * 359.97438 * 7 3 2 9 9 O 1.21700 * 119.99838 * 0.02562 * 8 7 3 10 10 N 1.34769 * 119.99670 * 179.97438 * 8 7 3 11 11 C 1.46505 * 119.99686 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47068 * 324.99893 * 11 10 8 13 13 C 1.53002 * 109.47411 * 84.99974 * 11 10 8 14 14 C 1.52996 * 109.46972 * 59.99834 * 13 11 10 15 15 C 1.53001 * 109.47486 * 60.00463 * 14 13 11 16 16 C 1.53002 * 109.46637 * 299.99742 * 15 14 13 17 17 H 1.08993 * 109.47662 * 299.99908 * 16 15 14 18 18 N 1.46504 * 109.46876 * 179.97438 * 16 15 14 19 19 C 1.36942 * 119.99382 * 85.00530 * 18 16 15 20 20 H 1.08000 * 120.00211 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99769 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99915 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00071 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47220 * 59.99712 * 23 21 19 25 25 H 1.48500 * 109.47143 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47059 * 299.99510 * 23 21 19 27 27 C 1.52997 * 109.47212 * 204.99833 * 11 10 8 28 28 H 1.08993 * 109.47318 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47208 * 300.00345 * 1 2 3 30 30 H 1.09003 * 109.47088 * 59.99701 * 1 2 3 31 31 H 1.08997 * 109.46942 * 240.00120 * 2 1 3 32 32 H 1.08995 * 109.46940 * 120.00049 * 2 1 3 33 33 H 1.08000 * 122.44992 * 359.95409 * 4 3 2 34 34 H 1.08001 * 124.51821 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00680 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 37 37 H 1.09000 * 109.46986 * 300.00092 * 13 11 10 38 38 H 1.09001 * 109.46993 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47298 * 300.00176 * 14 13 11 40 40 H 1.08996 * 109.46778 * 59.99584 * 15 14 13 41 41 H 1.08992 * 109.47514 * 179.97438 * 15 14 13 42 42 H 0.96998 * 120.00342 * 264.99717 * 18 16 15 43 43 H 0.97001 * 120.00197 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.47533 * 59.99637 * 27 11 10 45 45 H 1.08996 * 109.47853 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3783 2.1002 -1.1440 5 6 2.8036 3.3545 -0.9527 6 16 2.7858 3.7587 0.7048 7 6 2.1890 2.1622 1.1371 8 6 1.8995 1.7026 2.4986 9 8 1.4833 0.5741 2.6842 10 7 2.0953 2.5293 3.5448 11 6 1.8065 2.0697 4.9056 12 1 0.9443 1.4030 4.8886 13 6 3.0200 1.3200 5.4591 14 6 4.2302 2.2558 5.4829 15 6 3.9254 3.4613 6.3744 16 6 2.7119 4.2109 5.8209 17 1 2.9267 4.5528 4.8085 18 7 2.4196 5.3649 6.6749 19 6 3.0776 6.5490 6.4744 20 1 3.8123 6.6320 5.6871 21 6 2.8011 7.6423 7.2839 22 7 1.9062 7.5409 8.2436 23 14 3.6992 9.2573 7.0110 24 1 3.4256 9.7499 5.6370 25 1 3.2261 10.2599 7.9991 26 1 5.1595 9.0464 7.1796 27 6 1.5016 3.2751 5.7971 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3119 1.6541 -2.1253 34 1 3.1132 4.0229 -1.7425 35 1 2.4282 3.4283 3.3970 36 1 2.8050 0.9777 6.4713 37 1 3.2373 0.4612 4.8240 38 1 5.0948 1.7216 5.8768 39 1 4.4451 2.5977 4.4704 40 1 3.7105 3.1193 7.3868 41 1 4.7877 4.1277 6.3918 42 1 1.7600 5.2902 7.3821 43 1 1.7127 8.3050 8.8090 44 1 0.6372 3.8093 5.4029 45 1 1.2863 2.9332 6.8094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981537045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:42 Heat of formation + Delta-G solvation = -31.567924 kcal Electronic energy + Delta-G solvation = -25354.145932 eV Core-core repulsion = 21882.728232 eV Total energy + Delta-G solvation = -3471.417700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35294 -39.79344 -38.52152 -36.13244 -34.51121 -33.62433 -32.94529 -31.46398 -29.96223 -29.34558 -26.33022 -25.66822 -23.61404 -23.27984 -22.90380 -22.39293 -20.24486 -20.03547 -19.11586 -18.94387 -17.22323 -16.86548 -16.62043 -16.32399 -15.97039 -15.95368 -15.26533 -15.11857 -14.99389 -14.87110 -14.60497 -14.52988 -13.97606 -13.80016 -13.51328 -13.35715 -13.06448 -13.00712 -12.87956 -12.82603 -12.76022 -12.37929 -12.25959 -12.08651 -11.98125 -11.95130 -11.64081 -11.58388 -11.46749 -11.01874 -10.89669 -10.82120 -10.14677 -9.71844 -9.42492 -8.98211 -7.91577 -5.19701 -0.45343 0.53330 0.97176 1.43110 1.48768 1.50977 1.56892 2.15231 2.18426 2.57868 3.41583 3.61744 3.83023 3.88441 3.91005 3.91219 4.18019 4.28584 4.29630 4.34016 4.34551 4.48998 4.54127 4.55538 4.65281 4.70564 4.78456 4.79784 4.89126 4.94482 5.08038 5.08503 5.12374 5.17529 5.21310 5.33198 5.35632 5.41975 5.49229 5.50246 5.54799 5.55990 5.65310 6.30286 6.45611 7.13758 7.36763 8.12735 8.35781 9.31715 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.003494 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.392651 B = 8012.542464 C = 9131.702193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 C -0.021 4.021 4 C -0.155 4.155 5 C -0.215 4.215 6 S 0.196 5.804 7 C -0.304 4.304 8 C 0.589 3.411 9 O -0.555 6.555 10 N -0.714 5.714 11 C 0.160 3.840 12 H 0.087 0.913 13 C -0.121 4.121 14 C -0.106 4.106 15 C -0.127 4.127 16 C 0.177 3.823 17 H 0.040 0.960 18 N -0.736 5.736 19 C -0.236 4.236 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.970 5.970 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.279 1.279 27 C -0.123 4.123 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.170 0.830 34 H 0.198 0.802 35 H 0.400 0.600 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.041 0.959 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.060 0.940 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -14.117 -19.642 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 C -0.037 4.037 4 C -0.186 4.186 5 C -0.352 4.352 6 S 0.465 5.535 7 C -0.423 4.423 8 C 0.377 3.623 9 O -0.436 6.436 10 N -0.365 5.365 11 C 0.055 3.945 12 H 0.105 0.895 13 C -0.159 4.159 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.069 3.931 17 H 0.058 0.942 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.094 0.906 21 C -0.267 4.267 22 N -0.621 5.621 23 Si 0.797 3.203 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.205 1.205 27 C -0.161 4.161 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.188 0.812 34 H 0.215 0.785 35 H 0.237 0.763 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.866 -13.402 -18.736 23.111 hybrid contribution -0.056 0.439 -0.252 0.509 sum 1.810 -12.963 -18.988 23.062 Atomic orbital electron populations 1.21554 0.94190 1.02150 1.01048 1.20406 0.96560 0.90441 1.03559 1.19814 0.95384 0.97713 0.90810 1.20145 1.03971 0.94337 1.00098 1.25669 1.06380 1.01556 1.01615 1.83394 1.59821 1.10062 1.00217 1.24459 1.19557 1.01124 0.97204 1.17160 0.77019 0.84714 0.83448 1.90742 1.47434 1.19723 1.85670 1.46087 1.67097 1.16915 1.06423 1.20877 0.98406 0.95272 0.79896 0.89530 1.21850 0.94535 0.97757 1.01757 1.21414 0.97850 0.95633 0.99477 1.22101 0.98916 0.96507 0.99192 1.20350 0.93074 0.86501 0.93184 0.94179 1.42612 1.48017 1.08311 1.38637 1.19565 1.15783 0.89353 1.12112 0.90618 1.25499 1.00937 1.01525 0.98762 1.69804 1.37953 1.31144 1.23168 0.85295 0.78189 0.79745 0.77064 1.20280 1.22517 1.20547 1.21989 0.98280 0.95465 1.00407 0.91385 0.94821 0.91990 0.88993 0.90952 0.81224 0.78507 0.76335 0.89944 0.91797 0.91157 0.92548 0.93042 0.93971 0.79572 0.94171 0.92092 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.78 71.98 0.70 -1.86 16 2 C -0.07 -1.40 5.50 29.85 0.16 -1.24 16 3 C -0.02 -0.45 5.16 -20.42 -0.11 -0.55 16 4 C -0.15 -2.46 9.96 21.08 0.21 -2.25 16 5 C -0.21 -3.22 10.92 66.82 0.73 -2.49 16 6 S 0.20 3.91 22.16 -56.49 -1.25 2.65 16 7 C -0.30 -7.43 6.45 24.08 0.16 -7.28 16 8 C 0.59 16.79 7.74 86.42 0.67 17.46 16 9 O -0.55 -17.96 13.38 -4.35 -0.06 -18.02 16 10 N -0.71 -19.53 4.23 -446.58 -1.89 -21.41 16 11 C 0.16 4.41 2.78 44.99 0.13 4.53 16 12 H 0.09 2.44 7.58 -2.39 -0.02 2.42 16 13 C -0.12 -3.08 5.60 30.59 0.17 -2.90 16 14 C -0.11 -2.83 5.76 30.59 0.18 -2.65 16 15 C -0.13 -4.30 5.50 30.60 0.17 -4.13 16 16 C 0.18 6.58 2.60 44.99 0.12 6.70 16 17 H 0.04 1.49 6.44 -2.39 -0.02 1.48 16 18 N -0.74 -35.82 5.12 -322.92 -1.65 -37.47 16 19 C -0.24 -12.73 9.93 84.03 0.83 -11.89 16 20 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.08 -4.23 5.50 84.86 0.47 -3.77 16 22 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 23 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 C -0.12 -3.86 5.08 30.60 0.16 -3.71 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 0.83 7.60 -2.39 -0.02 0.81 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.07 1.79 6.33 -2.39 -0.02 1.78 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.40 10.82 5.98 -92.71 -0.55 10.26 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.51 7.60 -2.38 -0.02 1.49 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.37 19.63 7.80 -92.71 -0.72 18.90 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -65.47 370.07 1.92 -63.55 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.28 Total: 37.73 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.74 Total: -16.04 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -3.26 Total: -117.28 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.06 Total: -18.02 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.65 kcal Total: -65.47 1.92 -63.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.981 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds